Lag0006121 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006121
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr6: 37691603 .. 37692700 (+)
RNA-Seq ExpressionLag0006121
SyntenyLag0006121
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAGTCTGCCATTGGAGATCGAAATGATCTCCTTATCGTTTCAGCCAGACACAGGAGTATATTAAAATACGTTCGAAAGGTATTCCTAATGCATTCCATGGCATATGTGTATACCATTTACTACAAAACCTGAAGCAGACCTACAAAGGTGATCTCGTTGATGCATTATACTATTCAACAGCTAAGGCTTTCAATATTGTTGATTTTGAACATAACATGCAAGAGTTAGAAAGTGGAGAACCAAGTATTCGTGATAGTTTAAATAAAATAGGTTTGCAAAATGGTCTCGTGCCTTCTGTCCTTGTCGAAGATATACAATTATGACCAATAATATATCTGAAAAGTTTTAACTCCGTTGTCTTAGAAGCTAGAAAGTTTATGATAACTTCTATGTTAGAAGTGATAAGAATTCTTTTGCAGAGGTGGTTTTATGAACGAAAAAATGATGCAGACTACCAAGTTACTTATTTGACCAAATCAACAGAGTTAAAATTACGTGAGTTAATCGAGGAAGGTCGTCAATTGGAGGTATTCAGTCAACCATATACCTTATGTTGCAAAATATGATTATTTCATATTAAGTAAATATTGTGATTATTTTTTCTGTTTTCAGGTAAATCTAATTAATGACCATTTGAATTAAGTCGTTAGTGGTTCAGATCAGTTTGACATTGACCTCATGAACCAGACTTGTTCTTGTCAAATTTGGGACCAACTAGAAATTCCATGTCCGTATGCATGTGCAGTATTGTCTCGAAGCATCTATCGAAAAAGGATTATGTATCGGCCTATTATACTAATGATTTGCTACGAACAATTTATAGTGGAATTGTTCATCCAATTGGCAATGAAGCTTCTTGGGTTATTCCAGAAAATTTTTAGACCATAAAATATTTGATAGGACCAAAATAGTCTTATTTTATCACCTCTAATCTAAGTTTGTTAGGGAAATTTTATGCTATACTTGTCTTACTTACAGGTACTTTGAGCTTAGGCGATGTCGGGAGTCAACCACGCTAAATTGGTGTTAGTTTGGGCCAATTATGGAGTTTTGGAGCCATCTCGGTGTTCTTGGACGGCGAAGCAGGCCTGA

mRNA sequence

ATGTTGAAGTCTGCCATTGGAGATCGAAATGATCTCCTTATCGTTTCAGCCAGACACAGGAGTATATTAAAATACGTTCGAAAGAGGTGGTTTTATGAACGAAAAAATGATGCAGACTACCAAGTTACTTATTTGACCAAATCAACAGAGTTAAAATTACGTGAGTTAATCGAGGAAGGTCGTCAATTGGAGGCGATGTCGGGAGTCAACCACGCTAAATTGGTGTTAGTTTGGGCCAATTATGGAGTTTTGGAGCCATCTCGGTGTTCTTGGACGGCGAAGCAGGCCTGA

Coding sequence (CDS)

ATGTTGAAGTCTGCCATTGGAGATCGAAATGATCTCCTTATCGTTTCAGCCAGACACAGGAGTATATTAAAATACGTTCGAAAGAGGTGGTTTTATGAACGAAAAAATGATGCAGACTACCAAGTTACTTATTTGACCAAATCAACAGAGTTAAAATTACGTGAGTTAATCGAGGAAGGTCGTCAATTGGAGGCGATGTCGGGAGTCAACCACGCTAAATTGGTGTTAGTTTGGGCCAATTATGGAGTTTTGGAGCCATCTCGGTGTTCTTGGACGGCGAAGCAGGCCTGA

Protein sequence

MLKSAIGDRNDLLIVSARHRSILKYVRKRWFYERKNDADYQVTYLTKSTELKLRELIEEGRQLEAMSGVNHAKLVLVWANYGVLEPSRCSWTAKQA
Homology
[Close]
BLAST of Lag0006121 vs. NCBI nr
Match: XP_008447297.1 (PREDICTED: uncharacterized protein LOC103489767 [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 5.5e-06
Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 0 

Query: 2   LKSAIGDRNDLLIVSARHRSILKYVR-----------------KRWFYERKNDADYQVTY 61
           LK  IG RN+++IVS RH+SI K ++                 +RWF+ER+N+ DYQVT 
Sbjct: 219 LKRIIGGRNEVVIVSDRHKSICKAIKAKELLICSMLEVLRMMLQRWFFERRNEVDYQVTD 278

Query: 62  LTKSTELKLRELIEEGRQLEAMSGVNHAKLVLV 78
            TK+ E  L+E IE  R L  ++ VN+ K  ++
Sbjct: 279 FTKTIEGILKEHIEHSR-LMKVNPVNNMKYKVI 310

[Close]
BLAST of Lag0006121 vs. NCBI nr
Match: XP_022134813.1 (uncharacterized protein LOC111006994 [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 8.0e-05
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 2   LKSAIGDRNDLLIVSARHRSILKYVRKRWFYERKNDADYQVTYLTKSTELKLRELIEEGR 61
           L +A+ D  +L I S     +++ + +RWFYERKN AD+Q+T  TKS E KLRE I +GR
Sbjct: 476 LNAAMKDARELPITSM--LEVVRMMLQRWFYERKNHADFQITEFTKSVEKKLREQISDGR 535

Query: 62  QL 64
            +
Sbjct: 536 TM 535

The following BLAST results are available for this feature:
BLAST of Lag0006121 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008447297.15.5e-0639.78PREDICTED: uncharacterized protein LOC103489767 [Cucumis melo][more]
XP_022134813.18.0e-0546.77uncharacterized protein LOC111006994 [Momordica charantia][more]
BLAST of Lag0006121 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006121.1Lag0006121.1mRNA