Lag0005937 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005937
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Peroxisome biogenesis protein 12
Location	chr6: 34043475 .. 34044775 (+)
RNA-Seq Expression	Lag0005937
Synteny	Lag0005937

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGTGTTGGTTGTTCAATCAATTTTTTCTTTTGGGCGGTACTGATCGATCTCGAAGTTGGCATACATGGTTGTGCTCATTATGTATCCTTTCATATGGCTGTACGTTGTTTCTTCATTGTAACATCGCCTTTTTTTTCACTGTCAAGTCCTAATGCTTAAATTCTTCTGGGTTGGTGAAAAATTTTCAGGTTTTAGCTCTAAGAAGACCATTCTTTCACAGGGTTTTAGACTATGAAGATGAATTCTTGAAACACATAGCTTATGAACTACAGGTGAATGATGGTTGTTCTCATAAAGCACATGATTTTAATTTGAAAATACTGTTCCTCTCTCTGTACCTAACTGTTATTCATTTTCTACATTTTCTTCAGATGCTTCATTTTCAGAATCCCTGTATGGCTTAAGAAGAAGAGCTGTAAATGTAAAAGTAAAAAAGGAAGATGCTCGTTCCGTCTCTAGTGATGGTATTCAACAAAGAGGGTTAGAAAAGCATCAAAAAGTTATTTTTGTTGCTTCCTTGGTATGATCTAAATCTTGTTCATTCAAAAAAGATACCGAGGAGGCAGCTATTATTCTACTGTTAACTTTTTTTGTGCTTTTGACATTTAGTTCACCTTGCTTATCTCCTTGGAAATTTGATGCTTTGTACACTTCTCTCTCTCTCTCTCTATCTATCTACATCTATCAATCTATATATATAGTGGGTTTACATGTATGTTAAATCACTACCCATTTATCTCAACTTTTTGTCATACTTCTCTCACTAGACAAGGGCATTTAGACAGTTAACACAAGATACAAAAAATTGTTGTTTGGTAGCATATTGCCCAATAAAAGTTCAGAATGGTTTTTTTTTTGTGTATAATTAAGTTTTCCTTAACATAAGTTTGAAATGAACAATTATTATTTCATGTGGATTCAAACTAGACTTCCTTGCAACACACTACGCATCTTGAATGATTAATTCAATGAATATATAATTTTCAGGCTGTATTGCCCTATTTCAAGTCAAAGTTGCACTCAATTTACAATAAGGAAAGGGAAGCCAGGCTTCAAGCAAGTTTATGGGGTGGAAGATCAAACTTCAATGGGTGTGGAACCTTGACAAGAGTCAACTACTCTTTGTTAAATCTCTTTTTGCTACCCTTTTAGAAGGTTCTTTTGTCCTTCCCCCCAGTTTTCAAAGTCCCTTTGGAAGCTTAAAGATTGCCGTCCTGGGAGGTCTCTCTACAAAATGGAGAAAGTCTCAACACAGTGTTCCTATTTTCGTTGGATTGCTGGTGATCAGAGCTTAG

mRNA sequence

ATGGTTGGTGTTGGTTGTTCAATCAATTTTTTCTTTTGGGCGGTACTGATCGATCTCGAAGTTGGCATACATGGTTGTGCTCATTATGTATCCTTTCATATGGCTGTTTTAGCTCTAAGAAGACCATTCTTTCACAGGGTTTTAGACTATGAAGATGAATTCTTGAAACACATAGCTTATGAACTACAGGTGAATGATGATGCTTCATTTTCAGAATCCCTGTATGGCTTAAGAAGAAGAGCTGTAAATGTAAAAGTAAAAAAGGAAGATGCTCGTTCCGTCTCTAGTGATGGTATTCAACAAAGAGGGTTAGAAAAGCATCAAAAAGTTATTTTTGTTGCTTCCTTGGCTGTATTGCCCTATTTCAAGTCAAAGTTGCACTCAATTTACAATAAGGAAAGGGAAGCCAGGCTTCAAGCAAGTTTATGGGGTGGAAGATCAAACTTCAATGGTTTTCAAAGTCCCTTTGGAAGCTTAAAGATTGCCGTCCTGGGAGGTCTCTCTACAAAATGGAGAAAGTCTCAACACAGTGTTCCTATTTTCGTTGGATTGCTGGTGATCAGAGCTTAG

Coding sequence (CDS)

ATGGTTGGTGTTGGTTGTTCAATCAATTTTTTCTTTTGGGCGGTACTGATCGATCTCGAAGTTGGCATACATGGTTGTGCTCATTATGTATCCTTTCATATGGCTGTTTTAGCTCTAAGAAGACCATTCTTTCACAGGGTTTTAGACTATGAAGATGAATTCTTGAAACACATAGCTTATGAACTACAGGTGAATGATGATGCTTCATTTTCAGAATCCCTGTATGGCTTAAGAAGAAGAGCTGTAAATGTAAAAGTAAAAAAGGAAGATGCTCGTTCCGTCTCTAGTGATGGTATTCAACAAAGAGGGTTAGAAAAGCATCAAAAAGTTATTTTTGTTGCTTCCTTGGCTGTATTGCCCTATTTCAAGTCAAAGTTGCACTCAATTTACAATAAGGAAAGGGAAGCCAGGCTTCAAGCAAGTTTATGGGGTGGAAGATCAAACTTCAATGGTTTTCAAAGTCCCTTTGGAAGCTTAAAGATTGCCGTCCTGGGAGGTCTCTCTACAAAATGGAGAAAGTCTCAACACAGTGTTCCTATTTTCGTTGGATTGCTGGTGATCAGAGCTTAG

Protein sequence

MVGVGCSINFFFWAVLIDLEVGIHGCAHYVSFHMAVLALRRPFFHRVLDYEDEFLKHIAYELQVNDDASFSESLYGLRRRAVNVKVKKEDARSVSSDGIQQRGLEKHQKVIFVASLAVLPYFKSKLHSIYNKEREARLQASLWGGRSNFNGFQSPFGSLKIAVLGGLSTKWRKSQHSVPIFVGLLVIRA

Homology

[Close]

BLAST of Lag0005937 vs. NCBI nr
Match: XP_038890543.1 (peroxisome biogenesis protein 12 isoform X1 [Benincasa hispida])

HSP 1 Score: 176.8 bits (447), Expect = 1.8e-40
Identity = 97/146 (66.44%), Postives = 107/146 (73.29%), Query Frame = 0


Query: 3   GVGCSINFFFWAVLIDLEVGIHGCAHYVSFHMAVLALRRPFFHRVLDYEDEFLKHIAYEL 62
           G G    FF  A    L   +      +++ + VLALRRPFFH+VLDYEDEF   +   L
Sbjct: 7   GQGTRPTFFEMAAAQQLPASLRAA---LTYSIGVLALRRPFFHKVLDYEDEFFSLLMLVL 66

Query: 63  QVND----DASFSESLYGLRRRAVNVKVKKEDARSVSSDGIQQRGLEKHQKVIFVASLAV 122
           + +     DASFSESLYGLRRRAVNVKVKKEDARSVS DGIQ RGLEKHQKV+ VA L V
Sbjct: 67  ETHSLRTTDASFSESLYGLRRRAVNVKVKKEDARSVSGDGIQHRGLEKHQKVLSVAFLVV 126

Query: 123 LPYFKSKLHSIYNKEREARLQASLWG 145
           LPYFKSKLHSIYNKEREARLQASLWG
Sbjct: 127 LPYFKSKLHSIYNKEREARLQASLWG 149

[Close]

BLAST of Lag0005937 vs. NCBI nr
Match: XP_038890544.1 (peroxisome biogenesis protein 12 isoform X2 [Benincasa hispida])

HSP 1 Score: 176.8 bits (447), Expect = 1.8e-40
Identity = 97/146 (66.44%), Postives = 107/146 (73.29%), Query Frame = 0


Query: 3   GVGCSINFFFWAVLIDLEVGIHGCAHYVSFHMAVLALRRPFFHRVLDYEDEFLKHIAYEL 62
           G G    FF  A    L   +      +++ + VLALRRPFFH+VLDYEDEF   +   L
Sbjct: 7   GQGTRPTFFEMAAAQQLPASLRAA---LTYSIGVLALRRPFFHKVLDYEDEFFSLLMLVL 66

Query: 63  QVND----DASFSESLYGLRRRAVNVKVKKEDARSVSSDGIQQRGLEKHQKVIFVASLAV 122
           + +     DASFSESLYGLRRRAVNVKVKKEDARSVS DGIQ RGLEKHQKV+ VA L V
Sbjct: 67  ETHSLRTTDASFSESLYGLRRRAVNVKVKKEDARSVSGDGIQHRGLEKHQKVLSVAFLVV 126

Query: 123 LPYFKSKLHSIYNKEREARLQASLWG 145
           LPYFKSKLHSIYNKEREARLQASLWG
Sbjct: 127 LPYFKSKLHSIYNKEREARLQASLWG 149

[Close]

BLAST of Lag0005937 vs. NCBI nr
Match: KAA0049977.1 (peroxisome biogenesis protein 12 [Cucumis melo var. makuwa] >TYK07708.1 peroxisome biogenesis protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 175.3 bits (443), Expect = 5.2e-40
Identity = 96/146 (65.75%), Postives = 107/146 (73.29%), Query Frame = 0


Query: 3   GVGCSINFFFWAVLIDLEVGIHGCAHYVSFHMAVLALRRPFFHRVLDYEDEFLKHIAYEL 62
           G G    FF  A    L   +      +++ + VLALRRPFFH+VLDYEDEF   +   L
Sbjct: 7   GQGTRPTFFEMAAAQQLPASLRAA---LTYSIGVLALRRPFFHKVLDYEDEFFSLLMLVL 66

Query: 63  QVND----DASFSESLYGLRRRAVNVKVKKEDARSVSSDGIQQRGLEKHQKVIFVASLAV 122
           + +     DASFSESLYGLRRRAVNV+VKKEDARSVS DGIQ RGLEKHQKV+ VA L V
Sbjct: 67  ETHSLRTTDASFSESLYGLRRRAVNVQVKKEDARSVSGDGIQHRGLEKHQKVLSVAFLVV 126

Query: 123 LPYFKSKLHSIYNKEREARLQASLWG 145
           LPYFKSKLHSIYNKEREARLQASLWG
Sbjct: 127 LPYFKSKLHSIYNKEREARLQASLWG 149

[Close]

BLAST of Lag0005937 vs. NCBI nr
Match: XP_008441822.1 (PREDICTED: peroxisome biogenesis protein 12 [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 5.2e-40
Identity = 96/146 (65.75%), Postives = 107/146 (73.29%), Query Frame = 0


Query: 3   GVGCSINFFFWAVLIDLEVGIHGCAHYVSFHMAVLALRRPFFHRVLDYEDEFLKHIAYEL 62
           G G    FF  A    L   +      +++ + VLALRRPFFH+VLDYEDEF   +   L
Sbjct: 7   GQGTRPTFFEMAAAQQLPASLRAA---LTYSIGVLALRRPFFHKVLDYEDEFFSLLMLVL 66

Query: 63  QVND----DASFSESLYGLRRRAVNVKVKKEDARSVSSDGIQQRGLEKHQKVIFVASLAV 122
           + +     DASFSESLYGLRRRAVNV+VKKEDARSVS DGIQ RGLEKHQKV+ VA L V
Sbjct: 67  ETHSLRTTDASFSESLYGLRRRAVNVQVKKEDARSVSGDGIQHRGLEKHQKVLSVAFLVV 126

Query: 123 LPYFKSKLHSIYNKEREARLQASLWG 145
           LPYFKSKLHSIYNKEREARLQASLWG
Sbjct: 127 LPYFKSKLHSIYNKEREARLQASLWG 149

[Close]

BLAST of Lag0005937 vs. NCBI nr
Match: XP_004152815.1 (peroxisome biogenesis protein 12 [Cucumis sativus] >KGN61284.1 hypothetical protein Csa_006476 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-39
Identity = 95/146 (65.07%), Postives = 106/146 (72.60%), Query Frame = 0


Query: 3   GVGCSINFFFWAVLIDLEVGIHGCAHYVSFHMAVLALRRPFFHRVLDYEDEFLKHIAYEL 62
           G G    FF  A    L   +      +++ + VLALRRPFFH+VLDYEDEF   +   L
Sbjct: 7   GQGTRPTFFEMAAAQQLPASLRAA---LTYSIGVLALRRPFFHKVLDYEDEFFSLLMLVL 66

Query: 63  QVND----DASFSESLYGLRRRAVNVKVKKEDARSVSSDGIQQRGLEKHQKVIFVASLAV 122
           + +     DASFSESLYGLRRRAVNV+VKKEDARSVS DGIQ RGLEKHQKV+ VA L V
Sbjct: 67  ETHSLRTTDASFSESLYGLRRRAVNVQVKKEDARSVSGDGIQHRGLEKHQKVLSVAFLVV 126

Query: 123 LPYFKSKLHSIYNKEREARLQASLWG 145
           LPYFKSKLHSIYNKERE RLQASLWG
Sbjct: 127 LPYFKSKLHSIYNKEREVRLQASLWG 149

[Close]

BLAST of Lag0005937 vs. ExPASy Swiss-Prot
Match: Q9M841 (Peroxisome biogenesis protein 12 OS=Arabidopsis thaliana OX=3702 GN=PEX12 PE=1 SV=2)

HSP 1 Score: 134.4 bits (337), Expect = 1.3e-30
Identity = 79/187 (42.25%), Postives = 110/187 (58.82%), Query Frame = 0


Query: 3   GVGCSINFFFWAVLIDLEVGIHGCAHYVSFHMAVLALRRPFFHRVLDYEDEFLKHIAYEL 62
           G G    FF  A    L   +      +++ + V ALRR F H++LDYEDEF   +   L
Sbjct: 7   GEGTRPTFFEMAAAQQLPASLRAA---LTYSLGVFALRRSFLHKILDYEDEFFAALMLIL 66

Query: 63  QVND----DASFSESLYGLRRRAVNVKVKKEDARSVSSDGIQQRGLEKHQKVIFVASLAV 122
           + +     D SF+ESLYGLRR++  ++++K+ AR  SS+ +Q  GLEK Q+++ V  L V
Sbjct: 67  EGHSLRTTDGSFAESLYGLRRKSARLRLRKDSARKDSSEEVQHSGLEKRQRILSVVFLVV 126

Query: 123 LPYFKSKLHSIYNKEREARLQASLWGGRSN-------FNGFQS-----PFGSLKIAVLGG 174
           LPYFKSKLH+IYNKEREARL+ SLWG           F G  S     P G+ +++V   
Sbjct: 127 LPYFKSKLHAIYNKEREARLRESLWGAEDQGFDEADFFTGDDSIVSREPSGNEELSVRVQ 186

The following BLAST results are available for this feature:

BLAST of Lag0005937 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890543.1	1.8e-40	66.44	peroxisome biogenesis protein 12 isoform X1 [Benincasa hispida]	[more]
XP_038890544.1	1.8e-40	66.44	peroxisome biogenesis protein 12 isoform X2 [Benincasa hispida]	[more]
KAA0049977.1	5.2e-40	65.75	peroxisome biogenesis protein 12 [Cucumis melo var. makuwa] >TYK07708.1 peroxiso...	[more]
XP_008441822.1	5.2e-40	65.75	PREDICTED: peroxisome biogenesis protein 12 [Cucumis melo]	[more]
XP_004152815.1	1.5e-39	65.07	peroxisome biogenesis protein 12 [Cucumis sativus] >KGN61284.1 hypothetical prot...	[more]

BLAST of Lag0005937 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M841	1.3e-30	42.25	Peroxisome biogenesis protein 12 OS=Arabidopsis thaliana OX=3702 GN=PEX12 PE=1 S...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006845	Pex, N-terminal	PFAM	PF04757	Pex2_Pex12	coord: 60..139 e-value: 7.9E-12 score: 45.3
IPR017375	Peroxisome assembly protein 12	PANTHER	PTHR12888	PEROXISOME ASSEMBLY PROTEIN 12 PEROXIN-12	coord: 30..146
None	No IPR available	PANTHER	PTHR12888:SF3	PEROXISOME BIOGENESIS PROTEIN 12	coord: 30..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005937.1	Lag0005937.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016558	protein import into peroxisome matrix
biological_process	GO:0006513	protein monoubiquitination
biological_process	GO:0006625	protein targeting to peroxisome
cellular_component	GO:0005779	integral component of peroxisomal membrane
cellular_component	GO:1990429	peroxisomal importomer complex
molecular_function	GO:0008022	protein C-terminus binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0008270	zinc ion binding