Lag0006003 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006003
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr6: 35534724 .. 35535191 (-)
RNA-Seq ExpressionLag0006003
SyntenyLag0006003
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATGTGGGATCTAATAGAGAAGGAGGGGAAGGTTATCGAAGCGGTAGATGGGAATGTGTTGTTTTCGAATGTAAGGATATTGACTTGTGTATAGTCACAAAAGTGATCTCAAGCAAGAAGGTAAACTGTGATGCTTTTAGATCTGTTATGAGGTCAGTTTGGAGGGTACACCATAATACGAGGGTCGAGTCTGCTAGAAATAATGTCTTCTTTGTCCAGTTTAAGACTAAAATGGAAAAGGCGAGGGTTATAAGTTCAGACCCCTGGACTTTTGACAAATCACTTATAGTTATGATATCACCAAAGGAGAATGATCAGATTGTTGATATGAAATTTAGTGAAGAGACATTATGGGTTCAGGTTCATAATGTGCTCGTGAATTACATGACTGTGGAGATGGCTAAACTAGTAGGAGACGTAGTGGGGACTGTGGAAGAGATAGATGGGGATGGGGGAGAATAG

mRNA sequence

ATGGAAGATGTGGGATCTAATAGAGAAGGAGGGGAAGGTTATCGAAGCGGTAGATGGGAATGTGTTGTTTTCGAATGTAAGGATATTGACTTGTGTATAGTCACAAAAGTGATCTCAAGCAAGAAGGTAAACTGTGATGCTTTTAGATCTGTTATGAGGTCAGTTTGGAGGGTACACCATAATACGAGGGTCGAGTCTGCTAGAAATAATGTCTTCTTTGTCCAGTTTAAGACTAAAATGGAAAAGGCGAGGGTTATAAGTTCAGACCCCTGGACTTTTGACAAATCACTTATAGTTATGATATCACCAAAGGAGAATGATCAGATTGTTGATATGAAATTTAGTGAAGAGACATTATGGGTTCAGGTTCATAATGTGCTCGTGAATTACATGACTGTGGAGATGGCTAAACTAGTAGGAGACGTAGTGGGGACTGTGGAAGAGATAGATGGGGATGGGGGAGAATAG

Coding sequence (CDS)

ATGGAAGATGTGGGATCTAATAGAGAAGGAGGGGAAGGTTATCGAAGCGGTAGATGGGAATGTGTTGTTTTCGAATGTAAGGATATTGACTTGTGTATAGTCACAAAAGTGATCTCAAGCAAGAAGGTAAACTGTGATGCTTTTAGATCTGTTATGAGGTCAGTTTGGAGGGTACACCATAATACGAGGGTCGAGTCTGCTAGAAATAATGTCTTCTTTGTCCAGTTTAAGACTAAAATGGAAAAGGCGAGGGTTATAAGTTCAGACCCCTGGACTTTTGACAAATCACTTATAGTTATGATATCACCAAAGGAGAATGATCAGATTGTTGATATGAAATTTAGTGAAGAGACATTATGGGTTCAGGTTCATAATGTGCTCGTGAATTACATGACTGTGGAGATGGCTAAACTAGTAGGAGACGTAGTGGGGACTGTGGAAGAGATAGATGGGGATGGGGGAGAATAG

Protein sequence

MEDVGSNREGGEGYRSGRWECVVFECKDIDLCIVTKVISSKKVNCDAFRSVMRSVWRVHHNTRVESARNNVFFVQFKTKMEKARVISSDPWTFDKSLIVMISPKENDQIVDMKFSEETLWVQVHNVLVNYMTVEMAKLVGDVVGTVEEIDGDGGE
Homology
BLAST of Lag0006003 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 131.7 bits (330), Expect = 5.4e-27
Identity = 59/133 (44.36%), Postives = 94/133 (70.68%), Query Frame = 0

Query: 23  VFECKDIDLCIVTKVISSKKVNCDAFRSVMRSVWRVHHNTRVESARNNVFFVQFKTKMEK 82
           +    ++ LC+V K+ +SK+++ +A RSVM+SVWRVH++TR E    N++ + FK+  EK
Sbjct: 29  ILTADNVKLCVVAKLHTSKRISAEAIRSVMKSVWRVHNSTRFEPLGMNIYVILFKSLSEK 88

Query: 83  ARVISSDPWTFDKSLIVMISPKENDQIVDMKFSEETLWVQVHNVLVNYMTVEMAKLVGDV 142
           +RV+SS PWTF+KSL+V+ SP   +Q +DM F+    W+Q+HN+    ++ EMA ++G  
Sbjct: 89  SRVLSSGPWTFNKSLLVLTSPTATNQPLDMNFNFCAFWIQIHNIPFECISTEMANILGAK 148

Query: 143 VGTVEEIDGDGGE 156
           +G VEEI+GDG +
Sbjct: 149 LGDVEEIEGDGAD 161

BLAST of Lag0006003 vs. NCBI nr
Match: XP_022158119.1 (uncharacterized protein LOC111024676, partial [Momordica charantia])

HSP 1 Score: 128.6 bits (322), Expect = 4.5e-26
Identity = 59/128 (46.09%), Postives = 90/128 (70.31%), Query Frame = 0

Query: 23  VFECKDIDLCIVTKVISSKKVNCDAFRSVMRSVWRVHHNTRVESARNNVFFVQFKTKMEK 82
           +   ++I LC V K+ +SK+++  A  SVM+ VW++H +TR+E+A  N++ + FKT +EK
Sbjct: 29  ILTAENIQLCGVGKLHTSKRISAKALASVMKQVWKIHESTRIEAAGLNIYVIAFKTMVEK 88

Query: 83  ARVISSDPWTFDKSLIVMISPKENDQIVDMKFSEETLWVQVHNVLVNYMTVEMAKLVGDV 142
            RV+SS PWTFDKSL V++SP   D+ +D+ F     WVQ+H +   Y+T +MAKL+GD 
Sbjct: 89  KRVLSSGPWTFDKSLFVLVSPTAADKPLDVDFRFCAFWVQIHCIPFEYLTRDMAKLLGDR 148

Query: 143 VGTVEEID 151
           +G VEE+D
Sbjct: 149 LGKVEEVD 156

BLAST of Lag0006003 vs. NCBI nr
Match: XP_022156711.1 (uncharacterized protein LOC111023555 [Momordica charantia])

HSP 1 Score: 116.7 bits (291), Expect = 1.8e-22
Identity = 54/124 (43.55%), Postives = 83/124 (66.94%), Query Frame = 0

Query: 28  DIDLCIVTKVISSKKVNCDAFRSVMRSVWRVHHNTRVESARNNVFFVQFKTKMEKARVIS 87
           +I LC V K+  SK++  +AF SVM+ VW++H++TR+E+A  N++ + FKT  EK RV S
Sbjct: 34  NIQLCAVGKLHPSKRITVEAFASVMKQVWKIHNSTRIETAGLNIYVIAFKTMAEKIRVFS 93

Query: 88  SDPWTFDKSLIVMISPKENDQIVDMKFSEETLWVQVHNVLVNYMTVEMAKLVGDVVGTVE 147
             PWTFDKSL++++     ++ +D+  S    WVQ+H +    MT +MAK +G  +G VE
Sbjct: 94  LGPWTFDKSLLILVPTTAANKPLDIDISLCAFWVQIHYITFECMTKDMAKFLGARLGEVE 153

Query: 148 EIDG 152
           E+DG
Sbjct: 154 EVDG 157

BLAST of Lag0006003 vs. NCBI nr
Match: XP_022155933.1 (uncharacterized protein LOC111022932 [Momordica charantia])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-21
Identity = 54/120 (45.00%), Postives = 84/120 (70.00%), Query Frame = 0

Query: 34  VTKVISSKKVNCDAFRSVMRSVWRVHHNTRVESARNNVFFVQFKTKMEKARVISSDPWTF 93
           V K+ +SK+++ +AFRSVM+S+W+VH +T +E+A  N++ + FK+  EK RV++S PW+F
Sbjct: 40  VGKLHTSKRISVEAFRSVMKSLWKVHESTHIETAGMNLYVIVFKSMAEKNRVLTSGPWSF 99

Query: 94  DKSLIVMISPKENDQIVDMKFSEETLWVQVHNVLVNYMTVEMAKLVGDVVGTVEEIDGDG 153
           + SL+V+ SP   DQ  DM F+   LW+Q+H +    M  +MAK +G  +G VEEID +G
Sbjct: 100 ETSLLVLTSPTATDQPRDMNFNFFALWIQIHCIPFQCMIKDMAKFLGTRIGEVEEIDCNG 159

BLAST of Lag0006003 vs. NCBI nr
Match: TXG73522.1 (hypothetical protein EZV62_002101 [Acer yangbiense])

HSP 1 Score: 104.4 bits (259), Expect = 9.2e-19
Identity = 50/125 (40.00%), Postives = 78/125 (62.40%), Query Frame = 0

Query: 31  LCIVTKVISSKKVNCDAFRSVMRSVWRVHHNTRVESARNNVFFVQFKTKMEKARVISSDP 90
           L +V KV+ SK VN +AFR VM+ VWRV     +E+  +NVF  QFK    + RV+S  P
Sbjct: 39  LSLVGKVLGSKVVNREAFRDVMQRVWRVSGGVEIEAIEDNVFEFQFKNLEARQRVLSGGP 98

Query: 91  WTFDKSLIVMISPKENDQIVDMKFSEETLWVQVHNVLVNYMTVEMAKLVGDVVGTVEEID 150
           W FDK+L+V+  P    +I +M+F+    WVQ+HN+ +  M+ E+   +G+++G V  +D
Sbjct: 99  WRFDKALLVLEEPSGTSEIANMEFNRTEFWVQIHNLPILCMSEEIGLFLGNMIGEVRNVD 158

Query: 151 GDGGE 156
            + G+
Sbjct: 159 LEAGK 163

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022149484.15.4e-2744.36uncharacterized protein LOC111017902 [Momordica charantia][more]
XP_022158119.14.5e-2646.09uncharacterized protein LOC111024676, partial [Momordica charantia][more]
XP_022156711.11.8e-2243.55uncharacterized protein LOC111023555 [Momordica charantia][more]
XP_022155933.11.2e-2145.00uncharacterized protein LOC111022932 [Momordica charantia][more]
TXG73522.19.2e-1940.00hypothetical protein EZV62_002101 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 27..150
e-value: 2.7E-18
score: 65.9
IPR040256Uncharacterized protein At4g02000-likePANTHERPTHR31286GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKEcoord: 30..145
NoneNo IPR availablePANTHERPTHR31286:SF84SUBFAMILY NOT NAMEDcoord: 30..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006003.1Lag0006003.1mRNA