Lag0006275 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006275
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr6: 40381661 .. 40384508 (-)
RNA-Seq ExpressionLag0006275
SyntenyLag0006275
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGTCCAATGGAGATTTTTGTTGACAACAAATCGGCCATTGCCTTAGCCAAAAATCCGGTATTTCATGGGAGGAGCAAGCACATTGATACCCGATTTCACTACATTCGAGATTGCTTTGCGAATAAAGAAGTGGAACTCAAATATATCAAGTCACAAGACCAAGCGGCAGACATTTTCACAAAGTCCCTCAAGTTGGAGACTTTTATCAGAATGAGGAGTTTACTTGGTGTAACAAATCAAGTTTAGGGGGGTGTTGAGAAAATGAAAAGTTTTTTCATTATTAAACTTTATTTGTGGCATTTAGTGTCACTTTTGGTTTTTGTGACTTTTGACTTTTGGTTTCTTGTAATCAATGGTGACTTTTGAGTTTTGGGAGTTAGGTGAGTTATGAGCATTTTATCACATTTAAAGTTTTGAACCATTGGTATTCTATGGTTACTTTTGTAAGCCTATATAAAGGCATGCTTAGTTGAATGAAAAATCATCTCCACTCATACTTGTCTTCCACGTTTTTCTAACAAGAATATGCTGGTAAATAACAAGATTAGTGAGAGAAAATATATATGTCGAGAGAAGTTATAAAAAAGTGTACGTTTGAGTCGAGAGAGACAGGTAAGAAAAAATGTGTTTAAAGAGAAGTTAGAGAAGTATATCGGTGGAGAGATATTGGTGAGAGAAAGTATATAAATGTTTTTTTTTTGGTTTAACAATATTTACGAGTCGAGGGACTGATGTAGATATTCACTAGTTGTTCCACACAAGTAAGATATCCATACTTGTATGGTCTATATTATGGTTCTCAAAATTTTATTTTCAAATTCTCAAGTTTCGCATTGTTACAGCCAGTTCCATTTTTCTTGTCTAATGTGTCCTTCTTGGGTTCATTTTATCTAGTTTTTTAAGGTCCCGTTTGATAACCGTTTGGTTTTTTGTTTTTTGTTTTTGAAAATTATTCTTGTTTTCTCCTACATTTCTTACCATGACTTTCATCCTAGTTAAGGTTGCATTTGAATTCCTAACCAAAATTTAAAAACAAAAACAAGTTTTTGAAAATTACTTTTTTTTTTTGTTTCCAAAATTGGACTTGGTTTTTGAAAACAAAGTAGAATATTGATACTAAAACCAAGAAACTTATAGGTGGAAGTATGTGTATATAAGTTTAATTTTTAAAAACTAAAAACCAAATGATTATCAAACGAGGCCTAAACTACTTTATTTATGTAATTGTGTACCACCAATTTAGATCCTTTACGAAGTCATTCTATGGTCGGTTAATGTTGTTTTCTGGTTACTCTGTGTGAGTCACTCATATATGCATATATGTTCTTTGGGTTTTTTTAGTTATGTACCAAATTATGTGCTTACAAAGTCGTTTCCGACCTTACATTCACTTTGCCTCTCTAAGATCCCTCTTTTCAAAATTTGAGTTTATAAGAATCCTGACTTCGTTCATAGTTTTGAGTTAGAAGGTGAAATTTGTTTATTAATAATTTGAACACATTGATTCTAAGACGTGTTTAATTGTGAAATAAATCTTGATCTTTTGATACTTTCTGTTTTGTTTTGTTTTCTTCTTGTAGGTGAATGAAGAGGTAGTGTGGCACAACATTATACTTAGTGAGAAAGAATTTGTAATAGTTTTATCCATCCATCTTTTGAATTAACAATGGTTGTGATATTGACTTAAACATATTTCAAATTTATACATTGGGTCTATATATGTTTTAGAATCTATTTAGGATTTATAAACTATTAGGATATACTATTTGTAATGTTTAATTGAAGTTTTGATGTAAACATTAAGGAGGGTCAAGGAGGGTCGAAGTGAGCATAGCTCACTAAGAGTCAAAGTGAGCATAGCCCAAGAAGGATCGAATTCCACCATCCCCAAATGTTGATGAACTCAAAAGAAAAAAATTGTTATTATTATTATTATTAAAAAAACCCATCTTCATGAATGGGACCCAAATCTTGTGGAGGAACCAATTGGGAAAAGATTCAAGGAGACGGTGTTAGTAGATGTGATGAATATATCGGTGAACCCTGATGTTCAGGGTCGCCATCAGGCATAAAGATAATATGCTGGAATGTTCGGGGAGTGGGGAATCCTCGGGCATTCAATAGTTTGCGCCAGTTGGTGCGAGAAGAAGATCCCCAACTCTTGTTCTTATCTGAAACAAAGATCAAGAGTTCAAAAGCGTCGGTGTTAAAAGAGAAGCTGAGGTTTGAGGGAGTGATTGTGGTGGATTGTGTAGGAAAGGGTGGTGGTTTGTGTTTGTTCTAGAAGGAGGGTTTGGAGGTGGTCTTGCGGTCCTATAGTAGGTATCATGTGGATTCAGTGGTGAAATCTAAAGATGGTCATTGGAGGTTTACGGGGTTTTATGGGGACCCAGAAGTGAGGAATAGGAAGTGTTCATGGGAGCTTATGCGGCGATTGAATGACTTGCCATCAATGCCTTGGGTATTAGGGGGAGACTTCAATGAGTTGTTAAGCTCAGAGAAGAAACAAGGTGGGAATGCCCGAGATCAAGGCCAGAAGCAAGAGTTTAGGGATGTGATTGATGACTGTGGCTTGACTGATATGATGTTTAGAGGGCACCCGTTCACATGGTTTAAACTGAAGAATGGTCGTGTGACAATGCAGGAGAGGTTGGATAGAGGCCTCTGTAATGATTCCTTTTGGATGATGTTCCTGTTCTCTACAGTGAGTCATTTGAAGTTTCGGTTGTCTGACCATTGTCCAGTCCGGATTGACGTGGATAGTTGTGGTGGGCTAGCTAGTCGTGGGTGTAGGCCACTGTTTCGTTTTGAGGAGGTTTGGACTCAGTATGATGAGTGCTGA

mRNA sequence

ATGGAAGGTCCAATGGAGATTTTTGTTGACAACAAATCGGCCATTGCCTTAGCCAAAAATCCGGTATTTCATGGGAGGAGCAAGCACATTGATACCCGATTTCACTACATTCGAGATTGCTTTGCGAATAAAGAAGTGGAACTCAAATATATCAAGTCACAAGACCAAGCGGCAGACATTTTCACAAAGTCCCTCAAGTTGGAGACTTTTATCAGAATGAGGAGTTTACTTGGTGTAACAAATCAAGTGAATGAAGAGGTAGTGTGGCACAACATTATACTTAGGTCGCCATCAGGCATAAAGATAATATGCTGGAATGTTCGGGGAGTGGGGAATCCTCGGGCATTCAATAGTTTGCGCCAGTTGGTGCGAGAAGAAGATCCCCAACTCTTGTTCTTATCTGAAACAAAGATCAAGAGTTCAAAAGCGTCGGTGTTAAAAGAGAAGCTGAGGTATCATGTGGATTCAGTGGTGAAATCTAAAGATGGTCATTGGAGGTTTACGGGGTTTTATGGGGACCCAGAAGTGAGGAATAGGAAGTGTTCATGGGAGCTTATGCGGCGATTGAATGACTTGCCATCAATGCCTTGGGTATTAGGGGGAGACTTCAATGAGTTGTTAAGCTCAGAGAAGAAACAAGGTGGGAATGCCCGAGATCAAGGCCAGAAGCAAGAGTTTAGGGATGTGATTGATGACTGTGGCTTGACTGATATGATGTTTAGAGGGCACCCGTTCACATGGTTTAAACTGAAGAATGGTCGTGTGACAATGCAGGAGAGGTTGGATAGAGGCCTCTGTAATGATTCCTTTTGGATGATGTTCCTGTTCTCTACAGTGAGTCATTTGAAGTTTCGGTTGTCTGACCATTGTCCAGTCCGGATTGACGTGGATAGTTGTGGTGGGCTAGCTAGTCGTGGGTGTAGGCCACTGTTTCGTTTTGAGGAGGTTTGGACTCAGTATGATGAGTGCTGA

Coding sequence (CDS)

ATGGAAGGTCCAATGGAGATTTTTGTTGACAACAAATCGGCCATTGCCTTAGCCAAAAATCCGGTATTTCATGGGAGGAGCAAGCACATTGATACCCGATTTCACTACATTCGAGATTGCTTTGCGAATAAAGAAGTGGAACTCAAATATATCAAGTCACAAGACCAAGCGGCAGACATTTTCACAAAGTCCCTCAAGTTGGAGACTTTTATCAGAATGAGGAGTTTACTTGGTGTAACAAATCAAGTGAATGAAGAGGTAGTGTGGCACAACATTATACTTAGGTCGCCATCAGGCATAAAGATAATATGCTGGAATGTTCGGGGAGTGGGGAATCCTCGGGCATTCAATAGTTTGCGCCAGTTGGTGCGAGAAGAAGATCCCCAACTCTTGTTCTTATCTGAAACAAAGATCAAGAGTTCAAAAGCGTCGGTGTTAAAAGAGAAGCTGAGGTATCATGTGGATTCAGTGGTGAAATCTAAAGATGGTCATTGGAGGTTTACGGGGTTTTATGGGGACCCAGAAGTGAGGAATAGGAAGTGTTCATGGGAGCTTATGCGGCGATTGAATGACTTGCCATCAATGCCTTGGGTATTAGGGGGAGACTTCAATGAGTTGTTAAGCTCAGAGAAGAAACAAGGTGGGAATGCCCGAGATCAAGGCCAGAAGCAAGAGTTTAGGGATGTGATTGATGACTGTGGCTTGACTGATATGATGTTTAGAGGGCACCCGTTCACATGGTTTAAACTGAAGAATGGTCGTGTGACAATGCAGGAGAGGTTGGATAGAGGCCTCTGTAATGATTCCTTTTGGATGATGTTCCTGTTCTCTACAGTGAGTCATTTGAAGTTTCGGTTGTCTGACCATTGTCCAGTCCGGATTGACGTGGATAGTTGTGGTGGGCTAGCTAGTCGTGGGTGTAGGCCACTGTTTCGTTTTGAGGAGGTTTGGACTCAGTATGATGAGTGCTGA

Protein sequence

MEGPMEIFVDNKSAIALAKNPVFHGRSKHIDTRFHYIRDCFANKEVELKYIKSQDQAADIFTKSLKLETFIRMRSLLGVTNQVNEEVVWHNIILRSPSGIKIICWNVRGVGNPRAFNSLRQLVREEDPQLLFLSETKIKSSKASVLKEKLRYHVDSVVKSKDGHWRFTGFYGDPEVRNRKCSWELMRRLNDLPSMPWVLGGDFNELLSSEKKQGGNARDQGQKQEFRDVIDDCGLTDMMFRGHPFTWFKLKNGRVTMQERLDRGLCNDSFWMMFLFSTVSHLKFRLSDHCPVRIDVDSCGGLASRGCRPLFRFEEVWTQYDEC
Homology
BLAST of Lag0006275 vs. NCBI nr
Match: RZB91206.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Glycine soja])

HSP 1 Score: 193.0 bits (489), Expect = 4.1e-45
Identity = 111/269 (41.26%), Postives = 154/269 (57.25%), Query Frame = 0

Query: 2   EGPMEIFVDNKSAIALAKNPVFHGRSKHIDTRFHYIRDCFANKEVELKYIKSQDQAADIF 61
           E PMEI VD+K A+ALAKNPVFH RSKHIDTR+H+IR+C   KEV+LKY+ SQDQ ADIF
Sbjct: 221 EKPMEICVDDKLALALAKNPVFHERSKHIDTRYHFIRECIEKKEVKLKYVMSQDQVADIF 280

Query: 62  TKSLKLETFIRMRSLLGVTNQVNEEVVWHNI---ILRSPSGIKIICWNVRGVGNPRAFNS 121
           TK LKLETF+++RS+LGVTNQV   V W  +         G  I+           A + 
Sbjct: 281 TKPLKLETFVKLRSMLGVTNQV--VVYWKELRGFEYGEDEGQAIL-----------AVSV 340

Query: 122 LRQLVREEDPQLLFLSETKIKSSKASVLKEKLRYHVDSVVKSKDGHWRFTGFYGDPEVRN 181
           LR LVR +   ++FLS   +++S    +  KL +     +   D   R  G+YG  + R 
Sbjct: 341 LRDLVRVQKSDMVFLSMMLVQASCIEDIHIKLGFENGFAIDRID---RSGGYYGIVDHRR 400

Query: 182 RKCSWELMRRLNDLPSMPWVLGGDFNELLSSEKKQGGNARDQGQKQEFRDVIDDCGLTDM 241
            K SW+L+R +      PW + GDFN++L  E K G         Q FR+ + + G+ D+
Sbjct: 401 MKESWDLLRSVVACIQDPWCVIGDFNDILVDEDKCGRVPHPFWFLQGFREAVSNRGVLDI 460

Query: 242 MFRGHPFTWFKLKNGRVTMQERLDRGLCN 268
              G+P+TW   +     ++E+LD  + N
Sbjct: 461 TLEGYPYTWGHCRGSNNAVKEKLDHTMVN 473

BLAST of Lag0006275 vs. NCBI nr
Match: KAF5443558.1 (hypothetical protein F2P56_036105, partial [Juglans regia])

HSP 1 Score: 192.2 bits (487), Expect = 7.0e-45
Identity = 102/259 (39.38%), Postives = 138/259 (53.28%), Query Frame = 0

Query: 100 IKIICWNVRGVGNPRAFNSLRQLVREEDPQLLFLSETKIKSSKASVLKEKLR-------- 159
           +K++CWN RG+GNP+    LR L+  EDP L+FL ETK+K+      K +L         
Sbjct: 1   MKLLCWNSRGLGNPQGIRVLRDLITNEDPSLVFLQETKLKARAMENCKFRLHLTHCFTVD 60

Query: 160 -------------------------YHVDSVVKSKDG-HWRFTGFYGDPEVRNRKCSWEL 219
                                    +H+D++++  DG  WRFTG YG+PEV NR  +W L
Sbjct: 61  CVGRSGGLSLLWKGDLRVRVQSFSLHHIDALIQDGDGPEWRFTGVYGNPEVVNRYLTWNL 120

Query: 220 MRRLNDLPSMPWVLGGDFNELLSSEKKQGGNARDQGQKQEFRDVIDDCGLTDMMFRGHPF 279
           +RRLN     PW++GGDFNELL   +K+GG  R + Q + FR+VI DC L D+ FRG  +
Sbjct: 121 LRRLNSGVDGPWLVGGDFNELLHFNEKRGGRPRSENQMEAFRNVIFDCSLRDLGFRGPKY 180

Query: 280 TWFKLKNGRVTMQERLDRGLCNDSFWMMFLFSTVSHLKFRLSDHCPVRIDVDSCGGLASR 324
           TW   + G   + ERLDR L N+ F  +F    V H     SDH PV  D +    L  R
Sbjct: 181 TWCNGRAGSRAISERLDRFLGNNQFCALFPQFVVRHGMAAYSDHLPVWFDSEE---LEKR 240

BLAST of Lag0006275 vs. NCBI nr
Match: KAA3469008.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 190.3 bits (482), Expect = 2.6e-44
Identity = 92/240 (38.33%), Postives = 137/240 (57.08%), Query Frame = 0

Query: 100 IKIICWNVRGVGNPRAFNSLRQLVREEDPQLLFLSETKIKSSKASVLKEKLRY------- 159
           +KI+ WNVRG+G  R    L+  +R   PQ++FL ETK+ S +   ++ +  +       
Sbjct: 1   MKILSWNVRGLGQSRTVRRLKNKLRHIQPQIVFLIETKVTSRRMDSIRRRCGFANGIDVE 60

Query: 160 -------HVDSVVKSKDG--HWRFTGFYGDPEVRNRKCSWELMRRLNDLPSMPWVLGGDF 219
                  H+D VV+ +DG   WRFTGFYG+P   NR+ SWEL+R L +  ++PW++ GDF
Sbjct: 61  ATGSRGSHIDVVVEEEDGAKTWRFTGFYGEPVEHNRRTSWELLRGLQNGNNLPWLVAGDF 120

Query: 220 NELLSSEKKQGGNARDQGQKQEFRDVIDDCGLTDMMFRGHPFTWFKLKNGRVTMQERLDR 279
           NE+L S +KQGG  R++ Q   FR  +DDC L D+ F G  +TW + +     ++ERLDR
Sbjct: 121 NEILFSFEKQGGQIREERQMDAFRKTLDDCELADLGFSGQWYTWERGRLVSNNIRERLDR 180

Query: 280 GLCNDSFWMMFLFSTVSHLKFRLSDHCPVRIDVDSCGGLASRGCRPLFRFEEVWTQYDEC 324
           G+ N  +W +F    V HL+   SDHCP+ ++ +  G   + G +  FRF   W     C
Sbjct: 181 GVANTRWWELFPNFEVCHLQHSFSDHCPLVVNTNRNGVRGNNGQKWHFRFNADWLLNPRC 240

BLAST of Lag0006275 vs. NCBI nr
Match: XP_038697213.1 (uncharacterized protein LOC119994946 [Tripterygium wilfordii])

HSP 1 Score: 190.3 bits (482), Expect = 2.6e-44
Identity = 95/258 (36.82%), Postives = 141/258 (54.65%), Query Frame = 0

Query: 100 IKIICWNVRGVGNPRAFNSLRQLVREEDPQLLFLSETKIKSSKASVLKEKLRY------- 159
           +KII WN RG+G+PR  ++L ++V+   P +LFLSET++ SS +  L+ KL++       
Sbjct: 1   MKIILWNCRGLGHPRTVHALLRMVQHHSPDILFLSETRLSSSSSERLRLKLQFNFCFPVL 60

Query: 160 --------------------------HVDSVVKSKDG-HWRFTGFYGDPEVRNRKCSWEL 219
                                     H+D+V+  +D   WRFTG YG P   +R   W L
Sbjct: 61  RSGLGGGLLVMWNASCPLTVSSFSSSHIDTVINLQDALSWRFTGIYGSPSTGSRPAFWSL 120

Query: 220 MRRLNDLPSMPWVLGGDFNELLSSEKKQGGNARDQGQKQEFRDVIDDCGLTDMMFRGHPF 279
           +RRL    S+PWV GGDFNE+LS+ +  G N R +   Q FRD + DC L D+ + G+ F
Sbjct: 121 LRRLAAASSLPWVCGGDFNEILSNSEIAGSNGRAEYLMQNFRDALQDCALCDIGYSGYSF 180

Query: 280 TWFKLKNGRVTMQERLDRGLCNDSFWMMFLFSTVSHLKFRLSDHCPVRIDVDSCGGLASR 324
           TW   ++G   ++ERLDR + +DS+   FL + + HL    SDH P+ + +     +++R
Sbjct: 181 TWSNNRSGTALVEERLDRVVSSDSWSQQFLGAYLRHLASPASDHSPLLLTISRGPTISNR 240

BLAST of Lag0006275 vs. NCBI nr
Match: KAF5477448.1 (hypothetical protein F2P56_004088 [Juglans regia])

HSP 1 Score: 184.1 bits (466), Expect = 1.9e-42
Identity = 104/246 (42.28%), Postives = 134/246 (54.47%), Query Frame = 0

Query: 97  PSGIKIICWNVRGVGNPRAFNSLRQLVREEDPQLLFLSETKI-----KSSKASV------ 156
           P+ IK +CWN RG+GNP    +LR L+  E P LLFL ETK+      S   S+      
Sbjct: 39  PTTIKTLCWNSRGLGNPLGIRALRDLITREGPDLLFLQETKLIARVGHSGGLSLLWNFEL 98

Query: 157 ---LKEKLRYHVDSVVKSKD-GHWRFTGFYGDPEVRNRKCSWELMRRLNDLPSMPWVLGG 216
              LK   RYH+D  VK  D   WRFTG YG+PE  NR  +W L+R L+ +  +PW+LGG
Sbjct: 99  GIELKSYSRYHIDVHVKMDDLREWRFTGIYGNPEASNRVSTWNLIRTLHSIEQIPWLLGG 158

Query: 217 DFNELLSSEKKQGGNARDQGQKQEFRDVIDDCGLTDMMFRGHPFTWFKLKNGRVTMQERL 276
           DFNE+L   +K GG  R   Q   FR+++  C L D+ FRG  FTW+  + G   + ERL
Sbjct: 159 DFNEVLYLHEKWGGRPRSNTQIGAFRELLFVCELRDLGFRGPNFTWWNGREGAEHISERL 218

Query: 277 DRGLCNDSFWMMFLFSTVSHLKFRLSDHCPVRIDVDSCGGLASRGCRPLFR----FEEVW 324
           DR L N SF+ +F  + V +     SDH PV  D      L SR  RPL R    FE +W
Sbjct: 219 DRYLGNSSFYCLFSLAVVLNGTVAYSDHLPVVFD-----SLYSRP-RPLVRRPFCFEAMW 278

BLAST of Lag0006275 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 77.0 bits (188), Expect = 4.3e-13
Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 1    MEGPMEIFVDNKSAIALAKNPVFHGRSKHIDTRFHYIRDCFANKEVELKYIKSQDQAADI 60
            +E P++I+ DN+  I++A NP  H R+KHID ++H+ R+   N  + L+YI +++Q ADI
Sbjct: 1322 LENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADI 1381

Query: 61   FTKSLKLETFIRMRSLLGV 80
            FTK L    F+ +R  LG+
Sbjct: 1382 FTKPLPAARFVELRDKLGL 1400

BLAST of Lag0006275 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.1e-08
Identity = 30/77 (38.96%), Postives = 41/77 (53.25%), Query Frame = 0

Query: 4    PMEIFVDNKSAIALAKNPVFHGRSKHIDTRFHYIRDCFANKEVELKYIKSQDQAADIFTK 63
            P  I+ DN  A  L  NPVFH R KHI   +H+IR+   +  + + ++ + DQ AD  TK
Sbjct: 1385 PPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTK 1444

Query: 64   SLKLETFIRMRSLLGVT 81
             L    F    S +GVT
Sbjct: 1445 PLSRTAFQNFASKIGVT 1461

BLAST of Lag0006275 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.2e-08
Identity = 25/73 (34.25%), Postives = 48/73 (65.75%), Query Frame = 0

Query: 7    IFVDNKSAIALAKNPVFHGRSKHIDTRFHYIRDCFANKEVELKYIKSQDQAADIFTKSLK 66
            ++ D++SAI L+KN ++H R+KHID R+H+IR+   ++ +++  I + +  AD+ TK + 
Sbjct: 1253 VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVP 1312

Query: 67   LETFIRMRSLLGV 80
               F   + L+G+
Sbjct: 1313 RNKFELCKELVGM 1325

BLAST of Lag0006275 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.8e-07
Identity = 28/76 (36.84%), Postives = 39/76 (51.32%), Query Frame = 0

Query: 4    PMEIFVDNKSAIALAKNPVFHGRSKHIDTRFHYIRDCFANKEVELKYIKSQDQAADIFTK 63
            P  I+ DN  A  L  NPVFH R KHI   +H+IR+   +  + + ++ + DQ AD  TK
Sbjct: 1368 PPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTK 1427

Query: 64   SLKLETFIRMRSLLGV 80
             L    F      +GV
Sbjct: 1428 PLSRVAFQNFSRKIGV 1443

BLAST of Lag0006275 vs. ExPASy TrEMBL
Match: A0A445IYM0 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Glycine soja OX=3848 GN=D0Y65_023564 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.0e-45
Identity = 111/269 (41.26%), Postives = 154/269 (57.25%), Query Frame = 0

Query: 2   EGPMEIFVDNKSAIALAKNPVFHGRSKHIDTRFHYIRDCFANKEVELKYIKSQDQAADIF 61
           E PMEI VD+K A+ALAKNPVFH RSKHIDTR+H+IR+C   KEV+LKY+ SQDQ ADIF
Sbjct: 221 EKPMEICVDDKLALALAKNPVFHERSKHIDTRYHFIRECIEKKEVKLKYVMSQDQVADIF 280

Query: 62  TKSLKLETFIRMRSLLGVTNQVNEEVVWHNI---ILRSPSGIKIICWNVRGVGNPRAFNS 121
           TK LKLETF+++RS+LGVTNQV   V W  +         G  I+           A + 
Sbjct: 281 TKPLKLETFVKLRSMLGVTNQV--VVYWKELRGFEYGEDEGQAIL-----------AVSV 340

Query: 122 LRQLVREEDPQLLFLSETKIKSSKASVLKEKLRYHVDSVVKSKDGHWRFTGFYGDPEVRN 181
           LR LVR +   ++FLS   +++S    +  KL +     +   D   R  G+YG  + R 
Sbjct: 341 LRDLVRVQKSDMVFLSMMLVQASCIEDIHIKLGFENGFAIDRID---RSGGYYGIVDHRR 400

Query: 182 RKCSWELMRRLNDLPSMPWVLGGDFNELLSSEKKQGGNARDQGQKQEFRDVIDDCGLTDM 241
            K SW+L+R +      PW + GDFN++L  E K G         Q FR+ + + G+ D+
Sbjct: 401 MKESWDLLRSVVACIQDPWCVIGDFNDILVDEDKCGRVPHPFWFLQGFREAVSNRGVLDI 460

Query: 242 MFRGHPFTWFKLKNGRVTMQERLDRGLCN 268
              G+P+TW   +     ++E+LD  + N
Sbjct: 461 TLEGYPYTWGHCRGSNNAVKEKLDHTMVN 473

BLAST of Lag0006275 vs. ExPASy TrEMBL
Match: A0A5B6VIZ4 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_014842 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.3e-44
Identity = 92/240 (38.33%), Postives = 137/240 (57.08%), Query Frame = 0

Query: 100 IKIICWNVRGVGNPRAFNSLRQLVREEDPQLLFLSETKIKSSKASVLKEKLRY------- 159
           +KI+ WNVRG+G  R    L+  +R   PQ++FL ETK+ S +   ++ +  +       
Sbjct: 1   MKILSWNVRGLGQSRTVRRLKNKLRHIQPQIVFLIETKVTSRRMDSIRRRCGFANGIDVE 60

Query: 160 -------HVDSVVKSKDG--HWRFTGFYGDPEVRNRKCSWELMRRLNDLPSMPWVLGGDF 219
                  H+D VV+ +DG   WRFTGFYG+P   NR+ SWEL+R L +  ++PW++ GDF
Sbjct: 61  ATGSRGSHIDVVVEEEDGAKTWRFTGFYGEPVEHNRRTSWELLRGLQNGNNLPWLVAGDF 120

Query: 220 NELLSSEKKQGGNARDQGQKQEFRDVIDDCGLTDMMFRGHPFTWFKLKNGRVTMQERLDR 279
           NE+L S +KQGG  R++ Q   FR  +DDC L D+ F G  +TW + +     ++ERLDR
Sbjct: 121 NEILFSFEKQGGQIREERQMDAFRKTLDDCELADLGFSGQWYTWERGRLVSNNIRERLDR 180

Query: 280 GLCNDSFWMMFLFSTVSHLKFRLSDHCPVRIDVDSCGGLASRGCRPLFRFEEVWTQYDEC 324
           G+ N  +W +F    V HL+   SDHCP+ ++ +  G   + G +  FRF   W     C
Sbjct: 181 GVANTRWWELFPNFEVCHLQHSFSDHCPLVVNTNRNGVRGNNGQKWHFRFNADWLLNPRC 240

BLAST of Lag0006275 vs. ExPASy TrEMBL
Match: A0A2N9G5I8 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22700 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-43
Identity = 97/233 (41.63%), Postives = 135/233 (57.94%), Query Frame = 0

Query: 98  SGIKIICWNVRGVGNPRAFNSLRQLVREEDPQLLFLSETKIKSSKASVLKEKLRYHV--- 157
           S +  I WN RG+GNP     L +LVRE+DP +LF+ ET +  ++  VL+ KL + +   
Sbjct: 371 SPMSYIAWNCRGLGNPCTVQELFRLVREQDPLVLFVVETGLDEARLEVLRCKLHFSIIPC 430

Query: 158 ---DSVV-KSKDGHWRFTGFYGDPEVRNRKCSWELMRRLNDLPSMPWVLGGDFNELLSSE 217
              D+V+ + K+  WRFTGFYG PE   R  SW L++  +   S+PW+  GDFNELLS +
Sbjct: 431 ITFDTVINEGKEDAWRFTGFYGAPETHRRHLSWTLLQSFHQQFSLPWLCMGDFNELLSMD 490

Query: 218 KKQGGNARDQGQKQEFRDVIDDCGLTDMMFRGHPFTWFKLKNGRVTMQERLDRGLCNDSF 277
           +KQGG  R   Q Q+FRD +D+CG  D+ ++G PFTW   +    T+ ERLDRGL    +
Sbjct: 491 EKQGGPVRSSRQMQDFRDAVDECGFMDLGYQGPPFTWCNNRVDCGTVWERLDRGLATIPW 550

Query: 278 WMMFLFSTVSHLKFRLSDHCPVRIDVDSCGGLASRGCRPLFRFEEVWTQYDEC 324
           + +F  + V HL    SDH P+ + V +           LFRFEEVW     C
Sbjct: 551 FNIFPEARVFHLHATNSDHYPICL-VTNPAHTPPGAKHRLFRFEEVWLSNPGC 602

BLAST of Lag0006275 vs. ExPASy TrEMBL
Match: A0A2N9H936 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36135 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 7.0e-43
Identity = 94/261 (36.02%), Postives = 138/261 (52.87%), Query Frame = 0

Query: 97  PSGIKIICWNVRGVGNPRAFNSLRQLVREEDPQLLFLSETKIKSSKASVLK--------- 156
           P  +  + WN RG+GNP+  + L  +VR++DP +LFLSETK+   +  VL+         
Sbjct: 389 PEAMSCLFWNCRGLGNPQTVHELTVMVRQKDPLVLFLSETKLGEQQLEVLRCYWGFVGKF 448

Query: 157 ------------------------EKLRYHVDSVVK-SKDGHWRFTGFYGDPEVRNRKCS 216
                                       +H+D+++    +  WRFTGFYG P V  +  +
Sbjct: 449 VVPSRGQSGGLAMFWRSDIMVSISSYSHHHIDALMDFDAETVWRFTGFYGSPTVSGKLAA 508

Query: 217 WELMRRLNDLPSMPWVLGGDFNELLSSEKKQGGNARDQGQKQEFRDVIDDCGLTDMMFRG 276
           W+L+R L    ++PW+ GGDFNE+L +E+K G  AR   Q   FR V+DDCG  D+ F G
Sbjct: 509 WDLLRVLRGHHTLPWLCGGDFNEILQAEEKWGRVARPDSQMSAFRRVVDDCGFVDLGFVG 568

Query: 277 HPFTWFKLKNGRVTMQERLDRGLCNDSFWMMFLFSTVSHLKFRLSDHCPVRIDVDSCGGL 324
            P+TW+  + G   + ERLDR L    + + F  S V+HL    SDH P+ +++  C G 
Sbjct: 569 SPYTWWNKQTGPAWVLERLDRCLATADWVLKFPTSRVNHLHSVFSDHRPLWVELSLC-GR 628

BLAST of Lag0006275 vs. ExPASy TrEMBL
Match: A0A2N9EVJ2 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6471 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 9.2e-43
Identity = 104/267 (38.95%), Postives = 145/267 (54.31%), Query Frame = 0

Query: 63  KSLKLETFIRMRSLLGVTNQVNEEVVWHNII------LRSPSGIKIICWNVRGVGNPRAF 122
           +SL ++  I    L+   NQ N E ++ N        +  P  +  I WN RG+GNP   
Sbjct: 295 ESLSIDPRIPPIILIEERNQSNGERIFENHTNPGQHEVPPPIPMSYIAWNCRGLGNPCTV 354

Query: 123 NSLRQLVREEDPQLLFLSETKIKSSKASVLKEKLRYHVDSVVKSKDGHWRFTGFYGDPEV 182
             L +LVRE+DP +L + ET +  ++  V    LRY +  + +  D  WRFTGFYG PE 
Sbjct: 355 QELFRLVREQDPLVLSVVETGLDEARLEV----LRYTI--INEGWDDAWRFTGFYGAPET 414

Query: 183 RNRKCSWELMRRLNDLPSMPWVLGGDFNELLSSEKKQGGNARDQGQKQEFRDVIDDCGLT 242
             R  SW L++ L+   ++PW+  GDFN+LLS E+KQGG  R   Q Q+FRD ID+CG  
Sbjct: 415 HKRHLSWTLLQSLHQQFTLPWLCIGDFNKLLSMEEKQGGPVRSSRQMQDFRDAIDECGFV 474

Query: 243 DMMFRGHPFTWFKLKNGRVTMQERLDRGLCNDSFWMMFLFSTVSHLKFRLSDHCPVRIDV 302
           D+ ++G PFTW   +    T+ ERLDRGL    +  MF  + + HL    SDH P+ + V
Sbjct: 475 DLGYQGAPFTWCNNRVDSGTVWERLDRGLATTPWLNMFPEARIIHLHASNSDHYPICL-V 534

Query: 303 DSCGGLASRGCRPLFRFEEVWTQYDEC 324
            +      R    LF+FEEVW     C
Sbjct: 535 PTPEHSLPRAKHRLFKFEEVWLSNPGC 554

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RZB91206.14.1e-4541.26Retrovirus-related Pol polyprotein from transposon RE1 [Glycine soja][more]
KAF5443558.17.0e-4539.38hypothetical protein F2P56_036105, partial [Juglans regia][more]
KAA3469008.12.6e-4438.33reverse transcriptase [Gossypium australe][more]
XP_038697213.12.6e-4436.82uncharacterized protein LOC119994946 [Tripterygium wilfordii][more]
KAF5477448.11.9e-4242.28hypothetical protein F2P56_004088 [Juglans regia][more]
Match NameE-valueIdentityDescription
P041464.3e-1341.77Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q94HW24.1e-0838.96Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P109789.2e-0834.25Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Q9ZT947.8e-0736.84Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A445IYM02.0e-4541.26Retrovirus-related Pol polyprotein from transposon RE1 OS=Glycine soja OX=3848 G... [more]
A0A5B6VIZ41.3e-4438.33Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_014842 PE=4 SV=1[more]
A0A2N9G5I81.1e-4341.63Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9H9367.0e-4336.02Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36135 PE=4 SV=1[more]
A0A2N9EVJ29.2e-4338.95Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 96..296
e-value: 3.9E-28
score: 100.8
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 98..296
NoneNo IPR availablePANTHERPTHR33710:SF41BNAC03G48920D PROTEINcoord: 152..298
NoneNo IPR availablePANTHERPTHR33710BNAC02G09200D PROTEINcoord: 152..298
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 2..65
e-value: 6.34132E-33
score: 116.799

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006275.1Lag0006275.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016740 transferase activity