Lag0005923 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005923
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionWD repeat-containing protein 91-like protein
Locationchr6: 33768551 .. 33769339 (-)
RNA-Seq ExpressionLag0005923
SyntenyLag0005923
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTCTTTGGTATCTTTCCCGCTTCTTCCTTCTTCAAGTGCAAGGATTGGTGGATCATTTTGGCTTTAAGTCTTTTGTGTACCTCTGTCTACTTTTTGCTTTTCCTAAATGTTGTCACTATGTTATCTCGAACCCATTACCAACTAGACATAATCCGCAAGGAACTAACTGAAGTTTGCCATCAAATTTTGGTAGCCCAAAACCAAGACAATGGGGGTACATCAATGGAAGCTAGAGAATGTACCGATGGATTTGAATTGAGTTTCCATGTGAAGATGCTCATGCTTGATCATTTTAGAATTGTTGGGAGGGAAGTTTATGTCTGCTTCACTGTCTGTGCCCTGCTTGCTCTTATTGCTATTGAATTATATGCTTGCAACTACTTGTTGTGCAACTAAAATGGACATCTTAATGAAAAACATAAACACAGAACACAAGAACATAAGCTTAAGCACCTTGGGAAAACATATCGAGAGAGCTAGTTATTTGGTCTCGTTTTGACTTTCTTGTATTCTTTTGTTTTTATCTTAATGAAAGTTTGGTTTCTTGATGAAGAATCCATGACAAGTAAAGATTGTTGTTGCATCAATGGCACTTCATAATTTTATAAGAACTCATTCTACAACGACTTTGAGTTCAAGCCTTACGATGACGATGAAGATTTGCTCCCTTCAAGTGATGAAAGAAACAAGTTGAGTGTTATCGAGGAAAGTGAAACTTCTCATCATGGAAGGGAGATGGAAGCGGAGCGGGAGAAAATTGCAGAACTTCTTATGTCACGATGA

mRNA sequence

ATGTTCTTCTTTGGTATCTTTCCCGCTTCTTCCTTCTTCAAGTGCAAGGATTGGTGGATCATTTTGGCTTTAAGTCTTTTGTGTACCTCTGTCTACTTTTTGCTTTTCCTAAATGTTGTCACTATGTTATCTCGAACCCATTACCAACTAGACATAATCCGCAAGGAACTAACTGAAGTTTGCCATCAAATTTTGGTAGCCCAAAACCAAGACAATGGGGGTACATCAATGGAAGCTAGAGAATGTACCGATGGATTTGAATTGAGTTTCCATGTGAAGATGCTCATGCTTGATCATTTTAGAATTGTTGGGAGGGAAGTTTATGTCTGCTTCACTAACTCATTCTACAACGACTTTGAGTTCAAGCCTTACGATGACGATGAAGATTTGCTCCCTTCAAGTGATGAAAGAAACAAGTTGAGTGTTATCGAGGAAAGTGAAACTTCTCATCATGGAAGGGAGATGGAAGCGGAGCGGGAGAAAATTGCAGAACTTCTTATGTCACGATGA

Coding sequence (CDS)

ATGTTCTTCTTTGGTATCTTTCCCGCTTCTTCCTTCTTCAAGTGCAAGGATTGGTGGATCATTTTGGCTTTAAGTCTTTTGTGTACCTCTGTCTACTTTTTGCTTTTCCTAAATGTTGTCACTATGTTATCTCGAACCCATTACCAACTAGACATAATCCGCAAGGAACTAACTGAAGTTTGCCATCAAATTTTGGTAGCCCAAAACCAAGACAATGGGGGTACATCAATGGAAGCTAGAGAATGTACCGATGGATTTGAATTGAGTTTCCATGTGAAGATGCTCATGCTTGATCATTTTAGAATTGTTGGGAGGGAAGTTTATGTCTGCTTCACTAACTCATTCTACAACGACTTTGAGTTCAAGCCTTACGATGACGATGAAGATTTGCTCCCTTCAAGTGATGAAAGAAACAAGTTGAGTGTTATCGAGGAAAGTGAAACTTCTCATCATGGAAGGGAGATGGAAGCGGAGCGGGAGAAAATTGCAGAACTTCTTATGTCACGATGA

Protein sequence

MFFFGIFPASSFFKCKDWWIILALSLLCTSVYFLLFLNVVTMLSRTHYQLDIIRKELTEVCHQILVAQNQDNGGTSMEARECTDGFELSFHVKMLMLDHFRIVGREVYVCFTNSFYNDFEFKPYDDDEDLLPSSDERNKLSVIEESETSHHGREMEAEREKIAELLMSR
Homology
BLAST of Lag0005923 vs. NCBI nr
Match: XP_022157182.1 (uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncharacterized protein LOC111023958 [Momordica charantia])

HSP 1 Score: 151.0 bits (380), Expect = 9.3e-33
Identity = 77/114 (67.54%), Postives = 89/114 (78.07%), Query Frame = 0

Query: 1   MFFFGIFPASSFFKCKDWWIILALSLLCTSVYFLLFLNVVTMLSRTHYQLDIIRKELTEV 60
           +FFFGI   SS F CKDWW+ILALSLLC+ +YFLLFL+ V ML RT YQLDII KEL E+
Sbjct: 44  LFFFGISQTSSSFNCKDWWVILALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKEL 103

Query: 61  CHQILVAQNQDNGGTSMEARECTDGFELSFHVKMLMLDHFRIVGREVYVCFTNS 115
             QILV++NQD+ G SME  E + GFE  FH KMLMLDHFRIVGR+VY+ FT S
Sbjct: 104 FQQILVSKNQDDVGLSMETGESSGGFEFGFHEKMLMLDHFRIVGRKVYIYFTVS 157

BLAST of Lag0005923 vs. NCBI nr
Match: KAA0042579.1 (WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK05983.1 WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 5.1e-31
Identity = 77/113 (68.14%), Postives = 89/113 (78.76%), Query Frame = 0

Query: 1   MFFFGIFPASSFFKCKDWWIILALSLLCTSVYFLLFLNVVTMLSRTHYQLDIIRKELTEV 60
           +FFFG+   S  FKCKDWW+ILAL+L  T  YFLLF++ V MLSRTH QLDIIRKEL E+
Sbjct: 88  LFFFGV---SFSFKCKDWWVILALTLFYTFFYFLLFMDAVIMLSRTHDQLDIIRKELAEI 147

Query: 61  CHQILVAQNQDNGGTSMEARECTDGFELSFHVKMLMLDHFRIV--GREVYVCF 112
           C QILVAQNQDN G SMEA E +DGFELSFH +M MLD FR+V  GR+VY+ F
Sbjct: 148 CQQILVAQNQDNVGLSMEAGEDSDGFELSFHERMFMLDQFRVVETGRKVYIYF 197

BLAST of Lag0005923 vs. NCBI nr
Match: XP_022157176.1 (uncharacterized protein LOC111023953 isoform X2 [Momordica charantia])

HSP 1 Score: 136.3 bits (342), Expect = 2.4e-28
Identity = 71/112 (63.39%), Postives = 85/112 (75.89%), Query Frame = 0

Query: 1   MFFFGIFPASSFFKCKDWWIILALSLLCTSVYFLLFLNVVTMLSRTHYQLDIIRKELTEV 60
           +FFFGI   SS  KC DWW+IL+LSLLC+ VYFLLFL+  T L +T  QLD+I KEL EV
Sbjct: 44  LFFFGISQTSS-SKCHDWWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEV 103

Query: 61  CHQILVAQNQDNGGTSMEARECTDGFELSFHVKMLMLDHFRIVGREVYVCFT 113
           C QILVAQNQD+   +ME  + +DGFE  FH KML+LDHFR VGR+VY+ FT
Sbjct: 104 CQQILVAQNQDDVDLAMEGGDFSDGFEFGFHEKMLVLDHFRFVGRKVYIYFT 154

BLAST of Lag0005923 vs. NCBI nr
Match: KAE8647812.1 (hypothetical protein Csa_000331 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 6.9e-28
Identity = 71/113 (62.83%), Postives = 84/113 (74.34%), Query Frame = 0

Query: 1   MFFFGIFPASSFFKCKDWWIILALSLLCTSVYFLLFLNVVTMLSRTHYQLDIIRKELTEV 60
           +FFFG    S  FKCKDWW++L+L+LL T +Y LLF++ V MLSRTH QL IIRKELTE+
Sbjct: 45  LFFFGF---SFSFKCKDWWVVLSLTLLSTFLYLLLFMDAVVMLSRTHDQLGIIRKELTEI 104

Query: 61  CHQILVAQNQDNGGTSMEARECTDGFELSFHVKMLMLDHFRIV--GREVYVCF 112
           C QILVAQNQD    SME  EC DGFELSFH +M MLD F +V  GR+ Y+ F
Sbjct: 105 CQQILVAQNQDTVDLSMEGGECCDGFELSFHERMFMLDQFSVVENGRKGYIYF 154

BLAST of Lag0005923 vs. NCBI nr
Match: KAA0042577.1 (WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK05981.1 WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-25
Identity = 70/120 (58.33%), Postives = 84/120 (70.00%), Query Frame = 0

Query: 1   MFFFGIFPASSFFKCKDWWIILALSLLCTSVYFLLFLNVVTMLSRTHYQLDIIRKELTEV 60
           +  FG    S  FKCKDWW+ILAL+L CT VYF L L+ VTML RT Y+LDIIRKEL E+
Sbjct: 43  LLIFGFTQTSLPFKCKDWWVILALTLSCTLVYFSLLLDAVTMLCRTEYELDIIRKELIEI 102

Query: 61  CHQILVAQNQ----DNGGTSMEARECTDGFE--LSFHVKMLMLDHFRIVGREVYVCFTNS 115
           C +ILV+QNQ    D    +MEA E +DGF+    FH KMLMLDHFR V R+V++ FT S
Sbjct: 103 CQRILVSQNQRDLVDLTQLTMEAEESSDGFDFGFGFHQKMLMLDHFRTVRRKVHIYFTVS 162

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157182.19.3e-3367.54uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncha... [more]
KAA0042579.15.1e-3168.14WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK0598... [more]
XP_022157176.12.4e-2863.39uncharacterized protein LOC111023953 isoform X2 [Momordica charantia][more]
KAE8647812.16.9e-2862.83hypothetical protein Csa_000331 [Cucumis sativus][more]
KAA0042577.11.1e-2558.33WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK0598... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..160
NoneNo IPR availablePANTHERPTHR33287:SF8SUBFAMILY NOT NAMEDcoord: 2..112
NoneNo IPR availablePANTHERPTHR33287OS03G0453550 PROTEINcoord: 2..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005923.1Lag0005923.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane