Lag0005922 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005922
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	lipid phosphate phosphatase delta
Location	chr6: 33729284 .. 33730201 (-)
RNA-Seq Expression	Lag0005922
Synteny	Lag0005922

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGCGCAGCAGTGTGGCAAACGGTTGCTTTATGCGGTTTCCTCTCATGGGTTGGTTTAGCTTCCTACATTAACATAACCCAGAAGCTCAGATCCTTACTGCAACCATGGGCGGCTCGACATGTGTCACAGGCGCTCCTCTCATCCTCCGAATCCAGGTTTGGCGATTATCCAAAACCGAGTTTTATGTTTCTGTTTATGTTTTGGATTCATTGTGTAAGGTATTATTGTGTTTTGCAGAAATATCAGAATTCGTTCTTGGATGCCCTGTTTTCTGCCTTGTCTTGCATTGTTTCTGTGCCTTTCTACACCGCTTTTCTTCCTCTGCTATTCTGGGTATGCTTTAGATCTCTCTCTGTAATTTTTATCCCTCGGTTATTCCATGGGCTAACTTTTTGAGTGAAAATGTAGAGTGGCCATGGAAAATTGGCTCGGCAAATGACCCTTTTGATGGCTTTCTGTGATTACTTGGGGAATTGCCTTAAGGTAACTGGTCTTTCCCTTTATTTAATTTTTCATGAATTCAAGCTTCTTCTCCTCTTTCATCCAACATGTGGAGTTTTCTGTATTTTCTAGGATGTGGTATCAGCTCCTAGACCCAGTTGCCCACCTGTTAGGAGAATAACTGCCACCAAAGATGAGGAAGAAAATGCCATGGAATATGGATTGCCTTCTTCTCACACGCTAAATACAGTTTGTTTATCTGGGTACGTGGTTCCTGTCCTCCTACATTATACATTGGCTTGCTATTTCCTTATGTTGTCATATTGCTTTGGGGGGCATTTTTTCTCCTCCTCTCAGGGTGTGATTTAGCAAAAATCTTTGTTTATGAAGGTTATGAGACTCGAGCTTGACTCAGATTTTGACATGGGTGATACTGATGCTTATGGTGACTTGCTGCCTTTTGAGCTCTAG

mRNA sequence

ATGGAAAGCGCAGCAGTGTGGCAAACGGTTGCTTTATGCGGTTTCCTCTCATGGGTTGGTTTAGCTTCCTACATTAACATAACCCAGAAGCTCAGATCCTTACTGCAACCATGGGCGGCTCGACATGTGTCACAGGCGCTCCTCTCATCCTCCGAATCCAGGTATTATTGTGTTTTGCAGAAATATCAGAATTCGTTCTTGGATGCCCTGTTTTCTGCCTTGTCTTGCATTGTTTCTGTGCCTTTCTACACCGCTTTTCTTCCTCTGCTATTCTGGAGTGGCCATGGAAAATTGGCTCGGCAAATGACCCTTTTGATGGCTTTCTGTGATTACTTGGGGAATTGCCTTAAGGATGTGGTATCAGCTCCTAGACCCAGTTGCCCACCTGTTAGGAGAATAACTGCCACCAAAGATGAGGAAGAAAATGCCATGGAATATGGATTGCCTTCTTCTCACACGCTAAATACAGTTATGAGACTCGAGCTTGACTCAGATTTTGACATGGGTGATACTGATGCTTATGGTGACTTGCTGCCTTTTGAGCTCTAG

Coding sequence (CDS)

ATGGAAAGCGCAGCAGTGTGGCAAACGGTTGCTTTATGCGGTTTCCTCTCATGGGTTGGTTTAGCTTCCTACATTAACATAACCCAGAAGCTCAGATCCTTACTGCAACCATGGGCGGCTCGACATGTGTCACAGGCGCTCCTCTCATCCTCCGAATCCAGGTATTATTGTGTTTTGCAGAAATATCAGAATTCGTTCTTGGATGCCCTGTTTTCTGCCTTGTCTTGCATTGTTTCTGTGCCTTTCTACACCGCTTTTCTTCCTCTGCTATTCTGGAGTGGCCATGGAAAATTGGCTCGGCAAATGACCCTTTTGATGGCTTTCTGTGATTACTTGGGGAATTGCCTTAAGGATGTGGTATCAGCTCCTAGACCCAGTTGCCCACCTGTTAGGAGAATAACTGCCACCAAAGATGAGGAAGAAAATGCCATGGAATATGGATTGCCTTCTTCTCACACGCTAAATACAGTTATGAGACTCGAGCTTGACTCAGATTTTGACATGGGTGATACTGATGCTTATGGTGACTTGCTGCCTTTTGAGCTCTAG

Protein sequence

MESAAVWQTVALCGFLSWVGLASYINITQKLRSLLQPWAARHVSQALLSSSESRYYCVLQKYQNSFLDALFSALSCIVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNCLKDVVSAPRPSCPPVRRITATKDEEENAMEYGLPSSHTLNTVMRLELDSDFDMGDTDAYGDLLPFEL

Homology

[Close]

BLAST of Lag0005922 vs. NCBI nr
Match: XP_038883314.1 (lipid phosphate phosphatase delta [Benincasa hispida])

HSP 1 Score: 268.1 bits (684), Expect = 5.6e-68
Identity = 133/157 (84.71%), Postives = 139/157 (88.54%), Query Frame = 0


Query: 1   MESAAVWQTVALCGFLSWVGLASYINITQKLRSLLQPWAARHVSQALLSSSESRYYCVLQ 60
           ME+ AVWQTVALCGFLSW+GLASYINITQKLRSLLQPW ARHV + +           +Q
Sbjct: 1   MENVAVWQTVALCGFLSWIGLASYINITQKLRSLLQPWVARHVVKGV------PLILRIQ 60

Query: 61  KYQNSFLDALFSALSCIVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNCLKDVV 120
           KYQNSF DALFS LSCIVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGN +KDVV
Sbjct: 61  KYQNSFFDALFSGLSCIVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNSIKDVV 120

Query: 121 SAPRPSCPPVRRITATKDEEENAMEYGLPSSHTLNTV 158
           SAPRPSCPPVRRITATKDEEENAMEYGLPSSHTLNTV
Sbjct: 121 SAPRPSCPPVRRITATKDEEENAMEYGLPSSHTLNTV 151

[Close]

BLAST of Lag0005922 vs. NCBI nr
Match: XP_022156045.1 (lipid phosphate phosphatase delta [Momordica charantia])

HSP 1 Score: 264.2 bits (674), Expect = 8.1e-67
Identity = 132/156 (84.62%), Postives = 136/156 (87.18%), Query Frame = 0


Query: 1   MESAAVWQTVALCGFLSWVGLASYINITQKLRSLLQPWAARHVSQALLSSSESRYYCVLQ 60
           MES A WQ VAL GFLSW+GLASYINITQKLRSLLQPWAARHV         +     +Q
Sbjct: 1   MESVAAWQAVALSGFLSWIGLASYINITQKLRSLLQPWAARHVVNG------APLVLRIQ 60

Query: 61  KYQNSFLDALFSALSCIVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNCLKDVV 120
           KYQN FLDALFS LSCIVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNC+KDVV
Sbjct: 61  KYQNWFLDALFSGLSCIVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNCIKDVV 120

Query: 121 SAPRPSCPPVRRITATKDEEENAMEYGLPSSHTLNT 157
           SAPRPSCPPVRRITATKDEEENAMEYGLPSSHTLNT
Sbjct: 121 SAPRPSCPPVRRITATKDEEENAMEYGLPSSHTLNT 150

[Close]

BLAST of Lag0005922 vs. NCBI nr
Match: XP_022966358.1 (lipid phosphate phosphatase delta-like [Cucurbita maxima])

HSP 1 Score: 263.5 bits (672), Expect = 1.4e-66
Identity = 130/157 (82.80%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 1   MESAAVWQTVALCGFLSWVGLASYINITQKLRSLLQPWAARHVSQALLSSSESRYYCVLQ 60
           MES AVWQ+VALCGF SW+  ASYINIT K+RSLLQPWAARHV       + +     +Q
Sbjct: 1   MESVAVWQSVALCGFFSWIAFASYINITHKVRSLLQPWAARHV------VAGAPLILRIQ 60

Query: 61  KYQNSFLDALFSALSCIVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNCLKDVV 120
           KYQNSF+DALFS LSCIVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNCLKDVV
Sbjct: 61  KYQNSFMDALFSGLSCIVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNCLKDVV 120

Query: 121 SAPRPSCPPVRRITATKDEEENAMEYGLPSSHTLNTV 158
           SAPRPSCPPVRRI ATKDEEENAMEYGLPSSHTLNTV
Sbjct: 121 SAPRPSCPPVRRIIATKDEEENAMEYGLPSSHTLNTV 151

[Close]

BLAST of Lag0005922 vs. NCBI nr
Match: XP_023517530.1 (lipid phosphate phosphatase delta-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.0 bits (663), Expect = 1.5e-65
Identity = 128/157 (81.53%), Postives = 135/157 (85.99%), Query Frame = 0


Query: 1   MESAAVWQTVALCGFLSWVGLASYINITQKLRSLLQPWAARHVSQALLSSSESRYYCVLQ 60
           MES AVWQ+VALCGF SW+  ASYINIT K+RSLLQPWAA HV       + +     +Q
Sbjct: 1   MESVAVWQSVALCGFFSWIAFASYINITHKVRSLLQPWAAHHV------VAGAPLILRIQ 60

Query: 61  KYQNSFLDALFSALSCIVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNCLKDVV 120
           KYQNSF+DALFS LSC VSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNCLKDVV
Sbjct: 61  KYQNSFMDALFSGLSCFVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNCLKDVV 120

Query: 121 SAPRPSCPPVRRITATKDEEENAMEYGLPSSHTLNTV 158
           SAPRPSCPPVRRI ATKDEEENAMEYGLPSSHTLNTV
Sbjct: 121 SAPRPSCPPVRRIIATKDEEENAMEYGLPSSHTLNTV 151

[Close]

BLAST of Lag0005922 vs. NCBI nr
Match: TYK02412.1 (lipid phosphate phosphatase delta [Cucumis melo var. makuwa])

HSP 1 Score: 258.8 bits (660), Expect = 3.4e-65
Identity = 128/157 (81.53%), Postives = 134/157 (85.35%), Query Frame = 0


Query: 1   MESAAVWQTVALCGFLSWVGLASYINITQKLRSLLQPWAARHVSQALLSSSESRYYCVLQ 60
           MES  VWQTVALCG LSW+GLASYINIT KLRS LQPW  RHV       + +     +Q
Sbjct: 1   MESVVVWQTVALCGLLSWIGLASYINITHKLRSSLQPWVTRHV------VTGAPLILRIQ 60

Query: 61  KYQNSFLDALFSALSCIVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNCLKDVV 120
           KYQNSF DALFS LSCIVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGN +KDV+
Sbjct: 61  KYQNSFFDALFSGLSCIVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNSIKDVI 120

Query: 121 SAPRPSCPPVRRITATKDEEENAMEYGLPSSHTLNTV 158
           SAPRPSCPPVRRITATKDEEENAMEYGLPSSHTLNTV
Sbjct: 121 SAPRPSCPPVRRITATKDEEENAMEYGLPSSHTLNTV 151

[Close]

BLAST of Lag0005922 vs. ExPASy Swiss-Prot
Match: Q9M2G7 (Lipid phosphate phosphatase delta OS=Arabidopsis thaliana OX=3702 GN=LPPD PE=2 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-57
Identity = 109/157 (69.43%), Postives = 123/157 (78.34%), Query Frame = 0


Query: 1   MESAAVWQTVALCGFLSWVGLASYINITQKLRSLLQPWAARHVSQALLSSSESRYYCVLQ 60
           ME +  WQ + L G ++W+  +SY+  T K RSLLQPW AR V   +           +Q
Sbjct: 9   MEGSGTWQGLVLVGIVTWICASSYLKFTHKFRSLLQPWVARQVVGGV------PLILRIQ 68

Query: 61  KYQNSFLDALFSALSCIVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNCLKDVV 120
           K QN  LDA FS LSC+VSVPFYTAFLPLLFWSGHG+LARQMTLL+AFCDYLGNC+KDVV
Sbjct: 69  KCQNGVLDAFFSGLSCVVSVPFYTAFLPLLFWSGHGRLARQMTLLIAFCDYLGNCIKDVV 128

Query: 121 SAPRPSCPPVRRITATKDEEENAMEYGLPSSHTLNTV 158
           SAPRPSCPPVRRITATKDEE+NAMEYGLPSSHTLNTV
Sbjct: 129 SAPRPSCPPVRRITATKDEEDNAMEYGLPSSHTLNTV 159

[Close]

BLAST of Lag0005922 vs. ExPASy Swiss-Prot
Match: Q9P6N5 (Dihydrosphingosine 1-phosphate phosphatase C823.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC823.11 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-10
Identity = 36/102 (35.29%), Postives = 52/102 (50.98%), Query Frame = 0


Query: 56  YCVLQKYQNSFLDALFSALSCIVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNC 115
           Y +   ++N +LD  F   + + +  F+   LP+ FWSG       +T L A   Y   C
Sbjct: 54  YKIQSFFRNPWLDVYFMYTATLGTHVFFMLALPIFFWSGCIYYTLDITQLFAAGVYFSGC 113

Query: 116 LKDVVSAPRPSCPPVRRITATKDEEENAMEYGLPSSHTLNTV 158
           +KD    PRP  PP+ R+T + D E    EYG PS+HT N +
Sbjct: 114 IKDYFCLPRPRSPPMVRLTLSSDAE---YEYGFPSTHTTNAM 152

[Close]

BLAST of Lag0005922 vs. ExPASy Swiss-Prot
Match: Q8IWX5 (Sphingosine-1-phosphate phosphatase 2 OS=Homo sapiens OX=9606 GN=SGPP2 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.1e-08
Identity = 35/98 (35.71%), Postives = 51/98 (52.04%), Query Frame = 0


Query: 59  LQKY--QNSFLDALFSALSCIVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNCL 118
           +QKY  +N F   LF   + +    FY  FLP   W+    L+R++ ++     Y+G   
Sbjct: 76  VQKYVVKNYFYYYLFQFSAALGQEVFYITFLPFTHWNIDPYLSRRLIIIWVLVMYIGQVA 135

Query: 119 KDVVSAPRPSCPPVRRITATKDEEENAMEYGLPSSHTL 155
           KDV+  PRPS PPV      K E+    EYG+PS+H +
Sbjct: 136 KDVLKWPRPSSPPV-----VKLEKRLIAEYGMPSTHAM 168

[Close]

BLAST of Lag0005922 vs. ExPASy Swiss-Prot
Match: Q810K3 (Sphingosine-1-phosphate phosphatase 2 OS=Mus musculus OX=10090 GN=Sgpp2 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.0e-08
Identity = 31/92 (33.70%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 63  QNSFLDALFSALSCIVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNCLKDVVSA 122
           +N F   LF   + +    FY  FLP   W+    L+R++ ++     Y+G   KD++  
Sbjct: 37  KNYFYYYLFRFSAALGQEVFYITFLPFTHWNIDPNLSRRLVVIWVLVMYIGQVAKDILKW 96

Query: 123 PRPSCPPVRRITATKDEEENAMEYGLPSSHTL 155
           PRPS PPV R+     E+    EYG+PS+H +
Sbjct: 97  PRPSFPPVVRL-----EKRIIAEYGMPSTHAM 123

[Close]

BLAST of Lag0005922 vs. ExPASy Swiss-Prot
Match: Q9BX95 (Sphingosine-1-phosphate phosphatase 1 OS=Homo sapiens OX=9606 GN=SGPP1 PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 6.4e-06
Identity = 23/74 (31.08%), Postives = 39/74 (52.70%), Query Frame = 0


Query: 82  FYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNCLKDVVSAPRPSCPPVRRITATKDEEE 141
           FY  F P   W+    + R++ ++     YLG C KD++  PRP+ PPV ++    +   
Sbjct: 143 FYILFFPFWIWNLDPLVGRRLVVIWVLVMYLGQCTKDIIRWPRPASPPVVKLEVFYNS-- 202

Query: 142 NAMEYGLPSSHTLN 156
              EY +PS+H ++
Sbjct: 203 ---EYSMPSTHAMS 211

The following BLAST results are available for this feature:

BLAST of Lag0005922 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883314.1	5.6e-68	84.71	lipid phosphate phosphatase delta [Benincasa hispida]	[more]
XP_022156045.1	8.1e-67	84.62	lipid phosphate phosphatase delta [Momordica charantia]	[more]
XP_022966358.1	1.4e-66	82.80	lipid phosphate phosphatase delta-like [Cucurbita maxima]	[more]
XP_023517530.1	1.5e-65	81.53	lipid phosphate phosphatase delta-like [Cucurbita pepo subsp. pepo]	[more]
TYK02412.1	3.4e-65	81.53	lipid phosphate phosphatase delta [Cucumis melo var. makuwa]	[more]

BLAST of Lag0005922 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2G7	1.2e-57	69.43	Lipid phosphate phosphatase delta OS=Arabidopsis thaliana OX=3702 GN=LPPD PE=2 S...	[more]
Q9P6N5	2.5e-10	35.29	Dihydrosphingosine 1-phosphate phosphatase C823.11 OS=Schizosaccharomyces pombe ...	[more]
Q8IWX5	3.1e-08	35.71	Sphingosine-1-phosphate phosphatase 2 OS=Homo sapiens OX=9606 GN=SGPP2 PE=1 SV=1	[more]
Q810K3	4.0e-08	33.70	Sphingosine-1-phosphate phosphatase 2 OS=Mus musculus OX=10090 GN=Sgpp2 PE=1 SV=...	[more]
Q9BX95	6.4e-06	31.08	Sphingosine-1-phosphate phosphatase 1 OS=Homo sapiens OX=9606 GN=SGPP1 PE=1 SV=2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14969	SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE	coord: 5..158
None	No IPR available	PANTHER	PTHR14969:SF50	PHOSPHATIDIC ACID PHOSPHATASE TYPE 2/HALOPEROXIDASE-RELATED	coord: 5..158
IPR036938	Phosphatidic acid phosphatase type 2/haloperoxidase superfamily	SUPERFAMILY	48317	Acid phosphatase/Vanadium-dependent haloperoxidase	coord: 52..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005922.1	Lag0005922.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0046839	phospholipid dephosphorylation
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0006665	sphingolipid metabolic process
biological_process	GO:0090332	stomatal closure
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004601	peroxidase activity
molecular_function	GO:0008117	sphinganine-1-phosphate aldolase activity
molecular_function	GO:0042392	sphingosine-1-phosphate phosphatase activity