Lag0006267 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006267
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	La-related protein 6 isoform 1
Location	chr6: 40313404 .. 40315341 (-)
RNA-Seq Expression	Lag0006267
Synteny	Lag0006267

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATTAGCCGCATCGCAACTCAGCTTCCTCGCCAACACCCTCTCCCTCTCCTTCTCCTCCGCCCGCAGCCCCCGCCGGACCCACAACCTTCTCCGTTCTTCCAATCCCGTCGTCGCCTCTAAACTCCCTCCCGCCGCCGATCATCCAAAGTAACTTCCATTGCGTCTCTGTTTTCAGTCGTTTAGGTTTCTGATTGATTCAACTGATTTCTGATTTTTGATGTATAGGGGAAATGAGAATCGGCTCGCGAAGCTCGCGATTGTTACTCTGGCGGCTGGGGTTTTGACGTTGGGATCGGTTCACGATGCATCGGCCGCCAAGACCGGCGGCCGAATCGGCGGCCAGGCCTTCCGGTCGGCGGCTCCTCGGCCTTCTTCGCCCAGAATCAACAATAATTCGAGGTATTATGAAAGATTGGTAGTAATTAGCTTTCAATTTTCTTAGTTGGGTTTTATGATTGGCTTCAACTTTGGTGCTCTGCTGAGAACAGAAAGTCATGAACTCTTACAGTAGTTTATTTATTTTTTTAAGTACATATTTTAATTTTGTATCTACTTCATTTATTTAATGAGTAAGTTCTTTTCCAAGTTTAGTTTAATAAGTCAAATGTCTGAGTTCTTAAATGACCTTAGATTTTGTTTAGTTGTTAATTAATGTTGAAAGAGTTTGATTAATTTTCGATTAAATTACATAAGTGATTGCTATGGTTTGAGTTTAGTTTCAATTTTGTTTCTATTTTTAAGTTGGCTTCTGTCATTTTAAAACCCAAATATCATTTTTAAAAAATCATTTTAAAAGTTTCAATTTTTTTTTAATGGTTTAGACTCAGTTTTATTAAAAATTTTAATTTGATAGTGGTGGTTTAAAAAGTTTTGATATAGTTGTCCAATTAAATAGGATGTATATGTTTTGAGTTTAAGGAGCTAGTTGTTAGGACTTAGAGGAGTAAAAAGAGGAGAAAAGAGATATCAGTTAATGGACAATTTGAGATATTTAAAATTGTAGGGACCAAATTGGAACTATACACAAAATTATTATACCAAAAACAATACACAAATTATAGAGGACCAAATTGGAACTTTTTAAACTAAAGGGATCAAATTGAAATTTAGTCCAAACCAATTCGATAATTTAACTCAGTTTTTTATCCAAAGTTTTCAAAGACTAAATCAAAAAAATTTGAATATCGCGGGACTAGAATAAAACATTTGACAATTCATGGTAGTCTCCTACCTAGGATATAATATCCTACATATTTCCTATCAATCAAATGTAGTAGAGTCAAGTGATCATCCTATGAGATTAGTCGAGGTGCACATAAGTTGGTTCAAATGCCCATGAATATTAAAAAAAAAAATTAAAACATTTAGAAAATTTAGGAATCTAAATAGAATTTATGTTTATATACTTTTCCAACCATAGTATCAGCTATTAAGGACTCACTTCTTAGTTCTTATGCTATACTCATGCTATACTCATAGCCCACCCTACTAATTTTTGGAAAAGCTTCGACTACGTCAAGGTCAGCTCTATGAACTTAGAGCTTGAACCTTAGGGGTTCGAAAGATGATATCTCTAAACATTTCAGGCCTTTAGTTCAAGTGTCGATCTTTGGAGCGAAATAAACTTATCTTTTAAATAGAAATGATTGAATAAAAGGTATGTTGTGTTTAAATTTGCAGAACAAATATCTACATAAACCCAAGAGTAGCACCTCCTTTAGTAGGTGGCTATGGGTTTGGGTATGGTGTGCCATACTATGGAGGATGGGGATGGTCACCATTTTCATTCTTTGCACCAGGCCCAAGTGTTGCTGTTGGCATTGGAGGAGGTTTTGATGTTCTTGTTCTCTTCATTTTTCTTGGAACTGTTGCAGCCTTTGTCAGAAGATTCTTTGGAAGAAGGGAACAAGATTATGATGATGATGATTATTAA

mRNA sequence

ATGCCATTAGCCGCATCGCAACTCAGCTTCCTCGCCAACACCCTCTCCCTCTCCTTCTCCTCCGCCCGCAGCCCCCGCCGGACCCACAACCTTCTCCGTTCTTCCAATCCCGTCGTCGCCTCTAAACTCCCTCCCGCCGCCGATCATCCAAAGGGAAATGAGAATCGGCTCGCGAAGCTCGCGATTGTTACTCTGGCGGCTGGGGTTTTGACGTTGGGATCGGTTCACGATGCATCGGCCGCCAAGACCGGCGGCCGAATCGGCGGCCAGGCCTTCCGGTCGGCGGCTCCTCGGCCTTCTTCGCCCAGAATCAACAATAATTCGAGAACAAATATCTACATAAACCCAAGAGTAGCACCTCCTTTAGTAGGTGGCTATGGGTTTGGGTATGGTGTGCCATACTATGGAGGATGGGGATGGTCACCATTTTCATTCTTTGCACCAGGCCCAAGTGTTGCTGTTGGCATTGGAGGAGGTTTTGATGTTCTTGTTCTCTTCATTTTTCTTGGAACTGTTGCAGCCTTTGTCAGAAGATTCTTTGGAAGAAGGGAACAAGATTATGATGATGATGATTATTAA

Coding sequence (CDS)

ATGCCATTAGCCGCATCGCAACTCAGCTTCCTCGCCAACACCCTCTCCCTCTCCTTCTCCTCCGCCCGCAGCCCCCGCCGGACCCACAACCTTCTCCGTTCTTCCAATCCCGTCGTCGCCTCTAAACTCCCTCCCGCCGCCGATCATCCAAAGGGAAATGAGAATCGGCTCGCGAAGCTCGCGATTGTTACTCTGGCGGCTGGGGTTTTGACGTTGGGATCGGTTCACGATGCATCGGCCGCCAAGACCGGCGGCCGAATCGGCGGCCAGGCCTTCCGGTCGGCGGCTCCTCGGCCTTCTTCGCCCAGAATCAACAATAATTCGAGAACAAATATCTACATAAACCCAAGAGTAGCACCTCCTTTAGTAGGTGGCTATGGGTTTGGGTATGGTGTGCCATACTATGGAGGATGGGGATGGTCACCATTTTCATTCTTTGCACCAGGCCCAAGTGTTGCTGTTGGCATTGGAGGAGGTTTTGATGTTCTTGTTCTCTTCATTTTTCTTGGAACTGTTGCAGCCTTTGTCAGAAGATTCTTTGGAAGAAGGGAACAAGATTATGATGATGATGATTATTAA

Protein sequence

MPLAASQLSFLANTLSLSFSSARSPRRTHNLLRSSNPVVASKLPPAADHPKGNENRLAKLAIVTLAAGVLTLGSVHDASAAKTGGRIGGQAFRSAAPRPSSPRINNNSRTNIYINPRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPGPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFFGRREQDYDDDDY

Homology

[Close]

BLAST of Lag0006267 vs. NCBI nr
Match: XP_038889538.1 (uncharacterized protein LOC120079434 isoform X2 [Benincasa hispida])

HSP 1 Score: 310.1 bits (793), Expect = 1.4e-80
Identity = 164/192 (85.42%), Postives = 173/192 (90.10%), Query Frame = 0


Query: 1   MPLAASQLSFLANTLSLSFSSARSPRRTHNLLRSSNPVVASKLPPAADHPKGNENRLAKL 60
           M LA+SQLSFL+   S SF S R+PRRT+NLL SSN  V+ KLPPAAD PKG+ENRLAKL
Sbjct: 1   MSLASSQLSFLSTAFSFSF-SVRTPRRTNNLLHSSNAGVSCKLPPAADDPKGSENRLAKL 60

Query: 61  AIVTLAAGVLTLGSVHDASAAKTGGRIGGQAFRSAAPRPSSPRINNNSRTNIYINPRVAP 120
           AIVTLAAGVLTLGSVHDASAAKTGGR+GGQAFRSAAPR SSPRINNNSRTNIYINPRVAP
Sbjct: 61  AIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRVAP 120

Query: 121 PLVGGYGFGYGVPYYGGWGWSPFSFFAPGPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFF 180
           PLVGGYGFGYGVPYYGGWGWSPFSFFAP P+VAVGIGGGFD+L LFI LGTVAAFVRRFF
Sbjct: 121 PLVGGYGFGYGVPYYGGWGWSPFSFFAPSPAVAVGIGGGFDLLFLFILLGTVAAFVRRFF 180

Query: 181 GRREQDYDDDDY 193
           GRRE   DDDDY
Sbjct: 181 GRRE---DDDDY 188

[Close]

BLAST of Lag0006267 vs. NCBI nr
Match: XP_038889537.1 (uncharacterized protein LOC120079434 isoform X1 [Benincasa hispida])

HSP 1 Score: 302.8 bits (774), Expect = 2.2e-78
Identity = 163/197 (82.74%), Postives = 173/197 (87.82%), Query Frame = 0


Query: 1   MPLAASQLSFLANTLSLSFSSARSPRRTHNLLRSSNPVVASKLPPAADHP-----KGNEN 60
           M LA+SQLSFL+   S SF S R+PRRT+NLL SSN  V+ KLPPAAD P     +G+EN
Sbjct: 1   MSLASSQLSFLSTAFSFSF-SVRTPRRTNNLLHSSNAGVSCKLPPAADDPNGLLNRGSEN 60

Query: 61  RLAKLAIVTLAAGVLTLGSVHDASAAKTGGRIGGQAFRSAAPRPSSPRINNNSRTNIYIN 120
           RLAKLAIVTLAAGVLTLGSVHDASAAKTGGR+GGQAFRSAAPR SSPRINNNSRTNIYIN
Sbjct: 61  RLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYIN 120

Query: 121 PRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPGPSVAVGIGGGFDVLVLFIFLGTVAAF 180
           PRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAP P+VAVGIGGGFD+L LFI LGTVAAF
Sbjct: 121 PRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPAVAVGIGGGFDLLFLFILLGTVAAF 180

Query: 181 VRRFFGRREQDYDDDDY 193
           VRRFFGRRE   DDDDY
Sbjct: 181 VRRFFGRRE---DDDDY 193

[Close]

BLAST of Lag0006267 vs. NCBI nr
Match: XP_022969609.1 (uncharacterized protein LOC111468585 [Cucurbita maxima])

HSP 1 Score: 296.2 bits (757), Expect = 2.0e-76
Identity = 163/197 (82.74%), Postives = 176/197 (89.34%), Query Frame = 0


Query: 1   MPLAASQLSFLANTLSLSFSSARSPRRTHNLLRSSNPVVASKLPPAADHP----KGNENR 60
           M LA+SQLSFL+ T  LSFSSA +PRR++N+L S +P++ASKLPP AD+P    +GNENR
Sbjct: 1   MSLASSQLSFLSTT--LSFSSAPTPRRSNNILHSFHPIIASKLPPPADNPNGLERGNENR 60

Query: 61  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRIGGQAFRSAAPRPSSPRINNNSRTNIYINP 120
           LAKLAIVTLAAGVLTLGSVHDASAAKTGGR+GGQAFRSAAPR SSPRINNNSRTNIYINP
Sbjct: 61  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 120

Query: 121 RVAPPLVGGYGFGYGVPYY-GGWGWSPFSFFAPGPSVAVGIGGGFDVLVLFIFLGTVAAF 180
           RVAPPLVGGY  GYGVPYY GGWGWSPFSFFAP PSVAVGIGGGFDVLVLFIFLGTVAAF
Sbjct: 121 RVAPPLVGGY--GYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAF 180

Query: 181 VRRFFGRREQDYDDDDY 193
           VRRF G RE+  DDDDY
Sbjct: 181 VRRFLGGREE--DDDDY 191

[Close]

BLAST of Lag0006267 vs. NCBI nr
Match: XP_023536753.1 (uncharacterized protein LOC111798034 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293.5 bits (750), Expect = 1.3e-75
Identity = 162/197 (82.23%), Postives = 175/197 (88.83%), Query Frame = 0


Query: 1   MPLAASQLSFLANTLSLSFSSARSPRRTHNLLRSSNPVVASKLPPAADHP----KGNENR 60
           M LA+SQLSFL+ T  LSFSSA +PRR++N+L S +P++ASKLPP AD P    +GNENR
Sbjct: 1   MSLASSQLSFLSTT--LSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENR 60

Query: 61  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRIGGQAFRSAAPRPSSPRINNNSRTNIYINP 120
           LAKLAIVTLAAGVL+LGSVHDASAAKTGGR+GGQAFRSAAPR SSPRINNNSRTNIYINP
Sbjct: 61  LAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 120

Query: 121 RVAPPLVGGYGFGYGVPYY-GGWGWSPFSFFAPGPSVAVGIGGGFDVLVLFIFLGTVAAF 180
           RVAPPLVGGY  GYGVPYY GGWGWSPFSFFAP PSVAVGIGGGFDVLVLFIFLGTVAAF
Sbjct: 121 RVAPPLVGGY--GYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAF 180

Query: 181 VRRFFGRREQDYDDDDY 193
           VRRF G R +D DDDDY
Sbjct: 181 VRRFLGGRGED-DDDDY 192

[Close]

BLAST of Lag0006267 vs. NCBI nr
Match: XP_022153287.1 (uncharacterized protein LOC111020818 [Momordica charantia])

HSP 1 Score: 292.0 bits (746), Expect = 3.8e-75
Identity = 160/200 (80.00%), Postives = 168/200 (84.00%), Query Frame = 0


Query: 1   MPLAASQLSFLANTLS-LSFSSARSPRRTHNLLRSSNPVVASKLPPAAD-------HPKG 60
           M LA+SQ SFL N LS  + ++AR PRR   LL SSN  V+SKLPPA D          G
Sbjct: 1   MALASSQQSFLTNVLSAAAAAAARCPRRMRKLLHSSNAAVSSKLPPADDPDGFSFKSGSG 60

Query: 61  NENRLAKLAIVTLAAGVLTLGSVHDASAAKTGGRIGGQAFRSAAPRPSSPRINNNSRTNI 120
           NENRLAKLAIVTLAAGVLTLGSVHDASAAKTGGR+GGQAFRSAAPRPSSPRINNNSRTNI
Sbjct: 61  NENRLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNI 120

Query: 121 YINPRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPGPSVAVGIGGGFDVLVLFIFLGTV 180
           YINP VAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPGPSVAVGIGGGFD+L LFIFLG+V
Sbjct: 121 YINPPVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPGPSVAVGIGGGFDLLFLFIFLGSV 180

Query: 181 AAFVRRFFGRREQDYDDDDY 193
           AA VRRFFG RE   DDDDY
Sbjct: 181 AAVVRRFFGTRED--DDDDY 198

The following BLAST results are available for this feature:

BLAST of Lag0006267 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889538.1	1.4e-80	85.42	uncharacterized protein LOC120079434 isoform X2 [Benincasa hispida]	[more]
XP_038889537.1	2.2e-78	82.74	uncharacterized protein LOC120079434 isoform X1 [Benincasa hispida]	[more]
XP_022969609.1	2.0e-76	82.74	uncharacterized protein LOC111468585 [Cucurbita maxima]	[more]
XP_023536753.1	1.3e-75	82.23	uncharacterized protein LOC111798034 [Cucurbita pepo subsp. pepo]	[more]
XP_022153287.1	3.8e-75	80.00	uncharacterized protein LOC111020818 [Momordica charantia]	[more]

BLAST of Lag0006267 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37768	OS06G0694800 PROTEIN	coord: 1..189
None	No IPR available	PANTHER	PTHR37768:SF2	OS06G0694800 PROTEIN	coord: 1..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006267.1	Lag0006267.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071470	cellular response to osmotic stress
biological_process	GO:0034599	cellular response to oxidative stress
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane