Lag0006050 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006050
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon gag protein
Locationchr6: 36653584 .. 36655762 (+)
RNA-Seq ExpressionLag0006050
SyntenyLag0006050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTGGGACGATATGCTAGGAACTAGAGACCTTACAACCCAAGGTGGCAAGACCATCCCAATTTCAACTACAGGAACCAGCAAAAACCTCTCGTGTTTAAACGCAATCAGGCATATAGCTCATCTTCATGTATGTCTTTAGAAGACATTGTTAAGAAATTTGATGACAGTTTCTTCCAATTCCAATAGGAAACGAGGAACACAATTCAAAATCTAGGGAACCAGATGACCCACCTGGCGGTGCAGGTTAGCAAAATGGAGAACAAGAGCTCGGACAAACTCCTTACGCAACCAAAAGTGAATCCCAAGGCGAACAACAACGCCATATGGATTGGAGTGGCCGCACCAAACCCATCTTCCAGATTTTTCTCTCTTCCAGATTTTTTCCTTTCCCCTTGTGTTTATTTGACTGATCCTACCCCTTGTGATTCTTCTAGGACAGTGTTTCCACCTTCTTAGATGATTTGGTGGCTTTCAGGAGGGTGAAGGTCAACATTCCATTACTTGAGGCAGTACTTGAAATTCCATCCTATGTTGAGTTTCTCAAGACTTGGTACGAAGGTAAAGTGAAGTCCTCGGGTAAAGAAGAGGTTAGTGAAAATGTCATTGTGCTATTGCCCAATGAGTTGCCTAAGAAATGCCTTGATCCTGGTATGTTTACTTTATCGTGCATGATCAGAACAAATAGAATAAAACATGTCATGTTAGATTTAGGAACATTTATAAATGTCATGCCTATTTCTTTGTACAGAGAGTTAGGTTTGACTAATCTTAGGAAATCAGACATAGTGATACACCTAGCAGACTGCTCATGCGTAAAATCTCTAGGAATTAATGAGATTGTTCTGGTAAAAGTAGAGGACTTGGTTTTTCCTACCGATTTATATGTGTTAGATACACGTACTTCTATATCTTATTCTTCTTCTACATCACTACTCCTTTGTCGTCCCTGTAGGAGTGTAAATCACTCGAGCGAATACGATTTCAGATCTTAGGTGCTTAATTACATGAATTTCTCAATCAAAGCACACTTATTTTTAACCCAAAAACAGAGCATTAAGAACTTACCTCTTTGATGCTCGAATTCTTGCAATCCGTGAGCTGTTTCTCATCACGATCTTGTCGTGGACCACCATTGAGATCTTCCTCGCTATTCTCCGACCATAGAACAGGCTTGTGGGAGTTGGTAAGTGATGAATTTTGAGAGCAAAATGATGTGTGTTTGAGAGAGAGTCACACAGTTTTGAGAGGAAACTTTTAAGCTTTCTTTCTTGGAATATCCAACAACCCATTTCCTCTTCTTTCAATCTCTTTTTAAACAGATAAACCATGCAATCACCTATTGCATAAAGAGGACAAAACATCTAAGATGAGGTATTAGTCATTGGATTGGTGTTAACATATAGGATTTTAACTCTTGGGTAAAATTAAATGAAACGTGATTTTGAAAATTAATTTCTTACAATTATTAATTCAAATAATCAGTAACTAATTTCAAAATCAATTTTCCAAATCAATTTCAAATCAAACTAATTTTAAATAAAATTAATTAAACCATTTAATTAATTATATTAATTTAATATAAAATATTAAACTAATTCTTTGCACCAACCGTGACCTCTCTCAATCCTGGCTTTGAATACAAATCCCTATTCATATCCAAACCTATATATGTATCGTCTACACGTCAACGATATTAAAATAATATTTAAATATCTCCAACTCTCTCTATAGTTTAATTCATAACTAAGCTATAATGTTAATATTATCACATATAATTAACGTTAACTCCCTAAACCGAATTTGAATGATTCAAATTCTCTCATCACATTATTCTAAGGTTCAGTTCGTATGAAGGGGGACCTAATGGCCCTACAGATCATGGGCTCCAACAATTTGAGATTAACTGACTAAACTCATTAACCTAATTAACCAACATTCGTTAACTACCGGGACATTCCACTATAGCCCGTAGTTGCACTCCCCTCATTGTAGATATATTTCTATCCACCAAATATAACTATAATCAGTAAGCCGACCCTCCACAGGTTGTTTGCAACTATAGCTGGGTCAAATGTTCGTTTTACCCCTGAAGTTGTTCATGATCTGTAGGTCCATTAGGTTCCCTTGCTAGCTTAAGGAACAAACTTTGGAACAATATGATGGAAAGAATTTGA

mRNA sequence

ATGTTGTGGGACGATATGCTAGGAACTAGAGACCTTACAACCCAAGGTGGCAAGACCATCCCAATTTCAACTACAGGAACCAGCAAAAACCTCTCGTGTTTAAACGCAATCAGGCATATAGCTCATCTTCATGACAGTGTTTCCACCTTCTTAGATGATTTGGTGGCTTTCAGGAGGGTGAAGGTCAACATTCCATTACTTGAGGCAGTACTTGAAATTCCATCCTATGTTGAGTTTCTCAAGACTTGGTACGAAGGTAAAGTGAAGTCCTCGGGTAAAGAAGAGGTTAGTGAAAATGTCATTGTGCTATTGCCCAATGAGTTGCCTAAGAAATGCCTTGATCCTGGTCCATTAGGTTCCCTTGCTAGCTTAAGGAACAAACTTTGGAACAATATGATGGAAAGAATTTGA

Coding sequence (CDS)

ATGTTGTGGGACGATATGCTAGGAACTAGAGACCTTACAACCCAAGGTGGCAAGACCATCCCAATTTCAACTACAGGAACCAGCAAAAACCTCTCGTGTTTAAACGCAATCAGGCATATAGCTCATCTTCATGACAGTGTTTCCACCTTCTTAGATGATTTGGTGGCTTTCAGGAGGGTGAAGGTCAACATTCCATTACTTGAGGCAGTACTTGAAATTCCATCCTATGTTGAGTTTCTCAAGACTTGGTACGAAGGTAAAGTGAAGTCCTCGGGTAAAGAAGAGGTTAGTGAAAATGTCATTGTGCTATTGCCCAATGAGTTGCCTAAGAAATGCCTTGATCCTGGTCCATTAGGTTCCCTTGCTAGCTTAAGGAACAAACTTTGGAACAATATGATGGAAAGAATTTGA

Protein sequence

MLWDDMLGTRDLTTQGGKTIPISTTGTSKNLSCLNAIRHIAHLHDSVSTFLDDLVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVSENVIVLLPNELPKKCLDPGPLGSLASLRNKLWNNMMERI
Homology
[Close]
BLAST of Lag0006050 vs. NCBI nr
Match: XP_024955632.1 (uncharacterized protein LOC112498603 [Citrus sinensis])

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-08
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 54  LVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVS--ENVIVLLPNELPKK 113
           L  FR+V+VNIPLL+A+ ++P Y +FLK     K K SG E+VS  ENV  +L  +LP K
Sbjct: 545 LETFRKVEVNIPLLDAIKQVPRYAKFLKELCSNKRKLSGNEKVSVGENVSAVLQRKLPPK 604

Query: 114 CLDPGPL 119
           C DPGP+
Sbjct: 605 CKDPGPM 611

[Close]
BLAST of Lag0006050 vs. NCBI nr
Match: XP_024038241.1 (uncharacterized protein LOC112097289 [Citrus clementina] >XP_024038242.1 uncharacterized protein LOC112097290 [Citrus clementina])

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-08
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 54  LVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVS--ENVIVLLPNELPKK 113
           L  FR+V+VNIPLL+A+ ++P Y +FLK     K K SG E+VS  ENV  +L  +LP K
Sbjct: 446 LETFRKVEVNIPLLDAIKQVPRYAKFLKELCSNKRKLSGNEKVSVGENVSAVLQRKLPPK 505

Query: 114 CLDPGPL 119
           C DPGP+
Sbjct: 506 CKDPGPM 512

[Close]
BLAST of Lag0006050 vs. NCBI nr
Match: XP_015385876.1 (uncharacterized protein LOC107177106 [Citrus sinensis])

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-08
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 54  LVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVS--ENVIVLLPNELPKK 113
           L  FR+V+VNIPLL+A+ ++P Y +FLK     K K SG E+VS  ENV  +L  +LP K
Sbjct: 286 LETFRKVEVNIPLLDAIKQVPRYAKFLKELSSNKRKLSGNEKVSVGENVSAVLQRKLPPK 345

Query: 114 CLDPGPL 119
           C DPGP+
Sbjct: 346 CKDPGPM 352

[Close]
BLAST of Lag0006050 vs. NCBI nr
Match: OMO96175.1 (Retrotransposon gag protein [Corchorus capsularis])

HSP 1 Score: 68.2 bits (165), Expect = 6.4e-08
Identity = 34/82 (41.46%), Postives = 45/82 (54.88%), Query Frame = 0 

Query: 52  DDLVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVSENVIVLLPNELPKK 111
           D L  FR+VKVNIP+L+A+ +IP+Y +FLK     K +  GK     NV  +L   LP K
Sbjct: 655 DILEIFRKVKVNIPILDAIQQIPNYEKFLKQLCTNKKRLQGKVSAGANVSAVLQKSLPPK 714

Query: 112 CLDPGPLGSLASLRNKLWNNMM 134
           C DPG      S+   +  N M
Sbjct: 715 CKDPGTFSITCSIERSIIENAM 736

[Close]
BLAST of Lag0006050 vs. NCBI nr
Match: XP_024042783.1 (uncharacterized protein LOC112099602 [Citrus clementina])

HSP 1 Score: 68.2 bits (165), Expect = 6.4e-08
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 0 

Query: 54  LVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVS--ENVIVLLPNELPKK 113
           L  FR+V+VNIPLL+A+ ++P Y +F K     K K SG E+VS  ENV  +L  +LP K
Sbjct: 114 LETFRKVEVNIPLLDAIKQVPRYAKFFKELCSNKRKLSGNEKVSVGENVSAVLQRKLPPK 173

Query: 114 CLDPGPL 119
           C DPGP+
Sbjct: 174 CKDPGPM 180

The following BLAST results are available for this feature:
BLAST of Lag0006050 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_024955632.12.2e-0852.24uncharacterized protein LOC112498603 [Citrus sinensis][more]
XP_024038241.12.2e-0852.24uncharacterized protein LOC112097289 [Citrus clementina] >XP_024038242.1 unchara... [more]
XP_015385876.12.2e-0852.24uncharacterized protein LOC107177106 [Citrus sinensis][more]
OMO96175.16.4e-0841.46Retrotransposon gag protein [Corchorus capsularis][more]
XP_024042783.16.4e-0850.75uncharacterized protein LOC112099602 [Citrus clementina][more]
BLAST of Lag0006050 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006050.1Lag0006050.1mRNA