Lag0006006 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006006
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon protein
Locationchr6: 35561382 .. 35561744 (-)
RNA-Seq ExpressionLag0006006
SyntenyLag0006006
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGGTGCAGATAAACACCTGAAACACATCTGGACGAGGCAGGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAAGCCCGGTACCTAGCTCGACTGAAGCGGATGATAAAAGAGAAAATGTCGACCTGCACCATTAGATTCAACGTCCATAATAGACTGTAAGGTGCAGTCCTTGAAACGGCAATACAGTGCCATCTTAGAGATGTTGGGTCTGGACTGCAGTGGATTCGGTTGGAATGATGAGTTTAAATGCGTCCAGGTTGAGAAGGAGGTCTATGATGCATGGGTGAAGATACGGTCATTAGTCATTCATTGA

mRNA sequence

ATGGCAGGTGCAGATAAACACCTGAAACACATCTGGACGAGGCAGGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAAGCCCGACTGTAAGGTGCAGTCCTTGAAACGGCAATACAGTGCCATCTTAGAGATGTTGGGTCTGGACTGCAGTGGATTCGGTTGGAATGATGAGTTTAAATGCGTCCAGGTTGAGAAGGAGGTCTATGATGCATGGGTGAAGATACGGTCATTAGTCATTCATTGA

Coding sequence (CDS)

ATGGCAGGTGCAGATAAACACCTGAAACACATCTGGACGAGGCAGGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAAGCCCGACTGTAAGGTGCAGTCCTTGAAACGGCAATACAGTGCCATCTTAGAGATGTTGGGTCTGGACTGCAGTGGATTCGGTTGGAATGATGAGTTTAAATGCGTCCAGGTTGAGAAGGAGGTCTATGATGCATGGGTGAAGATACGGTCATTAGTCATTCATTGA

Protein sequence

MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKPDCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKCVQVEKEVYDAWVKIRSLVIH
Homology
BLAST of Lag0006006 vs. NCBI nr
Match: XP_038889264.1 (uncharacterized protein At2g29880-like [Benincasa hispida])

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-23
Identity = 60/111 (54.05%), Postives = 71/111 (63.96%), Query Frame = 0

Query: 1   MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKP------------------ 60
           MA  +K  KHIWT+ E+ARLVESL++LV E GW+ D  TFKP                  
Sbjct: 1   MARREKMTKHIWTKVEDARLVESLLQLV-ETGWQADKETFKPGYLQQLQCLFTEKIPSCS 60

Query: 61  ------DCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKCVQVEKEVYDAWV 88
                 +CKV+ LKRQY AI+EML   C+GFGWNDEFKCVQVEKEV+D WV
Sbjct: 61  IRLSTIECKVRFLKRQYCAIVEMLSNACNGFGWNDEFKCVQVEKEVFDVWV 110

BLAST of Lag0006006 vs. NCBI nr
Match: XP_038896734.1 (uncharacterized protein At2g29880-like [Benincasa hispida])

HSP 1 Score: 118.6 bits (296), Expect = 2.9e-23
Identity = 58/109 (53.21%), Postives = 72/109 (66.06%), Query Frame = 0

Query: 1   MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKP------------------ 60
           MAG +K  KHIWT+ E+ARLVESL+ +V E  W+ DNGTFKP                  
Sbjct: 1   MAGREKMTKHIWTKVEDARLVESLLHMV-ETCWQADNGTFKPGYLQRLLNEKIFSCSIGL 60

Query: 61  ---DCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKCVQVEKEVYDAWVK 89
              +CKV+ LK+QY AI+EML   C+ FGWNDEFKCV+VEKEV+D WV+
Sbjct: 61  STIECKVRFLKQQYCAIVEMLSNACNEFGWNDEFKCVEVEKEVFDVWVQ 108

BLAST of Lag0006006 vs. NCBI nr
Match: KAA0035413.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 2.9e-23
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 0

Query: 1   MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKPDCKVQSLKRQYSAILEML 60
           MA + + LKH WT++EEA LVE LVELV+ GGWR DNGTF+P  +++ LKR + AI EM 
Sbjct: 107 MASSLRLLKHNWTKEEEAGLVECLVELVNAGGWRSDNGTFRPG-RIKLLKRMFHAIAEMC 166

Query: 61  GLDCSGFGWNDEFKCVQVEKEVYDAWVK 89
           G  CS FGWNDE KC+  EKEV+D WVK
Sbjct: 167 GPTCSRFGWNDEQKCIVAEKEVFDNWVK 193

BLAST of Lag0006006 vs. NCBI nr
Match: KAA0036099.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 6.4e-23
Identity = 51/118 (43.22%), Postives = 74/118 (62.71%), Query Frame = 0

Query: 1   MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKP------------------ 60
           M+ +++  +H+WTR+EE  LVE L+ELV  GGW+ DNGTF+P                  
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  -------DCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKCVQVEKEVYDAWVKIRSLV 94
                  DC++++LKR + AI EM G  CSGFGWNDE KC+  EKE++D WV++R+++
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRVRNII 118

BLAST of Lag0006006 vs. NCBI nr
Match: KAA0057175.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK18787.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-22
Identity = 51/93 (54.84%), Postives = 65/93 (69.89%), Query Frame = 0

Query: 1  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKPDCKVQSLKRQYSAILEML 60
          M  + +  KH WT++EEA LVE LVELV+ GGWR DNG F+P  +++ +KR + A+ EM 
Sbjct: 1  MTSSSRLSKHSWTKEEEAGLVECLVELVNAGGWRSDNGAFRPG-RIKLMKRMFHALAEMR 60

Query: 61 GLDCSGFGWNDEFKCVQVEKEVYDAWVKIRSLV 94
          G  CSGFGWNDE KC+  EKEV+D WVK    V
Sbjct: 61 GPTCSGFGWNDEQKCIVAEKEVFDDWVKSHQTV 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038889264.11.7e-2354.05uncharacterized protein At2g29880-like [Benincasa hispida][more]
XP_038896734.12.9e-2353.21uncharacterized protein At2g29880-like [Benincasa hispida][more]
KAA0035413.12.9e-2361.36retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon p... [more]
KAA0036099.16.4e-2343.22retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0057175.11.4e-2254.84retrotransposon protein [Cucumis melo var. makuwa] >TYK18787.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 6..43
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 45..88
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 6..43
coord: 45..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006006.1Lag0006006.1mRNA