Lag0006093 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006093
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Description5'-nucleotidase
Locationchr6: 37193657 .. 37193974 (-)
RNA-Seq ExpressionLag0006093
SyntenyLag0006093
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCACCTCACCTCGGACTCCATTTTCCCCACGATTGAAATTCCCTTACCCTTCGATACTGCCCCAAGCCCCAGTCTCTCCACTCTTGACCCTCTCATACCCTCTAAAGGTCCCACTCTCCCCACTATCGACCCTCATCTACCCTCTACCAACCCCACTCTCTCCAGTCTTGACCCTCGCCTACCCTCTATAGACCTCACTATCCCCACTCTCGACCCTAGCGTACCCTCTACAGGCCCCACTCCCCCCTTGACGACCCTGCCAGAGTATCAAAGGTGTCTCACGTGCCTTCTCATACCCATTGCCCAAGCTTAA

mRNA sequence

ATGACTCACCTCACCTCGGACTCCATTTTCCCCACGATTGAAATTCCCTTACCCTTCGATACTGCCCCAAGCCCCAGTCTCTCCACTCTTGACCCTCTCATACCCTCTAAAGGTCCCACTCTCCCCACTATCGACCCTCATCTACCCTCTACCAACCCCACTCTCTCCAGTCTTGACCCTCGCCTACCCTCTATAGACCTCACTATCCCCACTCTCGACCCTAGCGTACCCTCTACAGGCCCCACTCCCCCCTTGACGACCCTGCCAGAGTATCAAAGGTGTCTCACGTGCCTTCTCATACCCATTGCCCAAGCTTAA

Coding sequence (CDS)

ATGACTCACCTCACCTCGGACTCCATTTTCCCCACGATTGAAATTCCCTTACCCTTCGATACTGCCCCAAGCCCCAGTCTCTCCACTCTTGACCCTCTCATACCCTCTAAAGGTCCCACTCTCCCCACTATCGACCCTCATCTACCCTCTACCAACCCCACTCTCTCCAGTCTTGACCCTCGCCTACCCTCTATAGACCTCACTATCCCCACTCTCGACCCTAGCGTACCCTCTACAGGCCCCACTCCCCCCTTGACGACCCTGCCAGAGTATCAAAGGTGTCTCACGTGCCTTCTCATACCCATTGCCCAAGCTTAA

Protein sequence

MTHLTSDSIFPTIEIPLPFDTAPSPSLSTLDPLIPSKGPTLPTIDPHLPSTNPTLSSLDPRLPSIDLTIPTLDPSVPSTGPTPPLTTLPEYQRCLTCLLIPIAQA
Homology
BLAST of Lag0006093 vs. NCBI nr
Match: XP_041710685.1 (MAX gene-associated protein-like isoform X1 [Coregonus clupeaformis] >XP_041710686.1 MAX gene-associated protein-like isoform X1 [Coregonus clupeaformis] >XP_041710687.1 MAX gene-associated protein-like isoform X1 [Coregonus clupeaformis])

HSP 1 Score: 64.3 bits (155), Expect = 7.1e-07
Identity = 30/68 (44.12%), Postives = 46/68 (67.65%), Query Frame = 0

Query: 17  LPFDTAPSPSLSTLDPLIPSKGPTLPTIDPHLPSTNPTLSSLDPRLPSIDLTIPTLDPSV 76
           LP  ++PS ++ T DP+IP+  P +P  DP +P+T+P + + DP +P+ DL IP  DP +
Sbjct: 744 LPPSSSPSSAVPTTDPVIPATDPVIPATDPVIPATDPVIPATDPVIPATDLVIPATDPVI 803

Query: 77  PSTGPTPP 85
           P+T PT P
Sbjct: 804 PATDPTGP 811

BLAST of Lag0006093 vs. NCBI nr
Match: XP_041710688.1 (MAX gene-associated protein-like isoform X2 [Coregonus clupeaformis])

HSP 1 Score: 64.3 bits (155), Expect = 7.1e-07
Identity = 30/68 (44.12%), Postives = 46/68 (67.65%), Query Frame = 0

Query: 17  LPFDTAPSPSLSTLDPLIPSKGPTLPTIDPHLPSTNPTLSSLDPRLPSIDLTIPTLDPSV 76
           LP  ++PS ++ T DP+IP+  P +P  DP +P+T+P + + DP +P+ DL IP  DP +
Sbjct: 744 LPPSSSPSSAVPTTDPVIPATDPVIPATDPVIPATDPVIPATDPVIPATDLVIPATDPVI 803

Query: 77  PSTGPTPP 85
           P+T PT P
Sbjct: 804 PATDPTGP 811

BLAST of Lag0006093 vs. NCBI nr
Match: XP_041710689.1 (MAX gene-associated protein-like isoform X3 [Coregonus clupeaformis])

HSP 1 Score: 64.3 bits (155), Expect = 7.1e-07
Identity = 30/68 (44.12%), Postives = 46/68 (67.65%), Query Frame = 0

Query: 17  LPFDTAPSPSLSTLDPLIPSKGPTLPTIDPHLPSTNPTLSSLDPRLPSIDLTIPTLDPSV 76
           LP  ++PS ++ T DP+IP+  P +P  DP +P+T+P + + DP +P+ DL IP  DP +
Sbjct: 744 LPPSSSPSSAVPTTDPVIPATDPVIPATDPVIPATDPVIPATDPVIPATDLVIPATDPVI 803

Query: 77  PSTGPTPP 85
           P+T PT P
Sbjct: 804 PATDPTGP 811

BLAST of Lag0006093 vs. NCBI nr
Match: WP_196073264.1 (hypothetical protein [Nakamurella sp. YIM 132087])

HSP 1 Score: 62.0 bits (149), Expect = 3.5e-06
Identity = 33/80 (41.25%), Postives = 48/80 (60.00%), Query Frame = 0

Query: 5   TSDSIFPTIEIPLPFDTAPSPSLSTLDPLIPSKGPTLPTIDPHLPSTNPTLSSLDPRLPS 64
           TS+   PT E  +P      P++ T +P  P+  PT+PT DP  P+T PT+ + +P  P+
Sbjct: 294 TSEPTVPTTEPSVPTTEPSEPTVPTTEPSEPTTDPTVPTTDPTTPTTEPTVPTTEPTDPT 353

Query: 65  IDLTIPTLDPSVPSTGPTPP 85
            D T PT +P+VP+T PT P
Sbjct: 354 TDPTTPTTEPTVPTTDPTEP 373

BLAST of Lag0006093 vs. NCBI nr
Match: XP_018025688.1 (PREDICTED: uncharacterized protein LOC108681194 [Hyalella azteca])

HSP 1 Score: 62.0 bits (149), Expect = 3.5e-06
Identity = 37/85 (43.53%), Postives = 49/85 (57.65%), Query Frame = 0

Query: 5    TSDSIFPTIEIPLPFDTAPSPSLSTLDPLIPSKGPTLPTIDPHLPSTNPTLSSLDPRLPS 64
            T  S  PT+    P   + +P+L +  P +PS  PTLP+  P LPST PTL S  P LPS
Sbjct: 1716 TLPSAAPTLPSAAPTLPSTAPTLPSTAPTLPSTAPTLPSASPTLPSTTPTLHSASPTLPS 1775

Query: 65   IDLTIPTLDPSVPSTGPTPPLTTLP 90
               T+P++ P++PST  T PL   P
Sbjct: 1776 TTPTLPSVSPTLPSTATTLPLVAPP 1800

BLAST of Lag0006093 vs. ExPASy Swiss-Prot
Match: Q9Y493 (Zonadhesin OS=Homo sapiens OX=9606 GN=ZAN PE=2 SV=5)

HSP 1 Score: 46.6 bits (109), Expect = 2.0e-04
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 0

Query: 11  PTIEIPLPFDTAPSPSLSTLDPLIPSKGPTLPTIDPHLPSTNPTLSSLDPRLPSIDLTIP 70
           PTI    P      P++S     IP++ PT+PT  P +P+  PT+S+ +P  P+ + TI 
Sbjct: 752 PTISPEKPTTPTEKPTISPEKLTIPTEKPTIPTEKPTIPTEKPTISTEEPTTPTEETTIS 811

Query: 71  TLDPSVPSTGPTPP 85
           T  PS+P   PT P
Sbjct: 812 TEKPSIPMEKPTLP 825

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_041710685.17.1e-0744.12MAX gene-associated protein-like isoform X1 [Coregonus clupeaformis] >XP_0417106... [more]
XP_041710688.17.1e-0744.12MAX gene-associated protein-like isoform X2 [Coregonus clupeaformis][more]
XP_041710689.17.1e-0744.12MAX gene-associated protein-like isoform X3 [Coregonus clupeaformis][more]
WP_196073264.13.5e-0641.25hypothetical protein [Nakamurella sp. YIM 132087][more]
XP_018025688.13.5e-0643.53PREDICTED: uncharacterized protein LOC108681194 [Hyalella azteca][more]
Match NameE-valueIdentityDescription
Q9Y4932.0e-0437.84Zonadhesin OS=Homo sapiens OX=9606 GN=ZAN PE=2 SV=5[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006093.1Lag0006093.1mRNA