Lag0006249 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006249
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDUF4228 domain-containing protein
Locationchr6: 39960762 .. 39961286 (-)
RNA-Seq ExpressionLag0006249
SyntenyLag0006249
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCTGTCTCTCCCGCCGATCATCCTCCGCCGTCGCCGCCGCTGACAAAATCCAAGTCGTCCACCTCAACGGCCACGTCCAACTCTTCCACACCCCCATCACCGCCCGCCAGGTCGCCGGAAAGCCCCCGCCGCCGGCGGAGTACTTCATCTGCACGGCGGCGATGCTGGTCTCCCCCGCCGCCAGCCCGGCTCTCAACCCCGACGCCGTCCTGCAGCCGGGAAAGGTCTACTTTATGCTCCCGTTCTCCACTCTCCATCCCGACGTTTGTCTCGCAGACCTGGCCTCCATAGCCAGAAGGCTGACCGCCGCCGCCAAATCCGCCGCGAAGACCGGCTCGGCGCCGCCGTGTGGGGGCGCCGGTGGTGGTGGCGAGTGGAAGGGTCCGGCGGCGGCGAGGTCGAGATCACAGTGGAGGCCGTTGTTGGATACGATTAAAGAGAAGCCGGTGAATAATTACCAGAGGAGCGAGTCGGATTTGCAAGAGAAAAATAATAATCGCGGATGTATATGGGAATAA

mRNA sequence

ATGGGTGGCTGTCTCTCCCGCCGATCATCCTCCGCCGTCGCCGCCGCTGACAAAATCCAAGTCGTCCACCTCAACGGCCACGTCCAACTCTTCCACACCCCCATCACCGCCCGCCAGGTCGCCGGAAAGCCCCCGCCGCCGGCGGAGTACTTCATCTGCACGGCGGCGATGCTGGTCTCCCCCGCCGCCAGCCCGGCTCTCAACCCCGACGCCGTCCTGCAGCCGGGAAAGGTCTACTTTATGCTCCCGTTCTCCACTCTCCATCCCGACGTTTGTCTCGCAGACCTGGCCTCCATAGCCAGAAGGCTGACCGCCGCCGCCAAATCCGCCGCGAAGACCGGCTCGGCGCCGCCGTGTGGGGGCGCCGGTGGTGGTGGCGAGTGGAAGGGTCCGGCGGCGGCGAGGTCGAGATCACAGTGGAGGCCGTTGTTGGATACGATTAAAGAGAAGCCGGTGAATAATTACCAGAGGAGCGAGTCGGATTTGCAAGAGAAAAATAATAATCGCGGATGTATATGGGAATAA

Coding sequence (CDS)

ATGGGTGGCTGTCTCTCCCGCCGATCATCCTCCGCCGTCGCCGCCGCTGACAAAATCCAAGTCGTCCACCTCAACGGCCACGTCCAACTCTTCCACACCCCCATCACCGCCCGCCAGGTCGCCGGAAAGCCCCCGCCGCCGGCGGAGTACTTCATCTGCACGGCGGCGATGCTGGTCTCCCCCGCCGCCAGCCCGGCTCTCAACCCCGACGCCGTCCTGCAGCCGGGAAAGGTCTACTTTATGCTCCCGTTCTCCACTCTCCATCCCGACGTTTGTCTCGCAGACCTGGCCTCCATAGCCAGAAGGCTGACCGCCGCCGCCAAATCCGCCGCGAAGACCGGCTCGGCGCCGCCGTGTGGGGGCGCCGGTGGTGGTGGCGAGTGGAAGGGTCCGGCGGCGGCGAGGTCGAGATCACAGTGGAGGCCGTTGTTGGATACGATTAAAGAGAAGCCGGTGAATAATTACCAGAGGAGCGAGTCGGATTTGCAAGAGAAAAATAATAATCGCGGATGTATATGGGAATAA

Protein sequence

MGGCLSRRSSSAVAAADKIQVVHLNGHVQLFHTPITARQVAGKPPPPAEYFICTAAMLVSPAASPALNPDAVLQPGKVYFMLPFSTLHPDVCLADLASIARRLTAAAKSAAKTGSAPPCGGAGGGGEWKGPAAARSRSQWRPLLDTIKEKPVNNYQRSESDLQEKNNNRGCIWE
Homology
BLAST of Lag0006249 vs. NCBI nr
Match: XP_008460258.1 (PREDICTED: uncharacterized protein LOC103499134 [Cucumis melo] >KAA0031747.1 DUF4228 domain-containing protein [Cucumis melo var. makuwa] >TYK08883.1 DUF4228 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 244.2 bits (622), Expect = 8.3e-61
Identity = 131/163 (80.37%), Postives = 142/163 (87.12%), Query Frame = 0

Query: 1   MGGCLSRRSSSAVAAADKIQVVHLNGHVQLFHTPITARQVAGKPPPPAEYFICTAAMLVS 60
           MGGC+S RSSS  AAAD++QVVHLNGHVQ FH+PITARQVA KPPPP EYFICTAA LVS
Sbjct: 1   MGGCVSLRSSSD-AAADRVQVVHLNGHVQHFHSPITARQVARKPPPPTEYFICTAAQLVS 60

Query: 61  PAASPALNPDAVLQPGKVYFMLPFSTLHPDVCLADLASIARRLTAAAKSAAKTGSAPPCG 120
            AASPAL+PDAVLQPGKVYF+LPFSTLHPDV LADLASIARRLTAAAKSAAK+GS PPC 
Sbjct: 61  TAASPALDPDAVLQPGKVYFILPFSTLHPDVSLADLASIARRLTAAAKSAAKSGSLPPCE 120

Query: 121 GAGGGGEWKGPAAARSRSQWRPLLDTIKEKPVNNYQRSESDLQ 164
            A GG EWK  AA +SR QWRPLLDTIKEKP N+ +R ESDL+
Sbjct: 121 TAEGGEEWKCTAAGKSR-QWRPLLDTIKEKPANSCERIESDLE 161

BLAST of Lag0006249 vs. NCBI nr
Match: XP_011650123.1 (uncharacterized protein LOC105434722 [Cucumis sativus])

HSP 1 Score: 243.4 bits (620), Expect = 1.4e-60
Identity = 128/164 (78.05%), Postives = 141/164 (85.98%), Query Frame = 0

Query: 1   MGGCLSRRSSS-AVAAADKIQVVHLNGHVQLFHTPITARQVAGKPPPPAEYFICTAAMLV 60
           MGGC+S RSSS A AAAD++QVVHLNGHVQ FH+PITARQVAG+PPPPAEYFICTAA LV
Sbjct: 1   MGGCISHRSSSTAAAAADRVQVVHLNGHVQHFHSPITARQVAGRPPPPAEYFICTAAQLV 60

Query: 61  SPAASPALNPDAVLQPGKVYFMLPFSTLHPDVCLADLASIARRLTAAAKSAAKTGSAPPC 120
           S AASPALNPD VLQPGKVYF+LP STLHPDV LADLASIARRLTAAAKSAAK+GS PPC
Sbjct: 61  STAASPALNPDVVLQPGKVYFILPLSTLHPDVSLADLASIARRLTAAAKSAAKSGSLPPC 120

Query: 121 GGAGGGGEWKGPAAARSRSQWRPLLDTIKEKPVNNYQRSESDLQ 164
             A GG +W+   A +SR QWRPLLDTI+EKP NN  R +SDL+
Sbjct: 121 EAADGGEDWRCTTAGKSR-QWRPLLDTIREKPGNNCGRIDSDLE 163

BLAST of Lag0006249 vs. NCBI nr
Match: KAG7029841.1 (hypothetical protein SDJN02_08184, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.0 bits (606), Expect = 6.0e-59
Identity = 128/175 (73.14%), Postives = 143/175 (81.71%), Query Frame = 0

Query: 1   MGGCLSRRSSSAVAAADKIQVVHLNGHVQLFHTPITARQVAGKPPPPAEYFICTAAMLVS 60
           MGGC+SRRSSSAVAAAD IQ+VHLNGHVQ FH+PITARQV G  PPPAEYFI TAA LVS
Sbjct: 1   MGGCISRRSSSAVAAADTIQLVHLNGHVQHFHSPITARQVTGSSPPPAEYFISTAAQLVS 60

Query: 61  PAASPALNPDAVLQPGKVYFMLPFSTLHPDVCLADLASIARRLTAAAKSAAKTGSAPPCG 120
            A SPALNPDA+LQPGKVYF+LPFSTLHPDV  +DL+SIAR+LTAAAKSA +    PPC 
Sbjct: 61  LAVSPALNPDAILQPGKVYFLLPFSTLHPDVSPSDLSSIARKLTAAAKSAPR----PPCV 120

Query: 121 GAGGGGEWKGPAAARSRSQWRPLLDTIKEKPVNNYQRSESDLQEK-NNNRGCIWE 175
             GGG  WK P  A+SR QW+P LDTI+EK VN   +SESDLQ+K NNNR CIW+
Sbjct: 121 AVGGGDGWKAPTTAKSR-QWKPFLDTIQEKAVN---KSESDLQDKHNNNRVCIWD 167

BLAST of Lag0006249 vs. NCBI nr
Match: XP_022996489.1 (uncharacterized protein LOC111491721 [Cucurbita maxima])

HSP 1 Score: 235.0 bits (598), Expect = 5.0e-58
Identity = 127/175 (72.57%), Postives = 143/175 (81.71%), Query Frame = 0

Query: 1   MGGCLSRRSSSAVAAADKIQVVHLNGHVQLFHTPITARQVAGKPPPPAEYFICTAAMLVS 60
           MG C+SRRSSSAVAAAD IQ+VHLNGHVQ FH+PITA QV G  PPPAEYFI TAA LVS
Sbjct: 1   MGVCISRRSSSAVAAADTIQLVHLNGHVQHFHSPITASQVTGNSPPPAEYFISTAAQLVS 60

Query: 61  PAASPALNPDAVLQPGKVYFMLPFSTLHPDVCLADLASIARRLTAAAKSAAKTGSAPPCG 120
            A SPALNPDA+LQPGKVYF+LPFSTLHPDV  +DL+SIAR+LTAAAKSA +    PPC 
Sbjct: 61  LAVSPALNPDAILQPGKVYFLLPFSTLHPDVSPSDLSSIARKLTAAAKSAPR---PPPCV 120

Query: 121 GAGGGGEWKGPAAARSRSQWRPLLDTIKEKPVNNYQRSESDLQEK-NNNRGCIWE 175
             GGG +WK P AA+SR QW+P LDTI+EK VN   +SESDLQ+K NNNR CIW+
Sbjct: 121 AVGGGNDWKAPVAAKSR-QWKPFLDTIQEKAVN---KSESDLQDKHNNNRICIWD 168

BLAST of Lag0006249 vs. NCBI nr
Match: XP_023547215.1 (uncharacterized protein LOC111806092 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.2 bits (583), Expect = 2.8e-56
Identity = 125/175 (71.43%), Postives = 140/175 (80.00%), Query Frame = 0

Query: 1   MGGCLSRRSSSAVAAADKIQVVHLNGHVQLFHTPITARQVAGKPPPPAEYFICTAAMLVS 60
           MGGC+SRRSSSAVAAAD IQ+VHLNGHVQ FH PITARQV G  P PAEYFI TAA LVS
Sbjct: 1   MGGCISRRSSSAVAAADTIQLVHLNGHVQHFHIPITARQVTGNSPRPAEYFISTAAQLVS 60

Query: 61  PAASPALNPDAVLQPGKVYFMLPFSTLHPDVCLADLASIARRLTAAAKSAAKTGSAPPCG 120
            A SPALNPDA+LQPGKVYF+LPFSTLHPDV  +DL+SIAR+LTAAAKSA +    P C 
Sbjct: 61  VAVSPALNPDAILQPGKVYFLLPFSTLHPDVSPSDLSSIARKLTAAAKSAPR----PTCV 120

Query: 121 GAGGGGEWKGPAAARSRSQWRPLLDTIKEKPVNNYQRSESDLQEK-NNNRGCIWE 175
             GGG +WK PA +R   QW+P LDTI+EK VN   +SESDLQ+K NNNR CIW+
Sbjct: 121 AVGGGDDWKTPAKSR---QWKPFLDTIQEKAVN---KSESDLQDKHNNNRVCIWD 165

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008460258.18.3e-6180.37PREDICTED: uncharacterized protein LOC103499134 [Cucumis melo] >KAA0031747.1 DUF... [more]
XP_011650123.11.4e-6078.05uncharacterized protein LOC105434722 [Cucumis sativus][more]
KAG7029841.16.0e-5973.14hypothetical protein SDJN02_08184, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022996489.15.0e-5872.57uncharacterized protein LOC111491721 [Cucurbita maxima][more]
XP_023547215.12.8e-5671.43uncharacterized protein LOC111806092 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025322Protein of unknown function DUF4228, plantPFAMPF14009DUF4228coord: 1..149
e-value: 7.4E-24
score: 85.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..174
NoneNo IPR availablePANTHERPTHR33052DUF4228 DOMAIN PROTEIN-RELATEDcoord: 1..162
NoneNo IPR availablePANTHERPTHR33052:SF2OS06G0700300 PROTEINcoord: 1..162

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006249.1Lag0006249.1mRNA