Lag0006136 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006136
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr6: 38030236 .. 38030812 (+)
RNA-Seq Expression	Lag0006136
Synteny	Lag0006136

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCTAGCTGAAAATCTCGATGAAGAAGATCGTGGGAAAGCTACAAGCATCATTTGGAGTATTTGGAGTCACAGAAATTTGATAAAGAAAAATTCGGATAAGCTATATGGGAAGGAAGAAAGTACCTGAGTGCTGTCAGCAAAGAACCTTCAAGATTTAAGAGCTCCTTGAGTTAGAGTTGGTCCCCCCTCCTCGAAATTTCTGGAAAATAAATACAGATGCATCATGGTCTGAAGAAAAAAGAACTGGGAGAATCGGATGGATTGCTCGTGACTTTTTGGGATCTTTTATCTTTGCCGGTTTCAAGAGGATGAAGAGGAAATGGTCGATTCTCAGTCTGGAATTGAAAGCAATTGAAGAAAGTCTAAGGAGCTTACTTGAAGAAATTGGAAATCACCTCCCAAGGATCATCATCGAATCTAATTCAACAAACGTGACCGTCATCCTCAACCATGATTCCGAAGTCTTCTCGGGGAGCAGGTCGGTGGCGGACGATGTGGAGTATGCGGCGGAGCTGATCGGAAGCGTCGAGTTCAGCTTCAGCCGGCGGGAATCCAACATCATTGTGCATTAG

mRNA sequence

ATGAGCCTAGCTGAAAATCTCGATGAAGAAGATCGTGGGAAAGCTACAAGCATCATTTGGAGTATTTGGAGTCACAGAAATTTGATAAAGAAAAATTCGGATAAGCTATATGGGAAGGAAGAAAATGCATCATGGTCTGAAGAAAAAAGAACTGGGAGAATCGGATGGATTGCTCGTGACTTTTTGGGATCTTTTATCTTTGCCGGTTTCAAGAGGATGAAGAGGAAATGGTCGATTCTCAGTCTGGAATTGAAAGCAATTGAAGAAAGTCTAAGGAGCTTACTTGAAGAAATTGGAAATCACCTCCCAAGGATCATCATCGAATCTAATTCAACAAACGTGACCGTCATCCTCAACCATGATTCCGAAGTCTTCTCGGGGAGCAGGTCGGTGGCGGACGATGTGGAGTATGCGGCGGAGCTGATCGGAAGCGTCGAGTTCAGCTTCAGCCGGCGGGAATCCAACATCATTGTGCATTAG

Coding sequence (CDS)

ATGAGCCTAGCTGAAAATCTCGATGAAGAAGATCGTGGGAAAGCTACAAGCATCATTTGGAGTATTTGGAGTCACAGAAATTTGATAAAGAAAAATTCGGATAAGCTATATGGGAAGGAAGAAAATGCATCATGGTCTGAAGAAAAAAGAACTGGGAGAATCGGATGGATTGCTCGTGACTTTTTGGGATCTTTTATCTTTGCCGGTTTCAAGAGGATGAAGAGGAAATGGTCGATTCTCAGTCTGGAATTGAAAGCAATTGAAGAAAGTCTAAGGAGCTTACTTGAAGAAATTGGAAATCACCTCCCAAGGATCATCATCGAATCTAATTCAACAAACGTGACCGTCATCCTCAACCATGATTCCGAAGTCTTCTCGGGGAGCAGGTCGGTGGCGGACGATGTGGAGTATGCGGCGGAGCTGATCGGAAGCGTCGAGTTCAGCTTCAGCCGGCGGGAATCCAACATCATTGTGCATTAG

Protein sequence

MSLAENLDEEDRGKATSIIWSIWSHRNLIKKNSDKLYGKEENASWSEEKRTGRIGWIARDFLGSFIFAGFKRMKRKWSILSLELKAIEESLRSLLEEIGNHLPRIIIESNSTNVTVILNHDSEVFSGSRSVADDVEYAAELIGSVEFSFSRRESNIIVH

Homology

[Close]

BLAST of Lag0006136 vs. NCBI nr
Match: XP_013694754.1 (uncharacterized protein LOC106398790 [Brassica napus])

HSP 1 Score: 55.5 bits (132), Expect = 5.0e-04
Identity = 31/118 (26.27%), Postives = 61/118 (51.69%), Query Frame = 0


Query: 42  NASWSEEKRTGRIGWIARDFLGSFIFAGFKRMKRKWSILSLELKAIEESLRSLLEEIGNH 101
           +A+W +E   G +GW+ RD  G  ++AG KR+    S+   E++A+  ++R+L    G  
Sbjct: 150 DATWMQETEVGGVGWVLRDHNGDMLWAGAKRLPDMGSVHETEMEALRWAIRTL---AGFG 209

Query: 102 LPRIIIESNSTNVTVILNHDSEVFSGSRSVADDVEYAAELIGSVEFSFSRRESNIIVH 160
              +  ES+S  +  +LN++ E++   + +   +  +   +  VE ++  R  N I H
Sbjct: 210 YRNVTFESDSQVLVRMLNNEEEIWPRVKPMIQAISSSPSGMEKVEVAYYPRSGNKIAH 264

[Close]

BLAST of Lag0006136 vs. NCBI nr
Match: CAB4291403.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 55.5 bits (132), Expect = 5.0e-04
Identity = 43/133 (32.33%), Postives = 61/133 (45.86%), Query Frame = 0


Query: 28  LIKKNSDKLYGKEENASWSEEKRTGRIGWIARDFLGSFIFAGFKRMKRKWSILSLELKAI 87
           L+K NSD        A+WS ++  G +GW+ RD  G  + AG +      S L +EL AI
Sbjct: 296 LLKVNSD--------AAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSALMMELLAI 355

Query: 88  EESLRSLLEEIGN-HLPRIIIESNSTNVTVILNHDSEVFSGSRSVADDVEYAAELIGSVE 147
               R  L E  N HL  II+ES+S    ++LN  + V S    +  D+      +  V 
Sbjct: 356 ----RHALSECANFHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLSRVS 415

Query: 148 FSFSRRESNIIVH 160
           F F+    N   H
Sbjct: 416 FVFAPSSCNQATH 416

[Close]

BLAST of Lag0006136 vs. NCBI nr
Match: CAB4274760.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 55.1 bits (131), Expect = 6.5e-04
Identity = 38/119 (31.93%), Postives = 57/119 (47.90%), Query Frame = 0


Query: 42   NASWSEEKRTGRIGWIARDFLGSFIFAGFKRMKRKWSILSLELKAIEESLRSLLEEIGN- 101
            +A+WS ++  G +GW+ RD  G  + AG +      S + +EL AI    R  L E  N 
Sbjct: 1140 DAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMMELLAI----RHALSECANF 1199

Query: 102  HLPRIIIESNSTNVTVILNHDSEVFSGSRSVADDVEYAAELIGSVEFSFSRRESNIIVH 160
            HL  II+ES+S    ++LN  + V S    +  D+      +  V F F+ R  N   H
Sbjct: 1200 HLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLSRVSFVFAPRSCNQAAH 1254

[Close]

BLAST of Lag0006136 vs. NCBI nr
Match: CAB4274761.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 55.1 bits (131), Expect = 6.5e-04
Identity = 38/119 (31.93%), Postives = 57/119 (47.90%), Query Frame = 0


Query: 42  NASWSEEKRTGRIGWIARDFLGSFIFAGFKRMKRKWSILSLELKAIEESLRSLLEEIGN- 101
           +A+WS ++  G +GW+ RD  G  + AG +      S + +EL AI    R  L E  N 
Sbjct: 272 DAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMMELLAI----RHALSECANF 331

Query: 102 HLPRIIIESNSTNVTVILNHDSEVFSGSRSVADDVEYAAELIGSVEFSFSRRESNIIVH 160
           HL  II+ES+S    ++LN  + V S    +  D+      +  V F F+ R  N   H
Sbjct: 332 HLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLSRVSFVFAPRSCNQAAH 386

[Close]

BLAST of Lag0006136 vs. NCBI nr
Match: CAB4303756.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 55.1 bits (131), Expect = 6.5e-04
Identity = 38/119 (31.93%), Postives = 57/119 (47.90%), Query Frame = 0


Query: 42  NASWSEEKRTGRIGWIARDFLGSFIFAGFKRMKRKWSILSLELKAIEESLRSLLEEIGN- 101
           +A+WS ++  G +GW+ RD  G  + AG +      S + +EL AI    R  L E  N 
Sbjct: 809 DAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMMELLAI----RHALSECANF 868

Query: 102 HLPRIIIESNSTNVTVILNHDSEVFSGSRSVADDVEYAAELIGSVEFSFSRRESNIIVH 160
           HL  II+ES+S    ++LN  + V S    +  D+      +  V F F+ R  N   H
Sbjct: 869 HLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLSRVSFVFAPRSCNQAAH 923

The following BLAST results are available for this feature:

BLAST of Lag0006136 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_013694754.1	5.0e-04	26.27	uncharacterized protein LOC106398790 [Brassica napus]	[more]
CAB4291403.1	5.0e-04	32.33	unnamed protein product [Prunus armeniaca]	[more]
CAB4274760.1	6.5e-04	31.93	unnamed protein product [Prunus armeniaca]	[more]
CAB4274761.1	6.5e-04	31.93	unnamed protein product [Prunus armeniaca]	[more]
CAB4303756.1	6.5e-04	31.93	unnamed protein product [Prunus armeniaca]	[more]

BLAST of Lag0006136 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 42..158 e-value: 1.0E-8 score: 35.0
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 43..159 e-value: 2.98035E-9 score: 50.0052

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006136.1	Lag0006136.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity