Lag0006144 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006144
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase
Location	chr6: 38191485 .. 38192161 (-)
RNA-Seq Expression	Lag0006144
Synteny	Lag0006144

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGGTGGTTTATGTTTACTGTGGAAAGATGATGTGGATGTCCAAATTCGAAATTTTTTGCGTTACCATGTGGATGCATATATTAAATGGGATAATAAAAAATGGAGATTTACGAGTCTTTATGGTCATCCTGATTCACCCAACGTCATCATACATGGAAACTTTTACGTCGTCTTTACAACTACGATGATTCTCTGTGGCTTATTGGTGGGGATCTCAATGAAATTTTGTGGAGTAATGAGAAATCAAGTGGCTCTGAGTGGGATAGTAATCAACTTTCGACTTTCAGAGAGGTTTTACACGATTGTCATTTACAGGATATGGGCTTCTCTGGAAACATTTTTACTTGGTGTAACAGAAGAGATGCGGGGGCACAAGTGAGTTTGAGATTAGATCGGTTCTTGGCTAATCTTAGTTTCTGCTCCCTTTTTTAGAATTACTAGGTGACTCATTTGGATTGGGCCAAATCGGATCATCGTCCGATTGAATTGTGTTTAAATAGTCTTCCGAATCATCTTGCTCGAGGAAAGCATCGTTCATCATTCAAGTTTGAAGAATGGTGGACACATCACGAGGAATGTAGAAGACTCATTATAAATTCTGGACTATGGGAGCCTGGTAGGGCAAATGAATGTTCTCTTGGGAGAATCTTCAATGTTGTGCCTCTGCTCTAG

mRNA sequence

ATGAGTGGTGGTTTATGTTTACTGTGGAAAGATGATGTGGATGTCCAAATTCGAAATTTTTTGCGTTACCATGTGGATGCATATATTAAATGGGATAATAAAAAATGGAGATTTACGAGTCTTTATGGTCATCCTGATTCACCCAACGTCATCATACATGGAAACTTTTACGTCGTCTTTACAACTACGATGATTCTCTGTGGCTTATTGGTGGGGATCTCAATGAAATTTTGTGGAGTAATGAGAAATCAAGTGGCTCTGAGTGGGATAGTAATCAACTTTCGACTTTCAGAGAGGTTTTACACGATTGTCATTTACAGGATATGGGCTTCTCTGGAAACATTTTTACTTGGTGTAACAGAAGAGATGCGGGGGCACAATCTTCCGAATCATCTTGCTCGAGGAAAGCATCGTTCATCATTCAAGTTTGAAGAATGGTGGACACATCACGAGGAATGTAGAAGACTCATTATAAATTCTGGACTATGGGAGCCTGGTAGGGCAAATGAATGTTCTCTTGGGAGAATCTTCAATGTTGTGCCTCTGCTCTAG

Coding sequence (CDS)

ATGAGTGGTGGTTTATGTTTACTGTGGAAAGATGATGTGGATGTCCAAATTCGAAATTTTTTGCGTTACCATGTGGATGCATATATTAAATGGGATAATAAAAAATGGAGATTTACGAGTCTTTATGGTCATCCTGATTCACCCAACGTCATCATACATGGAAACTTTTACGTCGTCTTTACAACTACGATGATTCTCTGTGGCTTATTGGTGGGGATCTCAATGAAATTTTGTGGAGTAATGAGAAATCAAGTGGCTCTGAGTGGGATAGTAATCAACTTTCGACTTTCAGAGAGGTTTTACACGATTGTCATTTACAGGATATGGGCTTCTCTGGAAACATTTTTACTTGGTGTAACAGAAGAGATGCGGGGGCACAATCTTCCGAATCATCTTGCTCGAGGAAAGCATCGTTCATCATTCAAGTTTGAAGAATGGTGGACACATCACGAGGAATGTAGAAGACTCATTATAAATTCTGGACTATGGGAGCCTGGTAGGGCAAATGAATGTTCTCTTGGGAGAATCTTCAATGTTGTGCCTCTGCTCTAG

Protein sequence

MSGGLCLLWKDDVDVQIRNFLRYHVDAYIKWDNKKWRFTSLYGHPDSPNVIIHGNFYVVFTTTMILCGLLVGISMKFCGVMRNQVALSGIVINFRLSERFYTIVIYRIWASLETFLLGVTEEMRGHNLPNHLARGKHRSSFKFEEWWTHHEECRRLIINSGLWEPGRANECSLGRIFNVVPLL

Homology

[Close]

BLAST of Lag0006144 vs. NCBI nr
Match: XP_030936665.1 (uncharacterized protein LOC115961908 [Quercus lobata])

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-07
Identity = 59/212 (27.83%), Postives = 85/212 (40.09%), Query Frame = 0


Query: 2   SGGLCLLWKDDVDVQIRNFLRYHVDAYIKWDN--KKWRFTSLYGHPDS------------ 61
           SGGL +LWK+  DV++++    H+D  +   N  + WR T  YGHPDS            
Sbjct: 65  SGGLAMLWKEGCDVRLKSCSNTHIDVVVSEGNGEQPWRATGFYGHPDSGMRSISWDLLVS 124

Query: 62  ------PNVIIHGNFYVV-------------------FTTTMILCGLL----VGISMKFC 121
                    I+ G+F  +                   F   +  CGL+    VG    +C
Sbjct: 125 LKSQCQMPWIVFGDFNEILNYDEKLGWLERDARQMKGFRDCLCYCGLIDMGFVGQRFTWC 184

Query: 122 ----GVMRNQVALSGIVINFRLSERFYTIVIY-RIWASLETFLLGVTEEMRGHNLPNHLA 166
               G  R  V L  +V N      F    +Y R  A+ +  LL ++  MRG   P  + 
Sbjct: 185 NGRFGEQRTLVRLDRMVANEEWLNLFPEAKVYHRAMAASDHCLLSLSLRMRG---PKRVV 244

[Close]

BLAST of Lag0006144 vs. NCBI nr
Match: XP_021751647.1 (uncharacterized protein LOC110717303 [Chenopodium quinoa])

HSP 1 Score: 65.9 bits (159), Expect = 4.3e-07
Identity = 25/49 (51.02%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 2   SGGLCLLWKDDVDVQIRNFLRYHVDAYIKW-DNKKWRFTSLYGHPDSPN 50
           SGG+ LLWKD +DV+I++F   H+DA+++W  N +WRFT +YGH +  N
Sbjct: 70  SGGVALLWKDTLDVEIKSFSLNHIDAWVEWGSNIRWRFTGIYGHHEEEN 118

[Close]

BLAST of Lag0006144 vs. NCBI nr
Match: XP_042980077.1 (uncharacterized protein LOC122310261 [Carya illinoinensis])

HSP 1 Score: 65.9 bits (159), Expect = 4.3e-07
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 2   SGGLCLLWKDDVDVQIRNFLRYHVDAYIKWDN-KKWRFTSLYGHPDS 48
           SGGL LLW  D+ V++R+F +YH+D +IK D+   WRFT LYGHPD+
Sbjct: 65  SGGLGLLWNSDLRVELRSFSKYHIDVHIKMDDLMVWRFTGLYGHPDA 111

[Close]

BLAST of Lag0006144 vs. NCBI nr
Match: XP_017979793.1 (PREDICTED: uncharacterized protein LOC18594299 [Theobroma cacao])

HSP 1 Score: 65.5 bits (158), Expect = 5.6e-07
Identity = 36/117 (30.77%), Postives = 54/117 (46.15%), Query Frame = 0


Query: 2   SGGLCLLWKDDVDVQIRNFLRYHVDAYIKWDNKKWRFTSLYGHPDSPNVIIHGNFYVVFT 61
           SGGL ++W+   DV + ++ RYH+D  I     KWRF   YGHP +       +      
Sbjct: 22  SGGLAMVWRKTADVTVTSYSRYHIDTEIMLRGSKWRFIGFYGHPKANERHQSWSLLRQLE 81

Query: 62  TTMILCGLLVGISMKFCGVMRNQVALSGIVINFRLSERFYTIVIYRIWASLETFLLG 119
           +   L  L +G   +     + +  L+G     R  ER   IV+Y IW  L+  +LG
Sbjct: 82  SRSQLSWLCIGDFNEILFANKRKAELTGGKYKRRRFERHVLIVLYGIWVLLDQSILG 138

[Close]

BLAST of Lag0006144 vs. NCBI nr
Match: XP_042950313.1 (uncharacterized protein LOC122282426 [Carya illinoinensis])

HSP 1 Score: 65.1 bits (157), Expect = 7.3e-07
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 2   SGGLCLLWKDDVDVQIRNFLRYHVDAYIKWDN-KKWRFTSLYGHPDS 48
           SGGL LLW  D+ V++R+F +YH+D +IK D+   WRFT LYGHPD+
Sbjct: 65  SGGLGLLWNSDLGVELRSFSQYHIDVHIKIDDLMVWRFTGLYGHPDT 111

The following BLAST results are available for this feature:

BLAST of Lag0006144 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030936665.1	1.5e-07	27.83	uncharacterized protein LOC115961908 [Quercus lobata]	[more]
XP_021751647.1	4.3e-07	51.02	uncharacterized protein LOC110717303 [Chenopodium quinoa]	[more]
XP_042980077.1	4.3e-07	57.45	uncharacterized protein LOC122310261 [Carya illinoinensis]	[more]
XP_017979793.1	5.6e-07	30.77	PREDICTED: uncharacterized protein LOC18594299 [Theobroma cacao]	[more]
XP_042950313.1	7.3e-07	57.45	uncharacterized protein LOC122282426 [Carya illinoinensis]	[more]

BLAST of Lag0006144 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006144.1	Lag0006144.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0004519	endonuclease activity