Lag0006255 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006255
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Defensin-like protein
Location	chr6: 40105097 .. 40105439 (+)
RNA-Seq Expression	Lag0006255
Synteny	Lag0006255

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACGCCATCGACCTGACAGCGGGGAATGGAAATATATGTCGGGAAGGGCTAGGGCTATGCAAAAGCGATTGCGACCTAGAGTGCAAAGAAAGGCACAGCCCGACGGAGAACCCTCAAGGTAGCTGCGACCGCATCGGACACGTGGGGCTGTGTGATTGCTTTTATAGTTGCGGCGAGTCGCCACCGGGGAAGGTGTGCCATGACGGGCTAGGGCTGTGCAGCGGCCGGTGCAACAGCGATTGCTGCAATGCTAAATGTGCAAGCTTGCACAATGGAGGGCAGGGCTACTGCGACACCAACGTTGGACTTCCTTTGTGCCAATGCAGCTATCCTTGCTAA

mRNA sequence

ATGGGACGCCATCGACCTGACAGCGGGGAATGGAAATATATGTCGGGAAGGGCTAGGGCTATGCAAAAGCGATTGCGACCTAGAGTGCAAAGAAAGGCACAGCCCGACGGAGAACCCTCAAGTTGCGGCGAGTCGCCACCGGGGAAGGTGTGCCATGACGGGCTAGGGCTGTGCAGCGGCCGGTGCAACAGCGATTGCTGCAATGCTAAATGTGCAAGCTTGCACAATGGAGGGCAGGGCTACTGCGACACCAACGTTGGACTTCCTTTGTGCCAATGCAGCTATCCTTGCTAA

Coding sequence (CDS)

ATGGGACGCCATCGACCTGACAGCGGGGAATGGAAATATATGTCGGGAAGGGCTAGGGCTATGCAAAAGCGATTGCGACCTAGAGTGCAAAGAAAGGCACAGCCCGACGGAGAACCCTCAAGTTGCGGCGAGTCGCCACCGGGGAAGGTGTGCCATGACGGGCTAGGGCTGTGCAGCGGCCGGTGCAACAGCGATTGCTGCAATGCTAAATGTGCAAGCTTGCACAATGGAGGGCAGGGCTACTGCGACACCAACGTTGGACTTCCTTTGTGCCAATGCAGCTATCCTTGCTAA

Protein sequence

MGRHRPDSGEWKYMSGRARAMQKRLRPRVQRKAQPDGEPSSCGESPPGKVCHDGLGLCSGRCNSDCCNAKCASLHNGGQGYCDTNVGLPLCQCSYPC

Homology

[Close]

BLAST of Lag0006255 vs. NCBI nr
Match: KAG7020813.1 (Defensin-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-19
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 46  PPGKVCHDGLGLCSGRCNSDCCNAKCASLHNGGQGYCDTNVGLPLCQCSYPC 98
           PPGKVC DGLG CS +CN+DCC+AKCAS HNGGQGYCDTNVG+ LCQCSYPC
Sbjct: 64  PPGKVCQDGLGQCSAKCNNDCCSAKCASKHNGGQGYCDTNVGIRLCQCSYPC 115

[Close]

BLAST of Lag0006255 vs. NCBI nr
Match: KAG6586037.1 (putative defensin-like protein 180, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-19
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 46  PPGKVCHDGLGLCSGRCNSDCCNAKCASLHNGGQGYCDTNVGLPLCQCSYPC 98
           PPGKVC DGLG CS +CN+DCC+AKCAS HNGGQGYCDTNVG+ LCQCSYPC
Sbjct: 79  PPGKVCQDGLGQCSAKCNNDCCSAKCASKHNGGQGYCDTNVGIRLCQCSYPC 130

[Close]

BLAST of Lag0006255 vs. NCBI nr
Match: TYK13447.1 (defensin-like protein 182 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 3.3e-14
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 47  PGKVCHDGLGLCSGRCNSDCCNAKCASLHNGGQGYCDTNVGLPLCQCSYPC 98
           P + C  GLGLC+G+C SDCCNAKC S + GG+GYCDTNVG+PLCQC++PC
Sbjct: 65  PPQNCISGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVPLCQCTHPC 115

[Close]

BLAST of Lag0006255 vs. NCBI nr
Match: KAA0031758.1 (defensin-like protein 182 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 5.6e-14
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 47  PGKVCHDGLGLCSGRCNSDCCNAKCASLHNGGQGYCDTNVGLPLCQCSYPC 98
           P + C  GLGLC+G+C SDCCNAKC   + GG+GYCDTNVG+PLCQCS+PC
Sbjct: 65  PPQNCISGLGLCTGQCKSDCCNAKCRRQYQGGEGYCDTNVGVPLCQCSHPC 115

[Close]

BLAST of Lag0006255 vs. NCBI nr
Match: XP_004148336.2 (defensin-like protein 182 [Cucumis sativus] >XP_031736571.1 defensin-like protein 182 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 8.9e-12
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 41  SCGESPPGKV----CHDGLGLCSGRCNSDCCNAKCASLHNGGQGYCDTNVGLPLCQCSYP 98
           SC  S P       C  GLGLC+ +C SDCCNAKC   + GG+G+CDTNVG+ LCQCS+P
Sbjct: 71  SCDRSTPMPKPPLNCISGLGLCTAQCKSDCCNAKCGQQYKGGEGFCDTNVGVSLCQCSHP 130

[Close]

BLAST of Lag0006255 vs. ExPASy Swiss-Prot
Match: P82772 (Putative defensin-like protein 180 OS=Arabidopsis thaliana OX=3702 GN=LCR58 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-10
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 46  PPGKVCHDGLGLCSGRCNSDCCNAKCASLHNGGQGYCDTNVGLPLCQCSYPC 98
           P G VC  G G+CSG+C   CC+  CA  +NGG+G+C++      CQC YPC
Sbjct: 76  PKGNVCSGGTGMCSGKCPYKCCDTSCAQKYNGGRGFCNSFGNYNFCQCEYPC 127

[Close]

BLAST of Lag0006255 vs. ExPASy Swiss-Prot
Match: P82789 (Defensin-like protein 181 OS=Arabidopsis thaliana OX=3702 GN=PDF3.1 PE=2 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 3.0e-10
Identity = 27/54 (50.00%), Postives = 32/54 (59.26%), Query Frame = 0


Query: 44  ESPPGKVCHDGLGLCSGRCNSDCCNAKCASLHNGGQGYCDTNVGLPLCQCSYPC 98
           E  P K+C+ GLG C   CN  CC+  CA  +NGG GYC+T     LC C YPC
Sbjct: 69  ECGPTKLCNGGLGNCGESCNEQCCDRNCAQRYNGGHGYCNTLDDFSLCLCKYPC 122

[Close]

BLAST of Lag0006255 vs. ExPASy Swiss-Prot
Match: P82773 (Defensin-like protein 182 OS=Arabidopsis thaliana OX=3702 GN=PDF3.2 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.3e-09
Identity = 27/59 (45.76%), Postives = 32/59 (54.24%), Query Frame = 0


Query: 44  ESPPG-----KVCHDGLGLCSGRCNSDCCNAKCASLHNGGQGYCDTNVGLPLCQCSYPC 98
           ESPP      K C  G G+CS RC   CC+  CA  + GG G+C+T      CQC YPC
Sbjct: 71  ESPPSPPAPPKKCDGGAGICSQRCQGQCCDMNCAQKYIGGHGFCNTLGTFSFCQCEYPC 129

The following BLAST results are available for this feature:

BLAST of Lag0006255 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020813.1	2.0e-19	82.69	Defensin-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6586037.1	2.0e-19	82.69	putative defensin-like protein 180, partial [Cucurbita argyrosperma subsp. soror...	[more]
TYK13447.1	3.3e-14	68.63	defensin-like protein 182 [Cucumis melo var. makuwa]	[more]
KAA0031758.1	5.6e-14	68.63	defensin-like protein 182 [Cucumis melo var. makuwa]	[more]
XP_004148336.2	8.9e-12	57.38	defensin-like protein 182 [Cucumis sativus] >XP_031736571.1 defensin-like protei...	[more]

BLAST of Lag0006255 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82772	2.3e-10	48.08	Putative defensin-like protein 180 OS=Arabidopsis thaliana OX=3702 GN=LCR58 PE=3...	[more]
P82789	3.0e-10	50.00	Defensin-like protein 181 OS=Arabidopsis thaliana OX=3702 GN=PDF3.1 PE=2 SV=2	[more]
P82773	7.3e-09	45.76	Defensin-like protein 182 OS=Arabidopsis thaliana OX=3702 GN=PDF3.2 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006255.1	Lag0006255.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0031640	killing of cells of other organism
cellular_component	GO:0005576	extracellular region