Lag0006076 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006076
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr6: 36973445 .. 36974069 (+)
RNA-Seq ExpressionLag0006076
SyntenyLag0006076
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTCAATCGGCAGAGCCTGGAGTCCAGGCCCGTCGAGAGCCATGAAAATATCAATTGGAATGCTCGGGAAGCGGGGAATCCTCGAACATTTCGTGCACTAAAGGAGTTGGTGCAAGAAAAGAATCCTAATGTTGTGTTTTTATTGGAACCAAAGCAAATCATAGGCGTATGCAAACTCTTAAAATGCCGTTTTCTTTTCATAATGTTTTGTTGTGGATTGTATTGGTCTAAGCGGTGGCTTGGCCTTATTTTGGAAGTATTCTGTTAATTTAAATATTGTTTCATATTCCAAAGTTCATATTGATACTGTTATTGAGTGTCAGGACAAAAGTTTTAAATTTACAGGTTTGTATGGTGAACCCTAAATTAAGAACCGTCATTTAACTTGGACGTTACTTTGATGCATAAATGACTGCCCCCACCAGGCTTGGATGGTCGCAGGTGATTTGAATGCAATTACCAAAGAAAGCAAAAAAGATGGAGGAAGGGTGTTTAATTTCTCTCAAAGTCGGGATTTTGTGAATGCACTAAATGATTGTGCTTTAAAGGATCTTGGTTACACAGGCAATCGGTTCACCTGGATGAACAAGCAACCGGGGGTTGCATTCATTCGAAAATGA

mRNA sequence

ATGGGATTCAATCGGCAGAGCCTGGAGTCCAGGCCCGTCGAGAGCCATGAAAATATCAATTGGAATGCTCGGGAAGCGGGGAATCCTCGAACATTTCGTGCACTAAAGGAGTTGGTGCAAGAAAAGAATCCTAATGTTGTGTTTTTATTGGAACCAAAGCAAATCATAGGCGCTTGGATGGTCGCAGGTGATTTGAATGCAATTACCAAAGAAAGCAAAAAAGATGGAGGAAGGGTGTTTAATTTCTCTCAAAGTCGGGATTTTGTGAATGCACTAAATGATTGTGCTTTAAAGGATCTTGGTTACACAGGCAATCGGTTCACCTGGATGAACAAGCAACCGGGGGTTGCATTCATTCGAAAATGA

Coding sequence (CDS)

ATGGGATTCAATCGGCAGAGCCTGGAGTCCAGGCCCGTCGAGAGCCATGAAAATATCAATTGGAATGCTCGGGAAGCGGGGAATCCTCGAACATTTCGTGCACTAAAGGAGTTGGTGCAAGAAAAGAATCCTAATGTTGTGTTTTTATTGGAACCAAAGCAAATCATAGGCGCTTGGATGGTCGCAGGTGATTTGAATGCAATTACCAAAGAAAGCAAAAAAGATGGAGGAAGGGTGTTTAATTTCTCTCAAAGTCGGGATTTTGTGAATGCACTAAATGATTGTGCTTTAAAGGATCTTGGTTACACAGGCAATCGGTTCACCTGGATGAACAAGCAACCGGGGGTTGCATTCATTCGAAAATGA

Protein sequence

MGFNRQSLESRPVESHENINWNAREAGNPRTFRALKELVQEKNPNVVFLLEPKQIIGAWMVAGDLNAITKESKKDGGRVFNFSQSRDFVNALNDCALKDLGYTGNRFTWMNKQPGVAFIRK
Homology
BLAST of Lag0006076 vs. NCBI nr
Match: XP_030495196.1 (uncharacterized protein LOC115710989 [Cannabis sativa])

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-11
Identity = 43/120 (35.83%), Postives = 64/120 (53.33%), Query Frame = 0

Query: 19  INWNAREAGNPRTFRALKELVQEKNPNVVFLLEPK-----------------QIIGAWMV 78
           ++WNA   GNP+ FR LK LV++++P V+FL+E +                  +     +
Sbjct: 4   LSWNAWGLGNPKAFRHLKLLVRQQSPQVLFLMETRLGSNAISRFRQSLQFKNGLESPRFL 63

Query: 79  AGDLNAITKESKKDGGRVFNFSQSRDFVNALNDCALKDLGYTGNRFTWMNKQPGVAFIRK 122
            GD N I  +S K GG + N SQ   F N L+ C L+DL Y G+RFTW+  +  V  I++
Sbjct: 64  IGDFNEILSQSDKLGGSLRNESQIEAFRNTLDHCHLQDLPYEGDRFTWVKNRKAVTTIKE 123

BLAST of Lag0006076 vs. NCBI nr
Match: OMO99000.1 (reverse transcriptase [Corchorus capsularis])

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-11
Identity = 45/131 (34.35%), Postives = 64/131 (48.85%), Query Frame = 0

Query: 12  PVESHENINWNAREAGNPRTFRALKELVQEKNPNVVFLLEPKQI---------------- 71
           P  +   ++WN R  GNPR  RAL+ L++++ PNV+FL+E K                  
Sbjct: 387 PPRAMIGVSWNCRGLGNPRAVRALRALIRKERPNVLFLMETKLPEHKLDSIRRRCGFIAC 446

Query: 72  --IGA---------------WMVAGDLNAITKESKKDGGRVFNFSQSRDFVNALNDCALK 110
             +GA               W   GD N I  + +KDGGR+    Q  DF +AL DC L+
Sbjct: 447 FGVGAIGRSGGQLATHAEKTWFCFGDFNEILWQEEKDGGRLRPERQLVDFRDALQDCELQ 506

BLAST of Lag0006076 vs. NCBI nr
Match: XP_031375777.1 (uncharacterized protein LOC116190250 [Punica granatum])

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-10
Identity = 40/102 (39.22%), Postives = 51/102 (50.00%), Query Frame = 0

Query: 21  WNAREAGNPRTFRALKELVQEKNPNVVFLLE---PKQIIGAWMVAGDLNAITKESKKDGG 80
           WN REAGN    R+LK+LV   NP++V L E              GD N +     K GG
Sbjct: 4   WNCREAGNANFRRSLKDLVNTHNPDIVILTETLLSGDRATQAATVGDFNEVASSIDKIGG 63

Query: 81  RVFNFSQSRDFVNALNDCALKDLGYTGNRFTWMNKQPGVAFI 120
           R  N ++   F   L+ C+L DLGYTG R TW N    ++ I
Sbjct: 64  RAVNVNRMSTFNTMLDTCSLTDLGYTGPRHTWTNLHSSLSLI 105

BLAST of Lag0006076 vs. NCBI nr
Match: XP_021855317.1 (uncharacterized protein LOC110794658 [Spinacia oleracea])

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-10
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 0

Query: 58  AWMVAGDLNAITKESKKDGGRVFNFSQSRDFVNALNDCALKDLGYTGNRFTWMNKQPGVA 117
           +W++ GDLN +T +S+K GGR F  SQ RDF N  ++  L DLGY+GN FTW N + GV 
Sbjct: 210 SWLMVGDLNEVTSQSEKSGGRNFRPSQCRDFTNFTDEAGLVDLGYSGNPFTWDNMRDGVV 269

Query: 118 FIRK 122
            I++
Sbjct: 270 CIKE 273

BLAST of Lag0006076 vs. NCBI nr
Match: XP_040996249.1 (uncharacterized protein LOC121242444 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 74.7 bits (182), Expect = 6.1e-10
Identity = 46/163 (28.22%), Postives = 64/163 (39.26%), Query Frame = 0

Query: 19  INWNAREAGNPRTFRALKELVQEKNPNVVFLLE--------------------------- 78
           ++WN R  GNPRT R L  LV+ K P+ VFL+E                           
Sbjct: 4   LSWNCRGLGNPRTVRELHFLVKNKAPSFVFLMETKCKRSKVEKIKRLLNMENSFVVDCKG 63

Query: 79  ---------------------------------PKQIIGAWMVAGDLNAITKESKKDGGR 122
                                            P+  +G W+  GD N I   ++K GG 
Sbjct: 64  LSGGLAFLWKEDVDAVLVSYTMKGSWQLLRKLKPENDVG-WLCVGDFNEIISTNEKVGGP 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030495196.11.4e-1135.83uncharacterized protein LOC115710989 [Cannabis sativa][more]
OMO99000.14.2e-1134.35reverse transcriptase [Corchorus capsularis][more]
XP_031375777.11.6e-1039.22uncharacterized protein LOC116190250 [Punica granatum][more]
XP_021855317.12.1e-1050.00uncharacterized protein LOC110794658 [Spinacia oleracea][more]
XP_040996249.16.1e-1028.22uncharacterized protein LOC121242444 [Juglans microcarpa x Juglans regia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 58..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006076.1Lag0006076.1mRNA