Lag0006293 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006293
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	BEST Arabidopsis thaliana protein match is: s in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Location	chr6: 40692282 .. 40692851 (-)
RNA-Seq Expression	Lag0006293
Synteny	Lag0006293

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGAAAATTTCATTGGGATATGCAGAACAAAGTGATATCAAGAACCTCTTCAGTTGGCTATTCTTCTCGCAGTATTTACTATTGTGGAACAGTTGAAGGAGTCCCTTTCAAATGGGAAACACAACCAGGAACTCCCAAAGATCCACCCCCTCAGGAGTTGCTTCCACCCCTCAGCCCTCCGCCGGCAATTCTCAGCCTCGGGTTACCGAAACCGTGCATCGAACAACCGAAAATCCGATCTCGACCACGAATGAGGCTTAGGTTTTGGAGGAGAAGCAAGAAGACTAGGGATAGTGAGAGAGCTGCCCAAACAACAACCGTTGACTATAGCAATGGAGGTCCTTTTGGTCACTATGATAAGTTGGAAACTTCTTCATTTCTTAGCTCTGAATCCGAGTTCATGACGTCTCCTCGTAATTCAATATCGTCGTCGTCGTCTTCTTCATCGCCGTCATCTTTGCTCGAGTCGTTAACCATACGAAATATGGGGAGGGTGTCATTTGGAAGGCCTCCGAATTACGGTGCTTGGCAAATTAATCGAATTCTAACTTGTTACCATTGCTAG

mRNA sequence

ATGGATGGAAAATTTCATTGGGATATGCAGAACAAAGTGATATCAAGAACCTCTTCAGTTGGCTATTCTTCTCGCAGTATTTACTATTGTGGAACAGTTGAAGGAGTCCCTTTCAAATGGGAAACACAACCAGGAACTCCCAAAGATCCACCCCCTCAGGAGTTGCTTCCACCCCTCAGCCCTCCGCCGGCAATTCTCAGCCTCGGGTTACCGAAACCGTGCATCGAACAACCGAAAATCCGATCTCGACCACGAATGAGGCTTAGGTTTTGGAGGAGAAGCAAGAAGACTAGGGATAGTGAGAGAGCTGCCCAAACAACAACCGTTGACTATAGCAATGGAGGTCCTTTTGGTCACTATGATAAGTTGGAAACTTCTTCATTTCTTAGCTCTGAATCCGAGTTCATGACGTCTCCTCGTAATTCAATATCGTCGTCGTCGTCTTCTTCATCGCCGTCATCTTTGCTCGAGTCGTTAACCATACGAAATATGGGGAGGGTGTCATTTGGAAGGCCTCCGAATTACGGTGCTTGGCAAATTAATCGAATTCTAACTTGTTACCATTGCTAG

Coding sequence (CDS)

ATGGATGGAAAATTTCATTGGGATATGCAGAACAAAGTGATATCAAGAACCTCTTCAGTTGGCTATTCTTCTCGCAGTATTTACTATTGTGGAACAGTTGAAGGAGTCCCTTTCAAATGGGAAACACAACCAGGAACTCCCAAAGATCCACCCCCTCAGGAGTTGCTTCCACCCCTCAGCCCTCCGCCGGCAATTCTCAGCCTCGGGTTACCGAAACCGTGCATCGAACAACCGAAAATCCGATCTCGACCACGAATGAGGCTTAGGTTTTGGAGGAGAAGCAAGAAGACTAGGGATAGTGAGAGAGCTGCCCAAACAACAACCGTTGACTATAGCAATGGAGGTCCTTTTGGTCACTATGATAAGTTGGAAACTTCTTCATTTCTTAGCTCTGAATCCGAGTTCATGACGTCTCCTCGTAATTCAATATCGTCGTCGTCGTCTTCTTCATCGCCGTCATCTTTGCTCGAGTCGTTAACCATACGAAATATGGGGAGGGTGTCATTTGGAAGGCCTCCGAATTACGGTGCTTGGCAAATTAATCGAATTCTAACTTGTTACCATTGCTAG

Protein sequence

MDGKFHWDMQNKVISRTSSVGYSSRSIYYCGTVEGVPFKWETQPGTPKDPPPQELLPPLSPPPAILSLGLPKPCIEQPKIRSRPRMRLRFWRRSKKTRDSERAAQTTTVDYSNGGPFGHYDKLETSSFLSSESEFMTSPRNSISSSSSSSSPSSLLESLTIRNMGRVSFGRPPNYGAWQINRILTCYHC

Homology

[Close]

BLAST of Lag0006293 vs. NCBI nr
Match: KAG7029810.1 (hypothetical protein SDJN02_08153, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269.6 bits (688), Expect = 2.0e-68
Identity = 141/191 (73.82%), Postives = 160/191 (83.77%), Query Frame = 0


Query: 1   MDGKFHWDMQNKVISRTSSVGYSSRSIYYCGTVEGVPFKWETQPGTPKDPPPQELLPPLS 60
           MDG FHWDM++KVI+RTSS+G SSRS YYCG  EGVPFKWETQPGTPKDPPPQ+LLPPLS
Sbjct: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60

Query: 61  PPPAILSLGLPKPCIEQPKIRSRPR--MRLRFWRRSKKTRDSERAAQTTTVDYSNGGPFG 120
           PPPA++SLGLP PCIE+PK R RPR  M+LRFWRR KK+RD  RAAQ TT+DYSN     
Sbjct: 61  PPPAVISLGLPLPCIEKPKTRPRPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSN----- 120

Query: 121 HYDKLETSSFLSSESEFMTSPRNSISSSSSSSSPSSLLESLTIRNMGRVSFGRPPNYG-A 180
             DKLET SFLSS+ EFM SPR+S+SSSSSSSSPSSL+ESLT+RNMGRVS GRP +   A
Sbjct: 121 --DKLETFSFLSSDCEFMASPRDSMSSSSSSSSPSSLIESLTVRNMGRVSLGRPSSCSTA 180

Query: 181 WQINRILTCYH 189
            +I+RIL CYH
Sbjct: 181 GKIHRILACYH 184

[Close]

BLAST of Lag0006293 vs. NCBI nr
Match: XP_022929606.1 (uncharacterized protein LOC111436141 [Cucurbita moschata])

HSP 1 Score: 269.2 bits (687), Expect = 2.6e-68
Identity = 139/189 (73.54%), Postives = 158/189 (83.60%), Query Frame = 0


Query: 1   MDGKFHWDMQNKVISRTSSVGYSSRSIYYCGTVEGVPFKWETQPGTPKDPPPQELLPPLS 60
           MDG FHWDM++KVI+RTSS+G SSRS YYCG  EGVPFKWETQPGTPKDPPPQ+LLPPLS
Sbjct: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60

Query: 61  PPPAILSLGLPKPCIEQPKIRSRPRMRLRFWRRSKKTRDSERAAQTTTVDYSNGGPFGHY 120
           PPPA++SLGLP PCIE+PK R RP M+L FWRR KK+RD  RAAQ TT+DYSN       
Sbjct: 61  PPPAVISLGLPLPCIEKPKTRPRPTMKLWFWRRVKKSRDGGRAAQATTIDYSN------- 120

Query: 121 DKLETSSFLSSESEFMTSPRNSISSSSSSSSPSSLLESLTIRNMGRVSFGRPPNYG-AWQ 180
           DKLET SFLSS+ EFM SPR+S+SSSSSSSSPSSL+ESLT+RNMGRVS GRP +   A +
Sbjct: 121 DKLETFSFLSSDCEFMASPRDSMSSSSSSSSPSSLIESLTVRNMGRVSLGRPSSCSTAGK 180

Query: 181 INRILTCYH 189
           I+RIL CYH
Sbjct: 181 IHRILACYH 182

[Close]

BLAST of Lag0006293 vs. NCBI nr
Match: XP_022997465.1 (uncharacterized protein LOC111492375 [Cucurbita maxima])

HSP 1 Score: 268.1 bits (684), Expect = 5.8e-68
Identity = 141/192 (73.44%), Postives = 160/192 (83.33%), Query Frame = 0


Query: 1   MDGKFHWDMQNKVISRTSSVGYSSRSIYYCGTVEGVPFKWETQPGTPKDPPPQELLPPLS 60
           MDG FHWDM++KVI+RTSS+G SSRS YYCG  EGVPFKWETQPGTPKDPPPQ+LLPPLS
Sbjct: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60

Query: 61  PPPAILSLGLPKPCIEQPKIRSRPRMRLRFWRRSKKTRDSERAAQTTTVDYSNGGPFGHY 120
           PPPA+LSLGLP PCIE+PK R RP M+LRFWRR KK+RD  RAAQ TT+DYSNG      
Sbjct: 61  PPPAVLSLGLPLPCIEKPKTRPRPTMKLRFWRRVKKSRDDGRAAQATTIDYSNG------ 120

Query: 121 DKLETSSFLSSESEFMTSPRNSI---SSSSSSSSPSSLLESLTIRNMGRVSFGRPPNYG- 180
            KLET SFLSS+ EFM SPR+S+   SSSSSSSSPSSL+ESLT+R+MGRVS GRP + G 
Sbjct: 121 -KLETFSFLSSDCEFMASPRDSMSSSSSSSSSSSPSSLIESLTVRHMGRVSLGRPSSCGT 180

Query: 181 AWQINRILTCYH 189
           A +I+RIL CYH
Sbjct: 181 AGKIHRILACYH 185

[Close]

BLAST of Lag0006293 vs. NCBI nr
Match: XP_023546389.1 (uncharacterized protein LOC111805512 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.5 bits (680), Expect = 1.7e-67
Identity = 137/189 (72.49%), Postives = 157/189 (83.07%), Query Frame = 0


Query: 1   MDGKFHWDMQNKVISRTSSVGYSSRSIYYCGTVEGVPFKWETQPGTPKDPPPQELLPPLS 60
           MDG FHWDM++KVI+RTSS+G SSRS YYCG  EGVPF WETQPGTPKDPPPQ+LLPPLS
Sbjct: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFVWETQPGTPKDPPPQDLLPPLS 60

Query: 61  PPPAILSLGLPKPCIEQPKIRSRPRMRLRFWRRSKKTRDSERAAQTTTVDYSNGGPFGHY 120
           PPPA++SLGLP PCIE+PK R RP M+LRFWRR KK+RD  RAAQ TT+DYSN       
Sbjct: 61  PPPAVISLGLPLPCIEKPKTRPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSN------- 120

Query: 121 DKLETSSFLSSESEFMTSPRNSISSSSSSSSPSSLLESLTIRNMGRVSFGRPPNYG-AWQ 180
           DKLET SFLSS+ EFM SPR+S+SSSSSSSSPSSL+ESLT++NMGR S GRP +   A +
Sbjct: 121 DKLETFSFLSSDCEFMASPRDSMSSSSSSSSPSSLIESLTVQNMGRASLGRPSSCSTAGK 180

Query: 181 INRILTCYH 189
           I+RIL CYH
Sbjct: 181 IHRILACYH 182

[Close]

BLAST of Lag0006293 vs. NCBI nr
Match: XP_022153305.1 (uncharacterized protein LOC111020830 [Momordica charantia])

HSP 1 Score: 264.6 bits (675), Expect = 6.5e-67
Identity = 140/192 (72.92%), Postives = 153/192 (79.69%), Query Frame = 0


Query: 1   MDGKFHWDMQNKVISRTSSVGYSSRSIYYCGTVEGVPFKWETQPGTPKDPPPQELLPPLS 60
           MDGKFHWD ++KVISRTSSVG SSRSIYYCGT EGVPFKWETQPGTPKDPPPQE+LPPLS
Sbjct: 1   MDGKFHWDTKSKVISRTSSVGCSSRSIYYCGTAEGVPFKWETQPGTPKDPPPQEMLPPLS 60

Query: 61  PPPAILSLGLPKPCIEQPKIRSRPRMRLRFWRRSKKTRDSERAAQTTTVDYSNGGPFGHY 120
           PPPA+LSLGLPKPCIE+P  R R RM LRFWR+S+K R+             NG  FGH 
Sbjct: 61  PPPAVLSLGLPKPCIERPNPRPRLRMSLRFWRKSEKKRE-------------NGDGFGHP 120

Query: 121 DKLETSSFLSSESEFMTSPRNSI---SSSSSSSSPSSLLESLTIRNMGRVSFGRPPNYGA 180
           DKLETSSF+SS+ EFM SPR+S+   SSSSSSS PSSLLESL +RNMGRVSFGRP     
Sbjct: 121 DKLETSSFMSSDGEFMASPRDSVSSLSSSSSSSLPSSLLESLNVRNMGRVSFGRP----- 174

Query: 181 WQINRILTCYHC 190
           WQINR L CYHC
Sbjct: 181 WQINRFLACYHC 174

The following BLAST results are available for this feature:

BLAST of Lag0006293 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029810.1	2.0e-68	73.82	hypothetical protein SDJN02_08153, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022929606.1	2.6e-68	73.54	uncharacterized protein LOC111436141 [Cucurbita moschata]	[more]
XP_022997465.1	5.8e-68	73.44	uncharacterized protein LOC111492375 [Cucurbita maxima]	[more]
XP_023546389.1	1.7e-67	72.49	uncharacterized protein LOC111805512 [Cucurbita pepo subsp. pepo]	[more]
XP_022153305.1	6.5e-67	72.92	uncharacterized protein LOC111020830 [Momordica charantia]	[more]

BLAST of Lag0006293 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..116
None	No IPR available	PANTHER	PTHR33257:SF6	OXYSTEROL-BINDING 4B-LIKE PROTEIN-RELATED	coord: 9..157
None	No IPR available	PANTHER	PTHR33257	OS05G0165500 PROTEIN	coord: 9..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006293.1	Lag0006293.1	mRNA