Lag0006051 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006051
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr6: 36662992 .. 36665967 (-)
RNA-Seq ExpressionLag0006051
SyntenyLag0006051
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTAGAAGGTTTTTCGGCTTTGATAAATTTAGCACTTCAGCCACAATCTTTACAAGGACTTGCAGTTGCTCGGTTTGCCCCCAAAATTTTACATATCTTTTTTGCAAATGATAGTCTGATATTTCTAAAGGCTACAACTTTTGAATTTGGCATTTCCAAAGGTTTATTGCAAGATTATGAAACGACTTCGGATCAATGTGTGAATTTCCAAAAATCTGTTTTGTACTTCTCACCTTTAATTCCTTCAGACACACAAGAATATTTAAACAATATCTTACATATGAAGGTCGGGGAAAATTTGGGGAAGTATCTTGGTCTACCAACAATGTTTTCCTGTAGTAAAATCAATGATTATCAATACATTGTAGATCGAGTTTGGAAGAAACTACAGGGTTGGAAGGAAAAGTTTTCTCTGGATGTGGAAAGGAGATTCTTATCAAAAGTGTTGTCCAAGCCATCCCAACATATGCTATGGGATGTTTCCATTTGCCGAAGAGCCTTGTCTTAAAAATATCTTCCCTTTGTGCAAAATTTTGGTGGGGGAGTAGTGAGGAACGTTGGAGAATTCATTGGATGCGGTGGGAGAAGCTTTGCCAACCAAAAGAGTTAGGTGGCCTAAACTTCCGTGATATTGAGGGGTTCAATCAGGTCATGTTGGCAAAAACAAGTATGGGGAATTTTTAACAACCCACAATCTCTAATTGCTAAAGTTCTTAAGTCAAAATATTTCCCATCTACAGCGGTCCTTCAGGCACAAAGTTAGAGATGGTCATCATATTTTTGGAAAGGATTTGTTTGGAGTTTAGATTTGTTGAAAAAAAATGATTGAGAAAACATATCGAAAATGGAAGTTCTATATACATGTTCCGTGATCCGTGGATTCCACGACCCATGTCTTTTAGGGGATGTTTGGGGGAAAGGTTTGGGTTTTGGAAGTAGGGGTTTTGGAAATAGGGCGATTTAGGAAATCTAGAGGGTTTGGGAAATCTGTGTTTGGGGAGCTGATTTTTGAAATCTGATTTTGGAAGTCTGTGTTTGGAGTGCTGATTTCTAAAGTCTGAGTTGGGAAGTCTGTGTTTGGGGTGCTGATTTCTGAAATCTGATTTAGGAAGTCTGTGTTTTGGGTGCTGATTTAGGAAATTTGAGTTTCTGTTTTTTATAATTTTTTTTCCAATTGTTGTAAAATTTAGAAAATTTGAGCAAATTAATATTTTAACAATTGTTGTAAAATTAAAATTAATATTTTCTTCCCATTAATTGTAGATTTGGGATTTTAACTCAAAATTTTGAGCAAATTATAAAAGAATATTAAACTGAAATTAAAAAAAAAACATTTTCCATTCTTGAATTCACACACGCACGCGCACGCGCGCACGCGCACGCGCGCAATGAAGACAGTAGATAAGTGGACCAAAGTATTAAACAAGTAAGGCACCTGATGTTTGTGTTGAAAAAGAGATTAGTAAATGAGAGAATATGAAATATGATCGAATAAAAGACATTCCACAATGAGTTGCATAAAATTTAGTCATTTCATATTACATAAGTTACGGCACAAAAATCTTACATTGATCATCATATGTGTCTATAAGTTTCGGTTCAACCCTCTACAAAAAATTGAGAAGGGGTTGACAATTTTGCATGAAACAAAAAATTATGATACGTCATTCAAAAGTTTACTTTCTTCATAATTACAGAAGGTAAGTGATATTGGAAGAAAGACTGGAAGGCAATCACCTGCATTCGTTCAAAAGTCCTCGGAGGAATCAGAGCCTTGAGGGTCGGGGAAAGAGAAAGCGAAGAACAAAGCAAAGCATATGGATTCAGTTCGGTATTTAGAATGAAAAGCATCTTCAGCATCCAAAAGATAATAGAAACCACATTATGGGCATCAGAGACATGAAAAATCATGAAAAAAAAAATTGACATAACAAGTAACAAACAAAAAAAAAAAAATCCAAGGAATAAATGTTACAACATAGAACAACGTAAAAAATATTTGATAGAATAGCAAATTAACAAACAAACGATGGACATAATAAATAATTTAAGAAGAAAGAAAATATACTCCAAGGAACAACTGTTACAACCCAGGAAAAAAATAGAGGAATAACTCAATTGAACACAAGTTCAACAGAAACGAAATTGGGAGGGGGTAGTACATAATACAAAGCTAATCAAATTATAACAAATGTTCAGAACAACTTAAAAAAAAAAATTGATGGGGGGACCATGCATAGGCAAAACCAGAAAGCTTTCCATGATTGTGTTCCAACGCTTGTGAATTTACAGCATCACCATGTGGACACCGCTATCATTTGTCCAATCTGTGGTAAACATCCTAAATCAACTGATCATGTCTTATTCAGATGCTCCCGAGCCAAGCAGGTTTGACGACTATTGGATCTCAAAATCACCATCCAGGACTATCATTTCCTCTCTGTTCAAGATAGACTGCTAGAGTTATGTGAGTTAGACCAAGGTAATAGTTTGGAATGGATTTGTGTTGGGGCGTGAGCTATTTGGAATGATAGAAATAGTGTTTTACATGGAAAGCCAATTCCAGATACTCATGTGAGATGCAAATGGATTGCAGAATACTTACGGGAGTACCAAGTTCAGAATGGGTTAATGTTGAAACTGATGACTCGCAATATACAACCTTTCAATATTGGTCCTACATCTAATATGTTGGTAATTCACGTGGATGCAACTTGGGATGAAAGACGGAAGGTTTCGGATTTTGGAGTGGTAATTCGAAATTATGAAGGGGAGGTAATTGTTGCTCTGAAAGGAAATTGCCCTTTTTTGATTACTTCAAGTTGTGCAGAGGCGAGAGCAATATTAGAGAGACTTCGACTTGCAGAAAATATGGGAGCTCAACAGATTAAGATTTTTTCTGACTGCCTAACTGTAGTGTCAATGATACAAGGGACGGAGATAAGAGCAATGGAAGTGTCTTCTTTGTTGTGA

mRNA sequence

ATGTTTAGAAGATCGAGTTTGGAAGAAACTACAGGGTTGGAAGGAAAAGTTTTCTCTGGATGTGGAAAGGAGATTCTTATCAAAAGTGTTGTCCAAGCCATCCCAACATATGCTATGGGATGTTTCCATTTGCCGAAGAGCCTTGTCTTAAAAATATCTTCCCTTTGTGCAAAATTTTGGTGGGGGAGTAGTGAGGAACGTTGGAGAATTCATTGGATGCGGTGGGAGAAGCTTTGCCAACCAAAAGAGTTAGGTGGCCTAAACTTCCGTGATATTGAGGGGTTCAATCAGGTCATGTTGGCAAAAACAAACTGGAAGGCAATCACCTGCATTCGTTCAAAAGTCCTCGGAGGAATCAGAGCCTTGAGGGTCGGGGAAAGAGAAAGCGAAGAACAAAGCAAAGCATATGGATTCAGTTCGCATCACCATGTGGACACCGCTATCATTTGTCCAATCTGTGGTAAACATCCTAAATCAACTGATCATGTCTTATTCAGATGCTCCCGAGCCAAGCAGCCAATTCCAGATACTCATGTGAGATGCAAATGGATTGCAGAATACTTACGGGAGTACCAAGTTCAGAATGGGTTAATGTTGAAACTGATGACTCGCAATATACAACCTTTCAATATTGGTCCTACATCTAATATGTTGGTAATTCACGTGGATGCAACTTGGGATGAAAGACGGAAGGTTTCGGATTTTGGAGTGGTAATTCGAAATTATGAAGGGGAGGTAATTGTTGCTCTGAAAGGAAATTGCCCTTTTTTGATTACTTCAAGTTGTGCAGAGGCGAGAGCAATATTAGAGAGACTTCGACTTGCAGAAAATATGGGAGCTCAACAGATTAAGATTTTTTCTGACTGCCTAACTGTAGTGTCAATGATACAAGGGACGGAGATAAGAGCAATGGAAGTGTCTTCTTTGTTGTGA

Coding sequence (CDS)

ATGTTTAGAAGATCGAGTTTGGAAGAAACTACAGGGTTGGAAGGAAAAGTTTTCTCTGGATGTGGAAAGGAGATTCTTATCAAAAGTGTTGTCCAAGCCATCCCAACATATGCTATGGGATGTTTCCATTTGCCGAAGAGCCTTGTCTTAAAAATATCTTCCCTTTGTGCAAAATTTTGGTGGGGGAGTAGTGAGGAACGTTGGAGAATTCATTGGATGCGGTGGGAGAAGCTTTGCCAACCAAAAGAGTTAGGTGGCCTAAACTTCCGTGATATTGAGGGGTTCAATCAGGTCATGTTGGCAAAAACAAACTGGAAGGCAATCACCTGCATTCGTTCAAAAGTCCTCGGAGGAATCAGAGCCTTGAGGGTCGGGGAAAGAGAAAGCGAAGAACAAAGCAAAGCATATGGATTCAGTTCGCATCACCATGTGGACACCGCTATCATTTGTCCAATCTGTGGTAAACATCCTAAATCAACTGATCATGTCTTATTCAGATGCTCCCGAGCCAAGCAGCCAATTCCAGATACTCATGTGAGATGCAAATGGATTGCAGAATACTTACGGGAGTACCAAGTTCAGAATGGGTTAATGTTGAAACTGATGACTCGCAATATACAACCTTTCAATATTGGTCCTACATCTAATATGTTGGTAATTCACGTGGATGCAACTTGGGATGAAAGACGGAAGGTTTCGGATTTTGGAGTGGTAATTCGAAATTATGAAGGGGAGGTAATTGTTGCTCTGAAAGGAAATTGCCCTTTTTTGATTACTTCAAGTTGTGCAGAGGCGAGAGCAATATTAGAGAGACTTCGACTTGCAGAAAATATGGGAGCTCAACAGATTAAGATTTTTTCTGACTGCCTAACTGTAGTGTCAATGATACAAGGGACGGAGATAAGAGCAATGGAAGTGTCTTCTTTGTTGTGA

Protein sequence

MFRRSSLEETTGLEGKVFSGCGKEILIKSVVQAIPTYAMGCFHLPKSLVLKISSLCAKFWWGSSEERWRIHWMRWEKLCQPKELGGLNFRDIEGFNQVMLAKTNWKAITCIRSKVLGGIRALRVGERESEEQSKAYGFSSHHHVDTAIICPICGKHPKSTDHVLFRCSRAKQPIPDTHVRCKWIAEYLREYQVQNGLMLKLMTRNIQPFNIGPTSNMLVIHVDATWDERRKVSDFGVVIRNYEGEVIVALKGNCPFLITSSCAEARAILERLRLAENMGAQQIKIFSDCLTVVSMIQGTEIRAMEVSSLL
Homology
BLAST of Lag0006051 vs. NCBI nr
Match: XP_015382715.1 (uncharacterized protein LOC107175626 [Citrus sinensis])

HSP 1 Score: 132.1 bits (331), Expect = 8.2e-27
Identity = 96/346 (27.75%), Postives = 146/346 (42.20%), Query Frame = 0

Query: 16  KVFSGCGKEILIKSVVQAIPTYAMGCFHLPKSLVLKISSLCAKFWWGSSEERWRIHWMRW 75
           K+FS  GKEILIK+V QA+P YAM  F L K L   I    AKFWWGS E+R+ IHW RW
Sbjct: 27  KMFSSGGKEILIKAVAQAVPVYAMSVFRLIKGLCDDIQKTIAKFWWGSREDRYGIHWSRW 86

Query: 76  EKLCQPKELGGLNFRDIEGFNQVMLAKTNWKAI-----------------------TCIR 135
           +K+ Q K  GGL FRD+  FNQ ++AK  W+ +                       T + 
Sbjct: 87  DKMSQVKSRGGLGFRDLTSFNQALVAKQAWRLLQLPNLLLARVLQAKYYKHSLFLNTTVG 146

Query: 136 SKVLGGIRALRVGERESEEQSKAYGFSSHHHVDTAIICPICGKHPKSTDHVLFR-----C 195
           S +    +++  G +  E+  K +            + P   +H       +F      C
Sbjct: 147 SNLSFIWKSILWGRQVIEKARKTWN-----------LAPSTFEHQNVPGQDIFSYIQNLC 206

Query: 196 SRAKQPIPDTHVRCKWIAEYLREYQVQNGLMLKLM------------------------- 255
           S +K+   +  +   W   Y R   +     ++ M                         
Sbjct: 207 SNSKRNEAELMIMYCWTIWYARNKLIFERKQIEPMFSAAKAESMLEAYHRVRKAGTLHIS 266

Query: 256 -TRNI-QPFNIGPTSNMLVIHVDATWDERRKVSDFGVVIRNYEGEVIVALKGNCPFLITS 307
            TR + Q     P  N+L ++VDA  + + +    G V+R+  G V+ A      F    
Sbjct: 267 NTREVSQQRWSPPPKNVLKLNVDAATNNKNQKVGLGAVLRDSNGRVVAAGIKQVSFRKDV 326

BLAST of Lag0006051 vs. NCBI nr
Match: XP_041003981.1 (uncharacterized protein LOC121249338 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-26
Identity = 93/308 (30.19%), Postives = 135/308 (43.83%), Query Frame = 0

Query: 11  TGLEGKVFSGCGKEILIKSVVQAIPTYAMGCFHLPKSLVLKISSLCAKFWWGSSEERWRI 70
           T  +  + S  GKE L+KSV+Q+IPTY+MG F +PK+++ K++ L   FWWG S  R +I
Sbjct: 247 TNWKSNLLSQAGKETLLKSVLQSIPTYSMGIFKIPKAILRKLNQLLQSFWWGQSNHRSKI 306

Query: 71  HWMRWEKLCQPKELGGLNFRDIEGFNQVMLAKTNWKAITCIRSKVLGGIRALRVGERESE 130
           HW+  +KL + K+ GGL FRD E FN  +LAK  WK I    S      +  R  + E  
Sbjct: 307 HWLSSQKLGKSKQKGGLGFRDFEHFNLALLAKQGWKIIQNPHSL---AAQESRYADMEVL 366

Query: 131 EQSKAYGFSSHHHVDTAIICPICGKHPKSTDH----VLFRCSRAKQPIPDTHVRCKWIAE 190
           EQ K             I C  C    +  D      +F      + +  +  R  W+ E
Sbjct: 367 EQWK-------------IFCKECLSPSRLFDRRQSGAIFSSKFKLEILEQSLRRNNWLFE 426

Query: 191 --YLREYQ---------------VQNGLMLKLMTRNIQPFNIGPTSNMLVIHVDATWDER 250
             +   YQ               +QNG   K+         I P  +M   + DA  D+ 
Sbjct: 427 QQFQSPYQLANLIQSELSSIKLWIQNGTQQKVTQAARVNRWIAPPLDMFKANWDAAIDKI 486

Query: 251 RKVSDFGVVIRNYEGEVIVALKGNCPFLITSSCAEARAILERLRLAENMGAQQIKIFSDC 298
                 GV++RN EG V+ +L  +    +     EA A         ++G Q + +  D 
Sbjct: 487 NSRVGIGVIVRNSEGAVMASLCSSMDLFLDPLLGEAIAARRASSFCADLGFQHVILEGDS 538

BLAST of Lag0006051 vs. NCBI nr
Match: XP_030495108.1 (uncharacterized protein LOC115710895 [Cannabis sativa])

HSP 1 Score: 129.4 bits (324), Expect = 5.3e-26
Identity = 55/103 (53.40%), Postives = 76/103 (73.79%), Query Frame = 0

Query: 17  VFSGCGKEILIKSVVQAIPTYAMGCFHLPKSLVLKISSLCAKFWWGSSEERWRIHWMRWE 76
           +FS  GKEILIK+V+QA+P Y M CF + K ++ +I SL A+FWWGS++ + ++HW  W+
Sbjct: 495 LFSQAGKEILIKAVIQALPCYVMSCFRITKGIIHEIESLIARFWWGSTKNKHKLHWGNWK 554

Query: 77  KLCQPKELGGLNFRDIEGFNQVMLAKTNWKAIT---CIRSKVL 117
           KLC+ KE GG+ FRD+E FNQ +LAK  WK IT   C+ SK+L
Sbjct: 555 KLCRLKEEGGMGFRDLEDFNQALLAKQGWKLITNPECLLSKIL 597

BLAST of Lag0006051 vs. NCBI nr
Match: XP_030495126.1 (uncharacterized protein LOC115710915 [Cannabis sativa])

HSP 1 Score: 129.4 bits (324), Expect = 5.3e-26
Identity = 59/130 (45.38%), Postives = 84/130 (64.62%), Query Frame = 0

Query: 12  GLEGKVFSGCGKEILIKSVVQAIPTYAMGCFHLPKSLVLKISSLCAKFWWGSSEERWRIH 71
           G +  +FS  G+EIL+K+++QAIPTY M CF LPK L+  I ++ A+FWWGSS+ + +IH
Sbjct: 685 GWKASLFSQAGREILLKAIIQAIPTYIMSCFRLPKELIKDIHAMMARFWWGSSDTKQKIH 744

Query: 72  WMRWEKLCQPKELGGLNFRDIEGFNQVMLAKTNWKAITCIRSKVLGGIRALRVGERESEE 131
           W  W KLC+PKE GG+ F+++E FNQ +LAK  WK I    S +   ++A         E
Sbjct: 745 WGNWNKLCKPKEKGGMGFKNLELFNQSLLAKQGWKIINNPHSMLARVLKACYYTNSNFLE 804

Query: 132 QSKAYGFSSH 142
            +K  GF S+
Sbjct: 805 -AKVCGFGSY 813

BLAST of Lag0006051 vs. NCBI nr
Match: XP_022131662.1 (uncharacterized protein LOC111004787 [Momordica charantia])

HSP 1 Score: 129.0 bits (323), Expect = 6.9e-26
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 0

Query: 12  GLEGKVFSGCGKEILIKSVVQAIPTYAMGCFHLPKSLVLKISSLCAKFWWGSSEERWRIH 71
           G +   FS  GKE+LIKSV QAIP YAM  F LPK    ++S + A+FWWGSS +  ++H
Sbjct: 3   GWKRSFFSVGGKEVLIKSVGQAIPAYAMSVFRLPKGFCEEVSQMFARFWWGSSNDTKKLH 62

Query: 72  WMRWEKLCQPKELGGLNFRDIEGFNQVMLAKTNWKAI 109
           WM WE++C PKELGGLNFRD+EGFNQ ++AK  W+ +
Sbjct: 63  WMSWERMCLPKELGGLNFRDLEGFNQALVAKQVWRVL 99

BLAST of Lag0006051 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.8e-16
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 0

Query: 33  AIPTYAMGCFHLPKSLVLKISSLCAKFWWGSSEERWRIHWMRWEKLCQPKE-LGGLNFRD 92
           A+P YAM CF L K L  K++S   +FWW S E + +I W+ W+KLC+ KE  GGL FRD
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 93  IEGFNQVMLAKTNWKAI 109
           +  FNQ +LAK +++ I
Sbjct: 62  LGWFNQALLAKQSFRII 78

BLAST of Lag0006051 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-13
Identity = 31/98 (31.63%), Postives = 58/98 (59.18%), Query Frame = 0

Query: 11  TGLEGKVFSGCGKEILIKSVVQAIPTYAMGCFHLPKSLVLKISSLCAKFWWGSSEERWRI 70
           +G   K  S  G+  L K+V+ ++P ++M    LP+S++ ++  L   F WGS+ E+ + 
Sbjct: 25  SGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKKKQ 84

Query: 71  HWMRWEKLCQPKELGGLNFRDIEGFNQVMLAKTNWKAI 109
           H ++W K+C PK+ GGL  R  +  N+ +++K  W+ +
Sbjct: 85  HLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLL 122

BLAST of Lag0006051 vs. ExPASy TrEMBL
Match: A0A803NUL5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.3e-29
Identity = 93/300 (31.00%), Postives = 146/300 (48.67%), Query Frame = 0

Query: 12  GLEGKVFSGCGKEILIKSVVQAIPTYAMGCFHLPKSLVLKISSLCAKFWWGSSEERWRIH 71
           G +  +FS  GKEILIK+V+QA+P Y M CF + K ++  I SL A+FWWGS+    +IH
Sbjct: 110 GWKRGLFSQAGKEILIKAVIQALPCYVMSCFRITKGIIHDIESLIARFWWGSTSNNHKIH 169

Query: 72  WMRWEKLCQPKELGGLNFRDIEGFNQVMLAKTNWKAI---TCIRSKVLGGIRALRVGERE 131
           W +W KLC+ KE GG+ FRD+E FNQ +LAK  WK +    C+ ++VL  +      E  
Sbjct: 170 WGKWSKLCKLKENGGMGFRDLEDFNQALLAKQGWKILQQPDCLLARVLKAL--YFPNENF 229

Query: 132 SEEQSKAYGFSSHHHV--DTAIICPICGKHP------------KSTDHVLFRCSRAKQPI 191
            E +   +G S    +     +I    GK              +  ++ +F     +Q  
Sbjct: 230 FEAKLGHFGSSVWRGILWGRDLIVKAYGKGRVAGFIGFSWLIWQRRNNFVF-----QQKH 289

Query: 192 PDTHVRCKWIAEYLREYQVQNGLMLKLMTRNIQPFN-IGPTSNMLVIHVDATWDERRKVS 251
           P  H+   W  +++  YQ+     L L+  N    +   P S+  +I+ DA+        
Sbjct: 290 PADHLWLSWAVDFI-AYQLGQQQQLPLLVHNKPTVSWQPPPSDFHLINTDASLKLGHLGC 349

Query: 252 DFGVVIRNYEGEVIVALKGNCPFLITSSCAEARAILERLRLAENMGAQQIKIFSDCLTVV 294
               +IRN  G+++VA        +T   AEA AI   ++LA      +  + SDC+ ++
Sbjct: 350 GLSAIIRNPAGDLVVAEVKYIQGCMTVPMAEAAAIHLGVQLAVRWSINKAWVGSDCINLI 401

BLAST of Lag0006051 vs. ExPASy TrEMBL
Match: A0A803PAN7 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.8e-28
Identity = 55/101 (54.46%), Postives = 76/101 (75.25%), Query Frame = 0

Query: 8    EETTGLEGKVFSGCGKEILIKSVVQAIPTYAMGCFHLPKSLVLKISSLCAKFWWGSSEER 67
            ++  G +  +FS  G+E+L+K+V+QAIPTY M CF LPK L+  I ++ A+FWWGSSE +
Sbjct: 975  DQLQGWKASLFSQAGREVLLKAVIQAIPTYVMSCFRLPKELIKDIHAMMARFWWGSSESK 1034

Query: 68   WRIHWMRWEKLCQPKELGGLNFRDIEGFNQVMLAKTNWKAI 109
             +IHW RWEKLC+PK+ GG+ F+D+E FNQ +LAK  WK I
Sbjct: 1035 NKIHWGRWEKLCKPKDKGGMGFKDLEKFNQSLLAKQGWKII 1075

BLAST of Lag0006051 vs. ExPASy TrEMBL
Match: A0A803QSN3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.6e-28
Identity = 55/101 (54.46%), Postives = 76/101 (75.25%), Query Frame = 0

Query: 8   EETTGLEGKVFSGCGKEILIKSVVQAIPTYAMGCFHLPKSLVLKISSLCAKFWWGSSEER 67
           ++  G +  +FS  G+E+L+K+V+QAIPTY M CF LPK L+  I ++ A+FWWGSSE +
Sbjct: 215 DKLQGWKASLFSQAGREVLLKAVIQAIPTYVMSCFRLPKELIKDIHAMMARFWWGSSESK 274

Query: 68  WRIHWMRWEKLCQPKELGGLNFRDIEGFNQVMLAKTNWKAI 109
            +IHW RWEKLC+PK+ GG+ F+D+E FNQ +LAK  WK I
Sbjct: 275 NKIHWGRWEKLCKPKDKGGMGFKDLEKFNQSLLAKQGWKII 315

BLAST of Lag0006051 vs. ExPASy TrEMBL
Match: A0A803QSM5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 8.0e-28
Identity = 55/101 (54.46%), Postives = 76/101 (75.25%), Query Frame = 0

Query: 8    EETTGLEGKVFSGCGKEILIKSVVQAIPTYAMGCFHLPKSLVLKISSLCAKFWWGSSEER 67
            ++  G +G +FS  G+E+L+K+V+QAIPTY M CF LPK L+  I ++ A+FWWGSSE +
Sbjct: 1013 DKLQGWKGSLFSQAGREVLLKAVIQAIPTYVMSCFRLPKELIKDIHAMMARFWWGSSESK 1072

Query: 68   WRIHWMRWEKLCQPKELGGLNFRDIEGFNQVMLAKTNWKAI 109
             +IHW RWEKLC+PK+  G+ F+D+E FNQ +LAK  WK I
Sbjct: 1073 NKIHWGRWEKLCKPKDKCGMGFKDLEKFNQSLLAKQGWKII 1113

BLAST of Lag0006051 vs. ExPASy TrEMBL
Match: A0A803P8L6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-27
Identity = 97/354 (27.40%), Postives = 150/354 (42.37%), Query Frame = 0

Query: 17  VFSGCGKEILIKSVVQAIPTYAMGCFHLPKSLVLKISSLCAKFWWGSSEERWRIHWMRWE 76
           +FS  GKEILIK++VQA+P YAM CF + K ++ +I S+ A FWWG+S ++ +IHW  WE
Sbjct: 564 LFSQAGKEILIKAIVQALPCYAMSCFRISKGILHEIESMIASFWWGASSKKHKIHWGSWE 623

Query: 77  KLCQPKELGGLNFRDIEGFNQVMLAKTNWKAIT---CIRSKVL----------------- 136
           K+C+ KE GG+ FR++E FNQ +LAK  WK +T   C+ +KVL                 
Sbjct: 624 KMCKLKEQGGMGFRELESFNQALLAKQGWKILTNPDCLMAKVLKALYFPNNNFLEAKVGH 683

Query: 137 ------------------------GGIRALRVGERESEEQSKAYGFSSHHHVDTAIICPI 196
                                   G    +R+ E     +   +   S  +V   +    
Sbjct: 684 YGSHIWRGIVWGRELLLKGYRWHIGNGLTIRINEDPWLPRGAPFALRSKVNVPEGVTIHT 743

Query: 197 CGKHPKSTDHVLFRCSRAK--------------QPIPDTHVRCKWIAEYLREYQVQNGLM 256
              H  S     ++C                   P  +      W      +Y V +G  
Sbjct: 744 LLNHDGS-----WKCDELTGWFHHEDIPWVLGINPNREREDIIGWSFTPNGQYTVASGYK 803

Query: 257 LKLMTRNIQPFNIGPTSNM--------------LVIHVDATWDERRKVSDFGVVIRNYEG 299
           L+     +Q  +  P  +M               +I+ DA+    +     G+VIR++ G
Sbjct: 804 LRFSHLQLQTDSTPPLPSMKKSPVSWSPPPSGTFMINTDASLVVGQPGCGLGMVIRDHLG 863

BLAST of Lag0006051 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 86.3 bits (212), Expect = 4.8e-17
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 0

Query: 33  AIPTYAMGCFHLPKSLVLKISSLCAKFWWGSSEERWRIHWMRWEKLCQPKE-LGGLNFRD 92
           A+P YAM CF L K L  K++S   +FWW S E + +I W+ W+KLC+ KE  GGL FRD
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 93  IEGFNQVMLAKTNWKAI 109
           +  FNQ +LAK +++ I
Sbjct: 62  LGWFNQALLAKQSFRII 78

BLAST of Lag0006051 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-15
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 33  AIPTYAMGCFHLPKSLVLKISSLCAKFWWGSSEERWRIHWMRWEKLCQPKELGGLNFRDI 92
           A+PTY M CF LPK++  +I S+ A FWW + +E   +HW  W+ L   K  GG+ F+DI
Sbjct: 2   ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61

Query: 93  EGFNQVMLAKTNWKAIT 110
           E FN  +L K  W+ ++
Sbjct: 62  EAFNLALLGKQMWRMLS 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_015382715.18.2e-2727.75uncharacterized protein LOC107175626 [Citrus sinensis][more]
XP_041003981.11.4e-2630.19uncharacterized protein LOC121249338 [Juglans microcarpa x Juglans regia][more]
XP_030495108.15.3e-2653.40uncharacterized protein LOC115710895 [Cannabis sativa][more]
XP_030495126.15.3e-2645.38uncharacterized protein LOC115710915 [Cannabis sativa][more]
XP_022131662.16.9e-2656.70uncharacterized protein LOC111004787 [Momordica charantia][more]
Match NameE-valueIdentityDescription
P932956.8e-1649.35Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
P0C2F63.1e-1331.63Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
Match NameE-valueIdentityDescription
A0A803NUL53.3e-2931.00Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PAN72.8e-2854.46Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803QSN33.6e-2854.46Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803QSM58.0e-2854.46Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803P8L61.4e-2727.40Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
ATMG00310.14.8e-1749.35RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT4G29090.11.5e-1542.86Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 217..308
e-value: 1.5E-8
score: 36.8
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 222..300
e-value: 2.8E-12
score: 46.5
IPR002156Ribonuclease H domainPROSITEPS50879RNASE_Hcoord: 242..310
score: 9.012149
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 12..286
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 12..286
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 220..300
e-value: 2.19135E-10
score: 55.398
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 216..300

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006051.1Lag0006051.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity