Lag0006000 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006000
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Girdin-like
Location	chr6: 35492413 .. 35495560 (+)
RNA-Seq Expression	Lag0006000
Synteny	Lag0006000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTAAGTTTTTCGAGGAAAGAAGCATGGGTGTCCTTCTTTTCGAATTCCAAATTAGAGCATGTGATTTGGAAGGCACATTGGATGCCCCTAAAAGCCTTAATCTACAGATGCGGGAGCTTCCACACAGTTCCTTTAGTAGGCCCTTGGGGATGCGTCCATTATGCTCCGTTGTTGGCCTTGCGGCAAAGTTGGTTTAAACAGTTCATAACAGCAACTCATGGTCTGCATAAATTAGAATTTTCCTACAGTTGCGAGGATTCTAACTGTAACGCCCCGAATTTCAGGTAAAGTTCTTTTCAAGTCTTAAGTTAATTTCCAGTTAATTAAAGTTCATTATTCGTTTGAATATATGAAAACTTCGCAAGTTTTATTTCGCTTCAATTATTCTCGAATTTAGAGAATTAGAAGAGAAAATTTTCAGTTGTGGAGTTTAGATTGTTTAGTCTTTGAAAATCATTTTGGGCCTTAATTTTTTTAAAGAAACCCTAATTGAATAGATGAAAATAAAAAAGAAATAATATTTCTTTTCTCTCTTCAGTCGCCGCACACGCAAAACCCCTTCCCTGTTTCGTTTTTTTTTCTCCTTCTTCCTTCGATCTTCAGCTTCCCAAGCCAGCCGCAACCTTCAACTTCTCTCGCTTCTTCTCGCCGCTGCCTATCACCTTGACACGGTTGTAGTCTCGTGTGTCACCGTCCTTCTAGCGTCCAGCGTAGGCCGTCACCGTCGTGTGGTTCCAGCTCTCCGTTGCGCGTCGCTTGTCGAAATCGTCTCGCGCGTTCCATAGCTACTGTTCGAGTTGTTGTCGCCGTCGCACGTCATTGGAGTTCAGCAGTGTGAGTATTGGTTGGGTTGGGTACATTTTCTTGAGTTAGTTGTTTCACATGTTGAGTTTTATCGTTGGTTTATTGGAGATTTAGATAACCCAGTATGTTCGAAATTTAGTTTCAGCCTTAATCAGTCGTTCCCGACGTTCAAGCTTCGATACTCAGCCATTTACGCTATTGTCCAGCGAAGTGACTTTAGTTTGGGTAAGGTTCCTTGTTCGTTGAGTCCCATTCTTAGTTATGTTGTTAATTGAAGCTAACCCATTCCCCATTGAACCCGTTTTTATATTACCCATTCGATTTCGGGTTGAAAATTTCAGAGTTTAGCTATTCAGAGGTGTCGTCCAATAGAGGTTAAGGCTAGTTTTCGAGTGGGTCTTTGTGTTGTGTACTTTATTTTGGCTAAGGACGAGGTGAGGACTTAAAGGAAGGATTTGGTGAGTTGTTCTCGTTTGAGTTTGGGTAATTTATCGATTGAACCTACTTCCAAACTTCCAACTTAAGTGTTTGATGTTACAAATTGTGATGTATTGTAGGTTCGAAAGGAGATTTTGTTTGAGAGGTTGTTGGTTGTGTGGTTTCGTTGGTTGCTAATTCAGGTAAGTGACCTTACTACTAAGAGGCTTATGCTAGGTTGGGAATTGTGTGCTGATAGCATAAGCTTCATGTGTGAACTTTTCATATGTATGTGACTCATACTATAAGATGTCGTTTACTTATGGATATATGAGCTGATTGAAGAAGATCTGTGTTGTTACGCTGTTGTACATGTATGAGGTTAATGTGCCTGAGAGGAAAAAAAAATGCCTCATGTTACAGTTTTATGTTACATTTATAACATATGTTAGATTGTTGTGGGACTGCATGCATAAATATGATGTTTTCCTTTGGGAAAAATACACTTTTGGTCCCTGAGGCTTGGGTTAAGTGACACTTTAGTCCCTGAGTTTTCAAACTCAACAAAAATACCCCTGAGGTTTGAGATAAGGAGCACTTTGGTCCCTGCCGTCAAATTTTCTGTTAACTTTTAACGGTTGCTGACGTGGCACTATTATTTTAATATAAAAAATTATATATTTTATTTTTTAAATAAAAAATATTAAAAAATAAAATATTAATATTTAATTATTTTTTTTATTCTTTCTCCCTTTCCTTTCTCTCTCTTCTTCTTCTTCTTTTCCATCTTCTCCACCTTCTCCTTCCTCCTTCTTCTTCTTCCTATGTCCGGCGACCGGCGACCGGTGACCACCGCTCGCTGCCGCCGGCGACCTTTTTTTTTTTTCCTTTTCTCTTCTTTCCTCTTTTTCTCTTCTTTCTTCACTGATTTTAAAAAAATAATAGAAAAAAGAAAGGGGAGGAGACGGAGGAGGGAGGTCCCTCCTCCCTCCCTCGTTCCCTCCCCTTTTTGTTTTTTTTTTCTTAAAAAAAGCAGTGAAGAAAATGTAGGGAAGAAGAAAGAAGAGAAAAAGAGGAAAGAAGAAAAAGGAAAAAAAAAATCGCCGCCGGTCGCCAGTCGCCAGACATAGGAAGAAGAAGAAGAGGAAGGAGAAGGTGGAGAAGATGGAGAAGATGGAAAAGAAGAAGAAGATGATGAGAGAGAAAGGGAGAAAAATAAAAAAATAAAAAATATTAATATTATATATTTTTTAAATATTTTTTATTTAAAAAATAAAATAAATAATTTTTTATATTAAAATAATAGTGCCACGTCAGCAACCATTAAAAGTTAACAGGAAAATTGACGGCAGGGACCAAAGTGCTCCTTATCTCAAACCTCGGGGGTATTTTTGTTGAGTTTGAAAACTCAGGGACCAAAGTGTCACTTAACCCAAACCTCAGGGACCAAAAGTGTATTTTCCCCTTTTCCTTTTTAACCTTAAATGTTTGCATGACAATTACCTTAAAGGAAAACTTGATGTACATCTAGAGGAAAGTAAGGTTTTGATAGGCGAGACTTGCCTCCTACTAATTGGGTGCCAACTAACCGTTAGATAGGCGCAGTCTCTAGAGGATGCCTACCTTACCTTCTAGTTGGGAGAGGAATAAGAGGAAATTGGGTAATTGTTCATGCATGACCATAGAGGAAATAATCAAGAGAAAAATGTTAAGTCCCATTAAAATTGTATGGTTTACAACCACCTAGAGGAGCATGATCTATAATTGATGAATTTGCATAGCCCAATCTCAGTAACGAGGTTACTTACTGAGTATTTCCAATACTCACTCTTTCCAAAAATGTTTGTTTTCAGGTAAAGGCAAAGGCGTCAAGGCGATTGACAGAGGTGGTCGGATAGCCATGGGAGACAGTAGAAGATGA

mRNA sequence

ATGGAACTAAGTTTTTCGAGGAAAGAAGCATGGGTGTCCTTCTTTTCGAATTCCAAATTAGAGCATGTGATTTGGAAGGCACATTGGATGCCCCTAAAAGCCTTAATCTACAGATGCGGGAGCTTCCACACAGTTCCTTTAGTAGGCCCTTGGGGATGCGTCCATTATGCTCCGTTGTTGGCCTTGCGGCAAAGTTGGTTTAAACAGTTCATAACAGCAACTCATGGTCTGCATAAATTAGAATTTTCCTACAGTTGCGAGGATTCTAACTGTAACGCCCCGAATTTCAGCGTCCAGCGTAGGCCGTCACCGTCGTGTGGTTCCAGCTCTCCGTTGCGCGTCGCTTGTCGAAATCGTCTCGCGCGTTCCATAGCTACTGTTCGAGTTGTTGTCGCCGTCGCACGTCATTGGAGTTCAGCAGTTTTCAGCCTTAATCAGTCGTTCCCGACGTTCAAGCTTCGATACTCAGCCATTTACGCTATTGTCCAGCGAAGTGACTTTAGTTTGGGTAAGAGTTTAGCTATTCAGAGGTGTCGTCCAATAGAGGTTAAGGCTAGTTTTCGAGTGGGTCTTTGTGTTGTGTACTTTATTTTGGCTAAGGACGAGGTAAGTGACCTTACTACTAAGAGGCTTATGCTAGGTTGGGAATTGTGTGCTGATAGCATAAGCTTCATGTGTGAACTTTTCATATGTAAAGGCAAAGGCGTCAAGGCGATTGACAGAGGTGGTCGGATAGCCATGGGAGACAGTAGAAGATGA

Coding sequence (CDS)

ATGGAACTAAGTTTTTCGAGGAAAGAAGCATGGGTGTCCTTCTTTTCGAATTCCAAATTAGAGCATGTGATTTGGAAGGCACATTGGATGCCCCTAAAAGCCTTAATCTACAGATGCGGGAGCTTCCACACAGTTCCTTTAGTAGGCCCTTGGGGATGCGTCCATTATGCTCCGTTGTTGGCCTTGCGGCAAAGTTGGTTTAAACAGTTCATAACAGCAACTCATGGTCTGCATAAATTAGAATTTTCCTACAGTTGCGAGGATTCTAACTGTAACGCCCCGAATTTCAGCGTCCAGCGTAGGCCGTCACCGTCGTGTGGTTCCAGCTCTCCGTTGCGCGTCGCTTGTCGAAATCGTCTCGCGCGTTCCATAGCTACTGTTCGAGTTGTTGTCGCCGTCGCACGTCATTGGAGTTCAGCAGTTTTCAGCCTTAATCAGTCGTTCCCGACGTTCAAGCTTCGATACTCAGCCATTTACGCTATTGTCCAGCGAAGTGACTTTAGTTTGGGTAAGAGTTTAGCTATTCAGAGGTGTCGTCCAATAGAGGTTAAGGCTAGTTTTCGAGTGGGTCTTTGTGTTGTGTACTTTATTTTGGCTAAGGACGAGGTAAGTGACCTTACTACTAAGAGGCTTATGCTAGGTTGGGAATTGTGTGCTGATAGCATAAGCTTCATGTGTGAACTTTTCATATGTAAAGGCAAAGGCGTCAAGGCGATTGACAGAGGTGGTCGGATAGCCATGGGAGACAGTAGAAGATGA

Protein sequence

MELSFSRKEAWVSFFSNSKLEHVIWKAHWMPLKALIYRCGSFHTVPLVGPWGCVHYAPLLALRQSWFKQFITATHGLHKLEFSYSCEDSNCNAPNFSVQRRPSPSCGSSSPLRVACRNRLARSIATVRVVVAVARHWSSAVFSLNQSFPTFKLRYSAIYAIVQRSDFSLGKSLAIQRCRPIEVKASFRVGLCVVYFILAKDEVSDLTTKRLMLGWELCADSISFMCELFICKGKGVKAIDRGGRIAMGDSRR

Homology

[Close]

BLAST of Lag0006000 vs. NCBI nr
Match: TYK23955.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 3.3e-26
Identity = 56/85 (65.88%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 4   SFSRKEAWVSFFSNSKLEHVIWKAHWMPLKALIYRCGSFHTVPLVGPWGCVHYAPLLALR 63
           S+ RKEAW+SFF+    E+VIWKA WMPLKA+IYRCG FH+VPL+GPWG V+Y PLL LR
Sbjct: 49  SYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYLPLLVLR 108

Query: 64  QSWFKQFITATHGLHKLEFSYSCED 89
           Q W KQFI  TH L + +FSY  ED
Sbjct: 109 QVWLKQFIPPTHNLQESDFSYDLED 133

[Close]

BLAST of Lag0006000 vs. NCBI nr
Match: KAA0036941.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 9.6e-26
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 4   SFSRKEAWVSFFSNSKLEHVIWKAHWMPLKALIYRCGSFHTVPLVGPWGCVHYAPLLALR 63
           ++ RKEAW+SFF+    E+VIWKA WMPLKA+IYRCG FH+VPL+GPWG V+Y PLL LR
Sbjct: 272 TYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLR 331

Query: 64  QSWFKQFITATHGLHKLEFSYSCED 89
           Q W KQFI  TH L + +FSY  ED
Sbjct: 332 QVWLKQFIPPTHNLQESDFSYDPED 356

[Close]

BLAST of Lag0006000 vs. NCBI nr
Match: TYK16558.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 9.6e-26
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 4  SFSRKEAWVSFFSNSKLEHVIWKAHWMPLKALIYRCGSFHTVPLVGPWGCVHYAPLLALR 63
          ++ RKEAW+SFF+    E+VIWKA WMPLKA+IYRCG FH+VPL+GPWG V+Y PLL LR
Sbjct: 7  TYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLR 66

Query: 64 QSWFKQFITATHGLHKLEFSYSCED 89
          Q W KQFI  TH L + +FSY  ED
Sbjct: 67 QVWLKQFIPPTHNLQESDFSYDPED 91

[Close]

BLAST of Lag0006000 vs. NCBI nr
Match: KAA0044912.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 9.6e-26
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 4   SFSRKEAWVSFFSNSKLEHVIWKAHWMPLKALIYRCGSFHTVPLVGPWGCVHYAPLLALR 63
           ++ RKEAW+SFF+    E+VIWKA WMPLKA+IYRCG FH+VPL+GPWG V+Y PLL LR
Sbjct: 116 TYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLR 175

Query: 64  QSWFKQFITATHGLHKLEFSYSCED 89
           Q W KQFI  TH L + +FSY  ED
Sbjct: 176 QVWLKQFIPPTHNLQESDFSYDPED 200

[Close]

BLAST of Lag0006000 vs. NCBI nr
Match: KAA0046902.1 (girdin-like [Cucumis melo var. makuwa] >TYK03246.1 girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-25
Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 4   SFSRKEAWVSFFSNSKLEHVIWKAHWMPLKALIYRCGSFHTVPLVGPWGCVHYAPLLALR 63
           ++ RKEAW+SFF+    E+VIWKA WMPLKA+IYRCG FH+VPL+GPWG V+Y PLL LR
Sbjct: 83  TYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLR 142

Query: 64  QSWFKQFITATHGLHKLEFSY---SCEDSNCNA 94
           Q W KQFI  TH L + +FSY    C+   C A
Sbjct: 143 QVWLKQFIPPTHNLQESDFSYDPEDCQGKKCQA 175

[Close]

BLAST of Lag0006000 vs. ExPASy TrEMBL
Match: A0A5D3DK34 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00110 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-26
Identity = 56/85 (65.88%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 4   SFSRKEAWVSFFSNSKLEHVIWKAHWMPLKALIYRCGSFHTVPLVGPWGCVHYAPLLALR 63
           S+ RKEAW+SFF+    E+VIWKA WMPLKA+IYRCG FH+VPL+GPWG V+Y PLL LR
Sbjct: 49  SYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYLPLLVLR 108

Query: 64  QSWFKQFITATHGLHKLEFSYSCED 89
           Q W KQFI  TH L + +FSY  ED
Sbjct: 109 QVWLKQFIPPTHNLQESDFSYDLED 133

[Close]

BLAST of Lag0006000 vs. ExPASy TrEMBL
Match: A0A5A7T5S7 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.7e-26
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 4   SFSRKEAWVSFFSNSKLEHVIWKAHWMPLKALIYRCGSFHTVPLVGPWGCVHYAPLLALR 63
           ++ RKEAW+SFF+    E+VIWKA WMPLKA+IYRCG FH+VPL+GPWG V+Y PLL LR
Sbjct: 272 TYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLR 331

Query: 64  QSWFKQFITATHGLHKLEFSYSCED 89
           Q W KQFI  TH L + +FSY  ED
Sbjct: 332 QVWLKQFIPPTHNLQESDFSYDPED 356

[Close]

BLAST of Lag0006000 vs. ExPASy TrEMBL
Match: A0A5D3CZ50 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003770 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.7e-26
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 4  SFSRKEAWVSFFSNSKLEHVIWKAHWMPLKALIYRCGSFHTVPLVGPWGCVHYAPLLALR 63
          ++ RKEAW+SFF+    E+VIWKA WMPLKA+IYRCG FH+VPL+GPWG V+Y PLL LR
Sbjct: 7  TYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLR 66

Query: 64 QSWFKQFITATHGLHKLEFSYSCED 89
          Q W KQFI  TH L + +FSY  ED
Sbjct: 67 QVWLKQFIPPTHNLQESDFSYDPED 91

[Close]

BLAST of Lag0006000 vs. ExPASy TrEMBL
Match: A0A5A7TNJ1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002070 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.7e-26
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 4   SFSRKEAWVSFFSNSKLEHVIWKAHWMPLKALIYRCGSFHTVPLVGPWGCVHYAPLLALR 63
           ++ RKEAW+SFF+    E+VIWKA WMPLKA+IYRCG FH+VPL+GPWG V+Y PLL LR
Sbjct: 116 TYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLR 175

Query: 64  QSWFKQFITATHGLHKLEFSYSCED 89
           Q W KQFI  TH L + +FSY  ED
Sbjct: 176 QVWLKQFIPPTHNLQESDFSYDPED 200

[Close]

BLAST of Lag0006000 vs. ExPASy TrEMBL
Match: A0A5D3BYI1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00630 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.1e-26
Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 4   SFSRKEAWVSFFSNSKLEHVIWKAHWMPLKALIYRCGSFHTVPLVGPWGCVHYAPLLALR 63
           ++ RKEAW+SFF+    E+VIWKA WMPLKA+IYRCG FH+VPL+GPWG V+Y PLL LR
Sbjct: 83  TYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLR 142

Query: 64  QSWFKQFITATHGLHKLEFSY---SCEDSNCNA 94
           Q W KQFI  TH L + +FSY    C+   C A
Sbjct: 143 QVWLKQFIPPTHNLQESDFSYDPEDCQGKKCQA 175

The following BLAST results are available for this feature:

BLAST of Lag0006000 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23955.1	3.3e-26	65.88	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0036941.1	9.6e-26	64.71	girdin-like [Cucumis melo var. makuwa]	[more]
TYK16558.1	9.6e-26	64.71	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0044912.1	9.6e-26	64.71	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0046902.1	1.3e-25	60.22	girdin-like [Cucumis melo var. makuwa] >TYK03246.1 girdin-like [Cucumis melo var...	[more]

BLAST of Lag0006000 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0006000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DK34	1.6e-26	65.88	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00110 PE...	[more]
A0A5A7T5S7	4.7e-26	64.71	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=...	[more]
A0A5D3CZ50	4.7e-26	64.71	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003770 PE...	[more]
A0A5A7TNJ1	4.7e-26	64.71	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002070 PE...	[more]
A0A5D3BYI1	6.1e-26	60.22	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00630 PE...	[more]

BLAST of Lag0006000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48200	PROTEIN, PUTATIVE-RELATED	coord: 8..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006000.1	Lag0006000.1	mRNA