Lag0005932 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005932
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H-like domain containing protein
Location	chr6: 33980008 .. 33982968 (-)
RNA-Seq Expression	Lag0005932
Synteny	Lag0005932

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCTGAAATCGGTGAAAGAGAAAGGACCAATCAATGTGCTCGAGGCGATGGCGTTGAGGGAAGGATTAAAATTATTATGTGATATACTTGGAAATCCGTCGACGATCGTTGTGGAATCTGATTGTATTGACCTCGTTAGCTGCTTGATCAATACTGAAGAGGATTTAACGAAATTGAAGGTTGTAGTCGAAGAGATTCTCGTATTGGCTCAAAATCTAGGAGTACTCCAATTCAAGCATGGTCCTAGATCTCAAAATGACGCGACTCATTCCATTGCCCATGTGGGTGTCGAATTCAATCGCCAGTTGTTGTTGTTGTTGTTTTTTTTTTTTTTTTTTTTTTTTTCCAATCAGGGGTCTCCTTCCACACTGGAAGGTGTTAGGTATTTTTGGCCCCTCGATATCTTGCCTTTTTTGTCCTCGCTCGTTGGAGAGGACTTAAATGTTGTGAACTGCTTCTCTTCTCGTGTTTAATGAAGTCTTTTTCCTTTTTTAACCTATTGAAAGCGTGGGAAAGGTTTACTAAATTCAAATAAAATTACATTGGAAAGGAAACCTGGTATAATGTTATTGATGAAAGTGAAAATTAAGGGTTAACTCAAACTTTTTATTAAAAAAAAGAAGGGAAAAAGTGGGGAAATTGTGGCAGATGGCTAGAAAAAAAAAGCTCATTTGTTTTATGGCTAAAATAGTTTCGTATTTGAAGGGATGGCTAACATGAATCAAGGAACAACCAACCGATCTATTTTTCCCATTTTACCCCTGGTAAATACTGTATACACAGATGCCGTTTTCAACTGCCGTTATACATCGAGATTCATTTTTCAAATTTCATTGGATGCACGCCAATTTGGTCTCCAACCGAATTCCATGGACTCCGTTTTTTTCTCCCTCCCCAACAATCAAAAAGGATTTTCCTATATTTTTGTTTTCTTCACCGTCTCAATCGAAAAATCTTAAAGTCACGTGGATTTTCCTCAATATATGTTAAAAAAAAACTATAATTTTATCCTATATTTTCTCGGTCCCAACAATTTTCAACTTTTGCTACATTTTCACTCGTCTCTTTACAATGGAACATTCAATCTTTGCCTGAATGTTGCATTTCTTTATTTATAGAATTCAAATTTCATCTCCACTGTCTTTGCACGATAGAGTTTAGGAGAGAAAAATTCCTATAGTATTTTCAAGTGCAACGAAGTAGTAGCCAGTCATGACTCAACCCTTCCTCATCTCACTGAATTCGTCACAATCCTTATTAGGCTTGATGCTTGAAATTTTTTTCATAGATCTCCCTCTTCAATAATGGTCATGACAAGTTTCAAATTATAAGTTTTTTTTGATAACAGAGATCTTGTCAGGATGCTCGTTGGGGTATGTAACATGATGTACCATGATTGTTGCCTTGTCGTATATGCTAAAAGTGTGGATACTAGTATCCATAGGGATGGTGCAAGTCTGAATTCAATGGAAAACACAAACAAACAGATGAAGGATTTCATGTAAGTGTACATATAAATACATTACAACGATTTTGTTGTCGATGTGGATGTTGAGCCTGTAGATACCAATATACACAGAGGCAGTGTTGGACCAAATCCACTAAGGAATGCAAATTGGAGAAGGATGATGTTTGTTTCCTTAATTCAGTTGTAAGTGATGTTGATTGCAGGGATAAAAGCCCTTGCGCAGCGAAAACTTACAGAACCTTTACTCAGTTTTTAATTTGGAATAAAATACCAATACGTTTGGCAAAATAATAAAAATTACAGCAGTAAAATCAAAATAAAACTACTGAATTTTTAATAATAAAACATGCTTGACCTTATTTAGATCTAATCTAAATTGGATCCTAGAATTCAAGAATAACTTACCTTTGAAGATTTCTTGAATTGCTTCACCAAAATTCCTTGGTTCTCCGCTGGAAAAAATTGTCACGAACACCACCACGAGGTTTCACCAGTATACTCAAAGGGATACCCGTCAAGAGCTTGTGGGAACTTGAAAATTCTAAGGATTTTCTTCTTCTCTGGAGACACACACTGATTTCCCAGAAAAACCAAAAAACCACCGAGAGAGCGAGAGAGAGGGAGAGAGGCGTGAGATTGGGAGAGATATCTGCAACCACCCACTGACCACGTGTCTTTATTTAAAAAAAGAAAAAAAGATAATTTCAGATAACTGAAATATCAGTTATCTGATAACTTAATTAATTATAATTTTTAAAATCATAATTTTAAATTATAATTAATTATATTTTAATTAATCTAAATTAATTAAAATAACATTAATTTAAATCCAATTTAAATTAATATCCCTCTTATCTTATAGTTTAATTAAATCAAATTTAATTAAACTAAATCAATTAATTAATTCGAAATTAATTAATAAAAATAAAATTGAACATCACATATTCAATTACTATTTTCTCTCTCAAAACTATAGTATTAATATACATCCAATGCATATTAATTATAACCTATAGTTTTAATATAAATCAAATTCATATTTTAGTATAATATTCGAACACCTTCGAATATTCAATCCATCCTTAGAATTTTACCTCAACGCCCTAAATGAGCTACCGGTGGGACCTAATGGACCTACAGATCAGAAGCTCCAACGATATGAGATTAGTTGGTTAAACTCATTATCCAAGTTAATCAATGTTCGTTAACTGTGGTTCACTCCACTAAAGAACCACAGCTGCACTCTTCTCACTGCAGACATATTTCTGTGTCCACGGATATTGACCGTCAACAGCAAGTTAGCCCTTCACGTGTGTTCGTACCCCAGCTAGGTCAAATTACCGTTTTACCCCTGGGCTACCTCTTGGTCCTTAAGTACCAGTGCTCCTCTAATGAACAACCTGTTTGTGGTCCAACCAACAAACAGAAATCCCTCTCGTGCCATGAAGAGGGTAGGGCCCATTGTTCAAGACCCGGAGACACCACTTAA

mRNA sequence

ATGGGCCTGAAATCGGTGAAAGAGAAAGGACCAATCAATGTGCTCGAGGCGATGGCGTTGAGGGAAGGATTAAAATTATTATGTGATATACTTGGAAATCCGTCGACGATCGTTGTGGAATCTGATTGTATTGACCTCGTTAGCTGCTTGATCAATACTGAAGAGGATTTAACGAAATTGAAGGTTGTAGTCGAAGAGATTCTCGTATTGGCTCAAAATCTAGGAGTACTCCAATTCAAGCATGGTCCTAGATCTCAAAATGACGCGACTCATTCCATTGCCCATGGGTCTCCTTCCACACTGGAAGGTGTTAGAGATCTTGTCAGGATGCTCGTTGGGGTATGTAACATGATGTACCATGATTGTTGCCTTGTCGTATATGCTAAAAGTGTGGATACTAGTATCCATAGGGATGGTGCAAGTCTGAATTCAATGGAAAACACAAACAAACAGATGAAGGATTTCATACATATTTCTGTGTCCACGGATATTGACCGTCAACAGCAAGTTAGCCCTTCACGTGTGTTCGTACCCCAGCTAGGTCAAATTACCGTTTTACCCCTGGGCTACCTCTTGGTCCTTAAGTACCAGTGCTCCTCTAATGAACAACCTGTTTGTGGTCCAACCAACAAACAGAAATCCCTCTCGTGCCATGAAGAGGGTAGGGCCCATTGTTCAAGACCCGGAGACACCACTTAA

Coding sequence (CDS)

ATGGGCCTGAAATCGGTGAAAGAGAAAGGACCAATCAATGTGCTCGAGGCGATGGCGTTGAGGGAAGGATTAAAATTATTATGTGATATACTTGGAAATCCGTCGACGATCGTTGTGGAATCTGATTGTATTGACCTCGTTAGCTGCTTGATCAATACTGAAGAGGATTTAACGAAATTGAAGGTTGTAGTCGAAGAGATTCTCGTATTGGCTCAAAATCTAGGAGTACTCCAATTCAAGCATGGTCCTAGATCTCAAAATGACGCGACTCATTCCATTGCCCATGGGTCTCCTTCCACACTGGAAGGTGTTAGAGATCTTGTCAGGATGCTCGTTGGGGTATGTAACATGATGTACCATGATTGTTGCCTTGTCGTATATGCTAAAAGTGTGGATACTAGTATCCATAGGGATGGTGCAAGTCTGAATTCAATGGAAAACACAAACAAACAGATGAAGGATTTCATACATATTTCTGTGTCCACGGATATTGACCGTCAACAGCAAGTTAGCCCTTCACGTGTGTTCGTACCCCAGCTAGGTCAAATTACCGTTTTACCCCTGGGCTACCTCTTGGTCCTTAAGTACCAGTGCTCCTCTAATGAACAACCTGTTTGTGGTCCAACCAACAAACAGAAATCCCTCTCGTGCCATGAAGAGGGTAGGGCCCATTGTTCAAGACCCGGAGACACCACTTAA

Protein sequence

MGLKSVKEKGPINVLEAMALREGLKLLCDILGNPSTIVVESDCIDLVSCLINTEEDLTKLKVVVEEILVLAQNLGVLQFKHGPRSQNDATHSIAHGSPSTLEGVRDLVRMLVGVCNMMYHDCCLVVYAKSVDTSIHRDGASLNSMENTNKQMKDFIHISVSTDIDRQQQVSPSRVFVPQLGQITVLPLGYLLVLKYQCSSNEQPVCGPTNKQKSLSCHEEGRAHCSRPGDTT

Homology

[Close]

BLAST of Lag0005932 vs. NCBI nr
Match: PON88309.1 (Ribonuclease H-like domain containing protein [Trema orientale])

HSP 1 Score: 55.5 bits (132), Expect = 7.3e-04
Identity = 32/82 (39.02%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 13  NVLEAMALREGLKLLCDILGNPSTIVVESDCIDLVSCLINTEEDLTKLKVVVEEILVLAQ 72
           +V EA+AL+EGL  +  +L      V+ESDC +L+S L  + +    +  +VEEIL++A+
Sbjct: 73  SVGEALALKEGLSQV--LLRKLQPAVLESDCQELISTLQGSLQPAWNICSIVEEILLMAR 132

Query: 73  NLGVLQFKHGPRSQNDATHSIA 95
            +GV++F + PRS N   H++A
Sbjct: 133 CVGVIEFSYTPRSTNYLAHNLA 152

[Close]

BLAST of Lag0005932 vs. NCBI nr
Match: PON70489.1 (Ribonuclease H-like domain containing protein [Trema orientale])

HSP 1 Score: 55.5 bits (132), Expect = 7.3e-04
Identity = 32/82 (39.02%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 13  NVLEAMALREGLKLLCDILGNPSTIVVESDCIDLVSCLINTEEDLTKLKVVVEEILVLAQ 72
           +V EA+AL+EGL  +  +L      V+ESDC +L+S L  + +    +  +VEEIL++A+
Sbjct: 71  SVGEALALKEGLSQV--LLRKLQPAVLESDCQELISTLQGSLQPAWNICSIVEEILLMAR 130

Query: 73  NLGVLQFKHGPRSQNDATHSIA 95
            +GV++F + PRS N   H++A
Sbjct: 131 CVGVIEFSYTPRSTNYLAHNLA 150

[Close]

BLAST of Lag0005932 vs. ExPASy TrEMBL
Match: A0A2P5DB32 (Ribonuclease H-like domain containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_256450 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.5e-04
Identity = 32/82 (39.02%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 13  NVLEAMALREGLKLLCDILGNPSTIVVESDCIDLVSCLINTEEDLTKLKVVVEEILVLAQ 72
           +V EA+AL+EGL  +  +L      V+ESDC +L+S L  + +    +  +VEEIL++A+
Sbjct: 71  SVGEALALKEGLSQV--LLRKLQPAVLESDCQELISTLQGSLQPAWNICSIVEEILLMAR 130

Query: 73  NLGVLQFKHGPRSQNDATHSIA 95
            +GV++F + PRS N   H++A
Sbjct: 131 CVGVIEFSYTPRSTNYLAHNLA 150

[Close]

BLAST of Lag0005932 vs. ExPASy TrEMBL
Match: A0A2P5ERX8 (Ribonuclease H-like domain containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_158960 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.5e-04
Identity = 32/82 (39.02%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 13  NVLEAMALREGLKLLCDILGNPSTIVVESDCIDLVSCLINTEEDLTKLKVVVEEILVLAQ 72
           +V EA+AL+EGL  +  +L      V+ESDC +L+S L  + +    +  +VEEIL++A+
Sbjct: 73  SVGEALALKEGLSQV--LLRKLQPAVLESDCQELISTLQGSLQPAWNICSIVEEILLMAR 132

Query: 73  NLGVLQFKHGPRSQNDATHSIA 95
            +GV++F + PRS N   H++A
Sbjct: 133 CVGVIEFSYTPRSTNYLAHNLA 152

The following BLAST results are available for this feature:

BLAST of Lag0005932 vs. NCBI nr


Match Name	E-value	Identity	Description
PON88309.1	7.3e-04	39.02	Ribonuclease H-like domain containing protein [Trema orientale]	[more]
PON70489.1	7.3e-04	39.02	Ribonuclease H-like domain containing protein [Trema orientale]	[more]

BLAST of Lag0005932 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0005932 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5DB32	3.5e-04	39.02	Ribonuclease H-like domain containing protein OS=Trema orientale OX=63057 GN=Tor...	[more]
A0A2P5ERX8	3.5e-04	39.02	Ribonuclease H-like domain containing protein OS=Trema orientale OX=63057 GN=Tor...	[more]

BLAST of Lag0005932 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 9..95 e-value: 4.9E-9 score: 36.1
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 3..99 e-value: 4.1E-5 score: 25.5
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 12..95 e-value: 3.18345E-14 score: 65.028

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005932.1	Lag0005932.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity