Lag0006108 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006108
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionzf-RVT domain-containing protein
Locationchr6: 37427408 .. 37427716 (+)
RNA-Seq ExpressionLag0006108
SyntenyLag0006108
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGTGCCCAATAAGATGAAAGTTTTTGTTTGGAGATCCTATCACAATTCCATTCCAACTATGGACAATCTTCGACATCACCATGTTCCGGTTGAGGGATTCTGCCCAGTCTGTAAGGAGGAGACGGAGACCTCTGACCATGCACTGTTTCAATGCCAGAGAGCTCAGGAGATATGGGATCTTCTTTCGCCGTCACTGAAAGAAGGTCTGGCTGATCACATCGATATTAAGGATCATTGGTTGCGTATAGCGGATGATTCAAGGTTGAGTCTTGAACGTATTTGTGTGGGGGCTTGGGCTATTTGA

mRNA sequence

ATGTGGGTGCCCAATAAGATGAAAGTTTTTGTTTGGAGATCCTATCACAATTCCATTCCAACTATGGACAATCTTCGACATCACCATGTTCCGGTTGAGGGATTCTGCCCAGTCTGTAAGGAGGAGACGGAGACCTCTGACCATGCACTGTTTCAATGCCAGAGAGCTCAGGAGATATGGGATCTTCTTTCGCCGTCACTGAAAGAAGGTCTGGCTGATCACATCGATATTAAGGATCATTGGTTGCGTATAGCGGATGATTCAAGGTTGAGTCTTGAACGTATTTGTGTGGGGGCTTGGGCTATTTGA

Coding sequence (CDS)

ATGTGGGTGCCCAATAAGATGAAAGTTTTTGTTTGGAGATCCTATCACAATTCCATTCCAACTATGGACAATCTTCGACATCACCATGTTCCGGTTGAGGGATTCTGCCCAGTCTGTAAGGAGGAGACGGAGACCTCTGACCATGCACTGTTTCAATGCCAGAGAGCTCAGGAGATATGGGATCTTCTTTCGCCGTCACTGAAAGAAGGTCTGGCTGATCACATCGATATTAAGGATCATTGGTTGCGTATAGCGGATGATTCAAGGTTGAGTCTTGAACGTATTTGTGTGGGGGCTTGGGCTATTTGA

Protein sequence

MWVPNKMKVFVWRSYHNSIPTMDNLRHHHVPVEGFCPVCKEETETSDHALFQCQRAQEIWDLLSPSLKEGLADHIDIKDHWLRIADDSRLSLERICVGAWAI
Homology
[Close]
BLAST of Lag0006108 vs. NCBI nr
Match: KAF4378452.1 (hypothetical protein F8388_021646 [Cannabis sativa])

HSP 1 Score: 82.8 bits (203), Expect = 1.9e-12
Identity = 35/101 (34.65%), Postives = 58/101 (57.43%), Query Frame = 0 

Query: 3   VPNKMKVFVWRSYHNSIPTMDNLRHHHVPVEGFCPVCKEETETSDHALFQCQRAQEIWDL 62
           +P+K+++FVW+ +HN +P    L   H+    +CP+CK + ET  HALF C RA+E+W +
Sbjct: 575 LPSKLRIFVWKVFHNILPVASELNRRHIAASPYCPLCKLQQETIPHALFLCSRAKEVWRI 634

Query: 63  LSPSLKEGLADHIDIKDHWLRIAD-DSRLSLERICVGAWAI 103
            S +L   LA     ++  L +++  S L  E+     W+I
Sbjct: 635 SSLNLNFKLAASSSAEEFLLYVSEHTSTLEFEQFLTLCWSI 675

[Close]
BLAST of Lag0006108 vs. NCBI nr
Match: KAF4361328.1 (hypothetical protein G4B88_015920 [Cannabis sativa])

HSP 1 Score: 81.3 bits (199), Expect = 5.5e-12
Identity = 36/101 (35.64%), Postives = 58/101 (57.43%), Query Frame = 0 

Query: 3   VPNKMKVFVWRSYHNSIPTMDNLRHHHVPVEGFCPVCKEETETSDHALFQCQRAQEIWDL 62
           +P+K+++FVW+ +HN+IP    L   H+    +CP+CK++ ET  HALF C RA+E+W L
Sbjct: 315 LPSKLRIFVWKVFHNAIPVAAELHRKHIANTPYCPLCKQQQETIPHALFLCTRAKEVWRL 374

Query: 63  LSPSLKEGLADHIDIKDHWLRIADDSRLS-LERICVGAWAI 103
            S  L   LA     ++     +D++  S  E+     W+I
Sbjct: 375 SSIKLNFKLAATSSAEEFLFYASDNTSTSDFEQFLTICWSI 415

[Close]
BLAST of Lag0006108 vs. NCBI nr
Match: KAF4368669.1 (hypothetical protein F8388_003370 [Cannabis sativa])

HSP 1 Score: 81.3 bits (199), Expect = 5.5e-12
Identity = 36/101 (35.64%), Postives = 58/101 (57.43%), Query Frame = 0 

Query: 3   VPNKMKVFVWRSYHNSIPTMDNLRHHHVPVEGFCPVCKEETETSDHALFQCQRAQEIWDL 62
           +P+K+++FVW+ +HN+IP    L   H+    +CP+CK++ ET  HALF C RA+E+W L
Sbjct: 315 LPSKLRIFVWKVFHNAIPVAAELHRKHIANTPYCPLCKQQQETIPHALFLCTRAKEVWRL 374

Query: 63  LSPSLKEGLADHIDIKDHWLRIADDSRLS-LERICVGAWAI 103
            S  L   LA     ++     +D++  S  E+     W+I
Sbjct: 375 SSIKLNFKLAATSSAEEFLFYASDNTSTSDFEQFLTICWSI 415

[Close]
BLAST of Lag0006108 vs. NCBI nr
Match: XP_030508858.1 (uncharacterized protein LOC115723499 [Cannabis sativa])

HSP 1 Score: 81.3 bits (199), Expect = 5.5e-12
Identity = 36/101 (35.64%), Postives = 58/101 (57.43%), Query Frame = 0 

Query: 3   VPNKMKVFVWRSYHNSIPTMDNLRHHHVPVEGFCPVCKEETETSDHALFQCQRAQEIWDL 62
           +P+K+++FVW+ +HN+IP    L   H+    +CP+CK++ ET  HALF C RA+E+W L
Sbjct: 788 LPSKLRIFVWKVFHNAIPVAAELHRKHIANTPYCPLCKQQQETIPHALFLCTRAKEVWRL 847

Query: 63  LSPSLKEGLADHIDIKDHWLRIADDSRLS-LERICVGAWAI 103
            S  L   LA     ++     +D++  S  E+     W+I
Sbjct: 848 SSIKLNFKLAATSSAEEFLFYASDNTSTSDFEQFLTICWSI 888

[Close]
BLAST of Lag0006108 vs. NCBI nr
Match: XP_030498122.1 (uncharacterized protein LOC115713779 [Cannabis sativa])

HSP 1 Score: 80.9 bits (198), Expect = 7.1e-12
Identity = 34/101 (33.66%), Postives = 57/101 (56.44%), Query Frame = 0 

Query: 3    VPNKMKVFVWRSYHNSIPTMDNLRHHHVPVEGFCPVCKEETETSDHALFQCQRAQEIWDL 62
            +P+K+++FVW+ +HN +P    L   H+    +CP+CK + ET  HALF C RA+E+W +
Sbjct: 1060 LPSKLRIFVWKVFHNVLPVASELNRRHIAASPYCPLCKLQQETIPHALFLCSRAKEVWKI 1119

Query: 63   LSPSLKEGLADHIDIKDHWLRIA-DDSRLSLERICVGAWAI 103
             + +L   LA     ++  L ++   S L  E+     W+I
Sbjct: 1120 SNLNLNFKLAASSSAEEFLLYVSGHTSTLEFEQFLTLCWSI 1160

The following BLAST results are available for this feature:
BLAST of Lag0006108 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF4378452.11.9e-1234.65hypothetical protein F8388_021646 [Cannabis sativa][more]
KAF4361328.15.5e-1235.64hypothetical protein G4B88_015920 [Cannabis sativa][more]
KAF4368669.15.5e-1235.64hypothetical protein F8388_003370 [Cannabis sativa][more]
XP_030508858.15.5e-1235.64uncharacterized protein LOC115723499 [Cannabis sativa][more]
XP_030498122.17.1e-1233.66uncharacterized protein LOC115713779 [Cannabis sativa][more]
BLAST of Lag0006108 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 2..60
e-value: 5.4E-17
score: 62.3

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006108.1Lag0006108.1mRNA