Lag0005899 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005899
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr6: 33449782 .. 33451022 (+)
RNA-Seq ExpressionLag0005899
SyntenyLag0005899
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAATGATAAAGCGGGGGAGATCATACCAGCTAAGATTCCTCTGATTGAAAATCAAAAAGTAGAGCATCAAAAGAATGTGAAAGAGTCAATTGAAGAGGTAGATGCTTGTGAAGTTCAGACAAAAGAAGCATCTACCCATCCTACGAAATCAAAGGCTCCAAAGGAAGAGGTGTTGTTGAATGTTCCTATATTGCGCTACATTTCTTTACCTCGGCGCAAGAAGGGGGAATCACCATTCACAAAATATTCAGGAATTTTAAAAGTTGGTGATGTAGAGGTTCTAAAAGAAAATTTCATCACACCTGTTACAACAAATACCAAGCAAGAGATTGAAGAATCAAAGATTGATCGTACAAAAGTGGCTTCGTCGGAAAAAACGAACAAAGGTTGGATTTGACCCAAATGCATACAAACTCCTAGAAAAGGCAGGATATGACTTTACAACTTATACTGAGTTTAAAAGTCTAAAAATCTTCGATGGGAGATCTGAGCTTTCTCCGACACAGAACTTTGCAGATAATCAGAAAATGGAAAGTTAAAGATGCACATCACATAACGATAGAAGAGGTGAGTGAGTCAGAAGAGAAGAAGACAAGTGATAACAAGAAAATCTCTGTCTTTGATTGCATTAAAGCTCCGACTACTCGTCTTCCAGTTCATCAGTGGTTGAAATATTCATCTTAAGAAATGGAAGGTCAGAGCAAAACTTCGGCTCCTATTCGACGTTCAGTGTTTCGTTGTTTAAGTGTGTCTACATAAAATAAAATAGATGAACCTTCGAGATCTGTGTTCAACCGGCTTCAAGCAACAAATAGCTAATGCAAGGGAAATTAGAAAAGTTTTGAAACAGAAGAATCTGATTAAATGAATGACAACAACGGATTTTCCAGTTTTGTTCCTTCACGGATGAATAGAAGACCTTTTGTTCTCATAAATACAGAAAGTCCTTTAAACGTAAAGCGACAGTTAGTCACTCTAACTGACCCTTCAAAGATGAACCAAGAGCATGAAGAAGAACAGGCCAATTGTTGTCATATTTTTTTCAAAGAAATGCCAGATATTGAAATTTCTGAAGAAGATGTTGAAAAGGCACCAACATCATTAGAGGATAGCAACCAATCAACAATAGATGAGCTCAAAGAAGTAAACATTCGTACGACAGAAGAACCACACCCGACATTCATCAATGCGTCACTTAGTGCTGAAGAGGAACATGTGTTGGGTTTTATGCCCTAA

mRNA sequence

ATGCAAAATGATAAAGCGGGGGAGATCATACCAGCTAAGATTCCTCTGATTGAAAATCAAAAAGTAGAGCATCAAAAGAATGTGAAAGAGTCAATTGAAGAGGTAGATGCTTGTGAAGTTCAGACAAAAGAAGCATCTACCCATCCTACGAAATCAAAGGCTCCAAAGGAAGAGGTGTTGTTGAATGTTCCTATATTGCGCTACATTTCTTTACCTCGGCGCAAGAAGGGGGAATCACCATTCACAAAATATTCAGGAATTTTAAAAGTTGGTGATGTAGAGGTTCTAAAAGAAAATTTCATCACACCTGTTACAACAAATACCAAGCAAGAGATTGAAGAATCAAAGATTGATCGTACAAAAGTGGCTTCGTCGGAAAAAACGAACAAAGATCTGAGCTTTCTCCGACACAGAACTTTGCAGATAATCAGAAAATGGAAAGTTAAAGATGCACATCACATAACGATAGAAGAGGTGAGTGAGTCAGAAGAGAAGAAGACAAGTGATAACAAGAAAATCTCTGTCTTTGATTGCATTAAAGCTCCGACTACTCGTCTTCCAGTTCATCAGTGTTTTGTTCCTTCACGGATGAATAGAAGACCTTTTGTTCTCATAAATACAGAAAGTCCTTTAAACGTAAAGCGACAGTTAGTCACTCTAACTGACCCTTCAAAGATGAACCAAGAGCATGAAGAAGAACAGGCCAATTGTTGTCATATTTTTTTCAAAGAAATGCCAGATATTGAAATTTCTGAAGAAGATGTTGAAAAGGCACCAACATCATTAGAGGATAGCAACCAATCAACAATAGATGAGCTCAAAGAAGTAAACATTCGTACGACAGAAGAACCACACCCGACATTCATCAATGCGTCACTTAGTGCTGAAGAGGAACATGTGTTGGGTTTTATGCCCTAA

Coding sequence (CDS)

ATGCAAAATGATAAAGCGGGGGAGATCATACCAGCTAAGATTCCTCTGATTGAAAATCAAAAAGTAGAGCATCAAAAGAATGTGAAAGAGTCAATTGAAGAGGTAGATGCTTGTGAAGTTCAGACAAAAGAAGCATCTACCCATCCTACGAAATCAAAGGCTCCAAAGGAAGAGGTGTTGTTGAATGTTCCTATATTGCGCTACATTTCTTTACCTCGGCGCAAGAAGGGGGAATCACCATTCACAAAATATTCAGGAATTTTAAAAGTTGGTGATGTAGAGGTTCTAAAAGAAAATTTCATCACACCTGTTACAACAAATACCAAGCAAGAGATTGAAGAATCAAAGATTGATCGTACAAAAGTGGCTTCGTCGGAAAAAACGAACAAAGATCTGAGCTTTCTCCGACACAGAACTTTGCAGATAATCAGAAAATGGAAAGTTAAAGATGCACATCACATAACGATAGAAGAGGTGAGTGAGTCAGAAGAGAAGAAGACAAGTGATAACAAGAAAATCTCTGTCTTTGATTGCATTAAAGCTCCGACTACTCGTCTTCCAGTTCATCAGTGTTTTGTTCCTTCACGGATGAATAGAAGACCTTTTGTTCTCATAAATACAGAAAGTCCTTTAAACGTAAAGCGACAGTTAGTCACTCTAACTGACCCTTCAAAGATGAACCAAGAGCATGAAGAAGAACAGGCCAATTGTTGTCATATTTTTTTCAAAGAAATGCCAGATATTGAAATTTCTGAAGAAGATGTTGAAAAGGCACCAACATCATTAGAGGATAGCAACCAATCAACAATAGATGAGCTCAAAGAAGTAAACATTCGTACGACAGAAGAACCACACCCGACATTCATCAATGCGTCACTTAGTGCTGAAGAGGAACATGTGTTGGGTTTTATGCCCTAA

Protein sequence

MQNDKAGEIIPAKIPLIENQKVEHQKNVKESIEEVDACEVQTKEASTHPTKSKAPKEEVLLNVPILRYISLPRRKKGESPFTKYSGILKVGDVEVLKENFITPVTTNTKQEIEESKIDRTKVASSEKTNKDLSFLRHRTLQIIRKWKVKDAHHITIEEVSESEEKKTSDNKKISVFDCIKAPTTRLPVHQCFVPSRMNRRPFVLINTESPLNVKRQLVTLTDPSKMNQEHEEEQANCCHIFFKEMPDIEISEEDVEKAPTSLEDSNQSTIDELKEVNIRTTEEPHPTFINASLSAEEEHVLGFMP
Homology
[Close]
BLAST of Lag0005899 vs. NCBI nr
Match: KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 1.1e-39
Identity = 132/370 (35.68%), Postives = 184/370 (49.73%), Query Frame = 0 

Query: 1    MQNDKAGEIIPAKIPLIENQKVEHQKNV--KESIEEVDACEVQTKEASTHPTKSKAPKEE 60
            ++ND + E++  ++PL+  +     K++  +ES +          EAST   KS    +E
Sbjct: 666  LKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFHSGKSEASTSTAKSVIVMDE 725

Query: 61   VLLNVPILRYISLPRRKKGESPFTKYSGILKVGDVEVLKENFITPVTTNTKQEIEESKI- 120
               N PILRY+ L RRKKGESPF ++   LKVGD+EVLKE+F TP+T  TKQEI+   I 
Sbjct: 726  KTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKESFTTPLTKITKQEIKIDLIE 785

Query: 121  ---------------------------------------DRTKVASSEK----------- 180
                                                   ++ K++S++K           
Sbjct: 786  ASLPQRRTKDGFDPKAYKSMAKAGYDFTTHTEFKSLKIHEQPKLSSTQKKLLREGHAIPM 845

Query: 181  TNKDLSFLRHRTLQIIRKWKVK--DAHHITIEEVSESEEKKTSDNKKISVFDCIKAPTTR 240
            + K L +     ++I RK K K  D++HIT++EV   EEK+  D+++ S FD +     R
Sbjct: 846  SRKGLGYKPPEPIRITRKGKEKVVDSNHITVKEVDSMEEKE-GDSQRTSTFDRLSPHVAR 905

Query: 241  LPVHQCFV-----------------PSRMNRRPFVLINTESPLNVKRQLVTLTDPSKMNQ 299
             PV +                     S   R      N +  L VKR  V LT+  K + 
Sbjct: 906  APVFERLSMIEAERKYLQSTSSLDRRSTFQRLTMTFKNEKGSLKVKRHDVILTNSEKEDL 965

[Close]
BLAST of Lag0005899 vs. NCBI nr
Match: KAA0054169.1 (uncharacterized protein E6C27_scaffold131G00980 [Cucumis melo var. makuwa])

HSP 1 Score: 156.8 bits (395), Expect = 3.1e-34
Identity = 130/384 (33.85%), Postives = 177/384 (46.09%), Query Frame = 0 

Query: 1   MQNDKAGEIIPAKIPLIENQKVEHQKNV--KESIEEVDACEVQTKEASTHPTKSKAPKEE 60
           ++ND + E +  ++PL+  +     K++  +E  +  +       EAST  TKS    +E
Sbjct: 80  LKNDSSLETVSVEVPLVNREDNLQLKSLASREPYKSTETFHSGKGEASTSTTKSMILMDE 139

Query: 61  VLLNVPILRYISLPRRKKGESPFTKYSGILKVGDVEVLKENFITPVTTNTKQEIEESKID 120
              N PILRY+ L R KKGESPF +    LKVGD+EVLKE+F T +T  TKQEI   KID
Sbjct: 140 KTSNPPILRYVPLTRHKKGESPFVESPQGLKVGDIEVLKESFTTSLTKITKQEI---KID 199

Query: 121 RTKVASSEKTNKD--------------LSFLRHRTLQIIR-------------------- 180
            T+ +  ++  KD                F  H   + ++                    
Sbjct: 200 LTEASLPQRRTKDGFDPKAYKLMEKAGYEFTTHTEFKSLKIHEQPKLSSTQKKLLREGHA 259

Query: 181 ----------------------KWKVKDAHHITIEEVSESEEKKTSDNKKISVFDCIKAP 240
                                 K KV D +HIT++EV   EEK+ +  +  S  D  K  
Sbjct: 260 IPMSRKGLGYKSPEPICITRKGKEKVVDNNHITVKEVDSMEEKEGTHVQTGSSIDTKKKE 319

Query: 241 TT----------RLPVHQCF-----------------VPSRMNRRPFVLINT-ESPLNVK 299
           +T             V  C                  VPSRM R+ FV +NT +  L VK
Sbjct: 320 STSRVSVWRRIKHTDVESCHGKEFPCEVKGEREIRSNVPSRMKRKTFVTLNTSQGSLKVK 379

[Close]
BLAST of Lag0005899 vs. NCBI nr
Match: KAA0037793.1 (uncharacterized protein E6C27_scaffold918G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 156.8 bits (395), Expect = 3.1e-34
Identity = 137/416 (32.93%), Postives = 188/416 (45.19%), Query Frame = 0 

Query: 1   MQNDKAGEIIPAKIPLIENQKVEHQKNV--KESIEEVDACEVQTKEASTHPTKSKAPKEE 60
           ++ND + E +  ++PL+  +     K++  KE  +          EAST   KS    +E
Sbjct: 526 LKNDCSPEAVSVEVPLVNREDNLQLKSLTSKELHKSTGTFHSGKSEASTSTAKSVILMDE 585

Query: 61  VLLNVPILRYISLPRRKKGESPFTKYSGILKVGDVEVLKENFITPVTTNTKQEIEESKID 120
              N PILRY+ L R KKGESPF +    LKVGD+EVLKE+F TP+T  TKQEI   KID
Sbjct: 586 KTSNPPILRYVPLSRSKKGESPFVESPQGLKVGDIEVLKESFTTPLTKITKQEI---KID 645

Query: 121 RTKVASSEKTNKD--------------LSFLRHRTLQIIR-------------------- 180
            T+ +  ++  KD                F+ H   + ++                    
Sbjct: 646 LTEASLPQRQTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLLREGHVIPMSRKG 705

Query: 181 ---------------KWKVKDAHHITIEEVSES-EEKKTSDNKKISVFDCI--------- 240
                          K KV D++HIT++EV  + ++KK S   K S F  +         
Sbjct: 706 LGYKLPGPIRITRKGKEKVVDSNHITVKEVDIAWKKKKASMTTKPSAFKRLSITKKKNAQ 765

Query: 241 ---------------------------KAPTTRLPVH----------------------- 300
                                      K  T+R+ V                        
Sbjct: 766 TPRASIINHLGDGGLHVQTDSSIDTKKKESTSRVSVWHRIKHIDVESHHGKEFPCEVKGE 825

Query: 301 ---QCFVPSRMNRRPFVLINT-ESPLNVKRQLVTLTDPSKMNQEHEEEQANCCHIFFKEM 302
              +  VPSRM R+ FV +NT +  L VKR  V LT+P K + E  E + +C HI   E 
Sbjct: 826 REIRSNVPSRMKRKTFVTLNTSQGSLKVKRHDVILTNPEKEDSEQGEGEISCHHITILEE 885

[Close]
BLAST of Lag0005899 vs. NCBI nr
Match: TYK02888.1 (uncharacterized protein E5676_scaffold968G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 5.2e-34
Identity = 136/416 (32.69%), Postives = 187/416 (44.95%), Query Frame = 0 

Query: 1   MQNDKAGEIIPAKIPLIENQKVEHQKNV--KESIEEVDACEVQTKEASTHPTKSKAPKEE 60
           ++ND + E +  ++PL+  +     K++  KE  +          EAST   KS    +E
Sbjct: 438 LKNDCSPEAVSVEVPLVNREDNLQLKSLTSKELHKSTGTFHSGKSEASTSTAKSVILMDE 497

Query: 61  VLLNVPILRYISLPRRKKGESPFTKYSGILKVGDVEVLKENFITPVTTNTKQEIEESKID 120
              N PILRY+ L R KKGESPF +    LKVGD+E+LKE F TP+T  TKQEI   KID
Sbjct: 498 KTSNPPILRYVPLSRSKKGESPFVESPQGLKVGDIEILKERFTTPLTKITKQEI---KID 557

Query: 121 RTKVASSEKTNKD--------------LSFLRHRTLQIIR-------------------- 180
            T+ +  ++  KD                F+ H   + ++                    
Sbjct: 558 LTEASLPQRQTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLLREGHVIPMSRKG 617

Query: 181 ---------------KWKVKDAHHITIEEVSES-EEKKTSDNKKISVFDCI--------- 240
                          K KV D++HIT++EV  + ++KK S   K S F  +         
Sbjct: 618 LGYKLPGPIRITRKGKEKVVDSNHITVKEVDIAWKKKKASMTTKPSAFKRLSITKKKNAQ 677

Query: 241 ---------------------------KAPTTRLPVH----------------------- 300
                                      K  T+R+ V                        
Sbjct: 678 TPRASIINHLGDGGLHVQTDSSIDTKKKESTSRVSVWHRIKHIDVESHHGKEFPCEVKGE 737

Query: 301 ---QCFVPSRMNRRPFVLINT-ESPLNVKRQLVTLTDPSKMNQEHEEEQANCCHIFFKEM 302
              +  VPSRM R+ FV +NT +  L VKR  V LT+P K + E  E + +C HI   E 
Sbjct: 738 REIRSNVPSRMKRKTFVTLNTSQGSLKVKRHDVILTNPEKEDSEQGEGEISCHHITILEE 797

[Close]
BLAST of Lag0005899 vs. NCBI nr
Match: KAA0041300.1 (uncharacterized protein E6C27_scaffold128G002930 [Cucumis melo var. makuwa] >TYK02760.1 uncharacterized protein E5676_scaffold145G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 1.3e-32
Identity = 114/300 (38.00%), Postives = 159/300 (53.00%), Query Frame = 0 

Query: 1   MQNDKAGEIIPAKIPLIENQKVEHQKNV--KESIEEVDACEVQTKEASTHPTKSKAPKEE 60
           ++N  + E +  +IPL+  +     K++  +E  +  +       EAST  TKS    +E
Sbjct: 448 LKNGNSLEAVHVEIPLVNREDNLQLKSLASREPHKSTETFNCGKGEASTGTTKSMILMDE 507

Query: 61  VLLNVPILRYISLPRRKKGESPFTKYSGILKVGDVEVLKENFITPVTTNTKQEIEESKID 120
              N PILRYI L R KKGESPF +    LKVGD+EVLKE+F T +T  TKQ I   KID
Sbjct: 508 KTSNPPILRYIPLLRCKKGESPFVESPQGLKVGDIEVLKESFTTSLTKITKQGI---KID 567

Query: 121 RTKVASSEKTNKDLSFLRHRTLQIIRKWKVKDAHHITIEEVSESEEKKTSDNKKISVFDC 180
            T+ +  ++  KD+     +  +++ K       HI  + +   E+ + S  +K  +++ 
Sbjct: 568 LTEPSLPQRHTKDM--FDPKAYKLMAKAGYDLTTHIECKSLKIHEQPELSSIQKKLLWEG 627

Query: 181 IKAPTTRLPVHQCFVPSRMNRRPFVLINTESPLNVKRQLVTLTDPSKMNQEHEEEQANCC 240
              P  R  +                  ++  LNVKR  V LT+P K + E  E + +C 
Sbjct: 628 HAIPVLRKGLR---------------YKSQGSLNVKRHDVILTNPKKEDSEQGEGETSCH 687

Query: 241 HIFFKEMPDIEISEEDVEKAPTSLEDSNQSTIDELKEVNIRTTEEPHPTFINASLSAEEE 299
           HI   E  +IE  EED E A  SLED  QST+DELKEVN+ T EEP PTFIN SLS+EEE
Sbjct: 688 HITILEELEIETPEEDKEDAQQSLEDGGQSTVDELKEVNLGTIEEPRPTFINVSLSSEEE 727

[Close]
BLAST of Lag0005899 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 5.3e-40
Identity = 132/370 (35.68%), Postives = 184/370 (49.73%), Query Frame = 0 

Query: 1    MQNDKAGEIIPAKIPLIENQKVEHQKNV--KESIEEVDACEVQTKEASTHPTKSKAPKEE 60
            ++ND + E++  ++PL+  +     K++  +ES +          EAST   KS    +E
Sbjct: 666  LKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFHSGKSEASTSTAKSVIVMDE 725

Query: 61   VLLNVPILRYISLPRRKKGESPFTKYSGILKVGDVEVLKENFITPVTTNTKQEIEESKI- 120
               N PILRY+ L RRKKGESPF ++   LKVGD+EVLKE+F TP+T  TKQEI+   I 
Sbjct: 726  KTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKESFTTPLTKITKQEIKIDLIE 785

Query: 121  ---------------------------------------DRTKVASSEK----------- 180
                                                   ++ K++S++K           
Sbjct: 786  ASLPQRRTKDGFDPKAYKSMAKAGYDFTTHTEFKSLKIHEQPKLSSTQKKLLREGHAIPM 845

Query: 181  TNKDLSFLRHRTLQIIRKWKVK--DAHHITIEEVSESEEKKTSDNKKISVFDCIKAPTTR 240
            + K L +     ++I RK K K  D++HIT++EV   EEK+  D+++ S FD +     R
Sbjct: 846  SRKGLGYKPPEPIRITRKGKEKVVDSNHITVKEVDSMEEKE-GDSQRTSTFDRLSPHVAR 905

Query: 241  LPVHQCFV-----------------PSRMNRRPFVLINTESPLNVKRQLVTLTDPSKMNQ 299
             PV +                     S   R      N +  L VKR  V LT+  K + 
Sbjct: 906  APVFERLSMIEAERKYLQSTSSLDRRSTFQRLTMTFKNEKGSLKVKRHDVILTNSEKEDL 965

[Close]
BLAST of Lag0005899 vs. ExPASy TrEMBL
Match: A0A5A7T485 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold918G00010 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-34
Identity = 137/416 (32.93%), Postives = 188/416 (45.19%), Query Frame = 0 

Query: 1   MQNDKAGEIIPAKIPLIENQKVEHQKNV--KESIEEVDACEVQTKEASTHPTKSKAPKEE 60
           ++ND + E +  ++PL+  +     K++  KE  +          EAST   KS    +E
Sbjct: 526 LKNDCSPEAVSVEVPLVNREDNLQLKSLTSKELHKSTGTFHSGKSEASTSTAKSVILMDE 585

Query: 61  VLLNVPILRYISLPRRKKGESPFTKYSGILKVGDVEVLKENFITPVTTNTKQEIEESKID 120
              N PILRY+ L R KKGESPF +    LKVGD+EVLKE+F TP+T  TKQEI   KID
Sbjct: 586 KTSNPPILRYVPLSRSKKGESPFVESPQGLKVGDIEVLKESFTTPLTKITKQEI---KID 645

Query: 121 RTKVASSEKTNKD--------------LSFLRHRTLQIIR-------------------- 180
            T+ +  ++  KD                F+ H   + ++                    
Sbjct: 646 LTEASLPQRQTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLLREGHVIPMSRKG 705

Query: 181 ---------------KWKVKDAHHITIEEVSES-EEKKTSDNKKISVFDCI--------- 240
                          K KV D++HIT++EV  + ++KK S   K S F  +         
Sbjct: 706 LGYKLPGPIRITRKGKEKVVDSNHITVKEVDIAWKKKKASMTTKPSAFKRLSITKKKNAQ 765

Query: 241 ---------------------------KAPTTRLPVH----------------------- 300
                                      K  T+R+ V                        
Sbjct: 766 TPRASIINHLGDGGLHVQTDSSIDTKKKESTSRVSVWHRIKHIDVESHHGKEFPCEVKGE 825

Query: 301 ---QCFVPSRMNRRPFVLINT-ESPLNVKRQLVTLTDPSKMNQEHEEEQANCCHIFFKEM 302
              +  VPSRM R+ FV +NT +  L VKR  V LT+P K + E  E + +C HI   E 
Sbjct: 826 REIRSNVPSRMKRKTFVTLNTSQGSLKVKRHDVILTNPEKEDSEQGEGEISCHHITILEE 885

[Close]
BLAST of Lag0005899 vs. ExPASy TrEMBL
Match: A0A5A7UKY9 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00980 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-34
Identity = 130/384 (33.85%), Postives = 177/384 (46.09%), Query Frame = 0 

Query: 1   MQNDKAGEIIPAKIPLIENQKVEHQKNV--KESIEEVDACEVQTKEASTHPTKSKAPKEE 60
           ++ND + E +  ++PL+  +     K++  +E  +  +       EAST  TKS    +E
Sbjct: 80  LKNDSSLETVSVEVPLVNREDNLQLKSLASREPYKSTETFHSGKGEASTSTTKSMILMDE 139

Query: 61  VLLNVPILRYISLPRRKKGESPFTKYSGILKVGDVEVLKENFITPVTTNTKQEIEESKID 120
              N PILRY+ L R KKGESPF +    LKVGD+EVLKE+F T +T  TKQEI   KID
Sbjct: 140 KTSNPPILRYVPLTRHKKGESPFVESPQGLKVGDIEVLKESFTTSLTKITKQEI---KID 199

Query: 121 RTKVASSEKTNKD--------------LSFLRHRTLQIIR-------------------- 180
            T+ +  ++  KD                F  H   + ++                    
Sbjct: 200 LTEASLPQRRTKDGFDPKAYKLMEKAGYEFTTHTEFKSLKIHEQPKLSSTQKKLLREGHA 259

Query: 181 ----------------------KWKVKDAHHITIEEVSESEEKKTSDNKKISVFDCIKAP 240
                                 K KV D +HIT++EV   EEK+ +  +  S  D  K  
Sbjct: 260 IPMSRKGLGYKSPEPICITRKGKEKVVDNNHITVKEVDSMEEKEGTHVQTGSSIDTKKKE 319

Query: 241 TT----------RLPVHQCF-----------------VPSRMNRRPFVLINT-ESPLNVK 299
           +T             V  C                  VPSRM R+ FV +NT +  L VK
Sbjct: 320 STSRVSVWRRIKHTDVESCHGKEFPCEVKGEREIRSNVPSRMKRKTFVTLNTSQGSLKVK 379

[Close]
BLAST of Lag0005899 vs. ExPASy TrEMBL
Match: A0A5D3BV77 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00270 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.5e-34
Identity = 136/416 (32.69%), Postives = 187/416 (44.95%), Query Frame = 0 

Query: 1   MQNDKAGEIIPAKIPLIENQKVEHQKNV--KESIEEVDACEVQTKEASTHPTKSKAPKEE 60
           ++ND + E +  ++PL+  +     K++  KE  +          EAST   KS    +E
Sbjct: 438 LKNDCSPEAVSVEVPLVNREDNLQLKSLTSKELHKSTGTFHSGKSEASTSTAKSVILMDE 497

Query: 61  VLLNVPILRYISLPRRKKGESPFTKYSGILKVGDVEVLKENFITPVTTNTKQEIEESKID 120
              N PILRY+ L R KKGESPF +    LKVGD+E+LKE F TP+T  TKQEI   KID
Sbjct: 498 KTSNPPILRYVPLSRSKKGESPFVESPQGLKVGDIEILKERFTTPLTKITKQEI---KID 557

Query: 121 RTKVASSEKTNKD--------------LSFLRHRTLQIIR-------------------- 180
            T+ +  ++  KD                F+ H   + ++                    
Sbjct: 558 LTEASLPQRQTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLLREGHVIPMSRKG 617

Query: 181 ---------------KWKVKDAHHITIEEVSES-EEKKTSDNKKISVFDCI--------- 240
                          K KV D++HIT++EV  + ++KK S   K S F  +         
Sbjct: 618 LGYKLPGPIRITRKGKEKVVDSNHITVKEVDIAWKKKKASMTTKPSAFKRLSITKKKNAQ 677

Query: 241 ---------------------------KAPTTRLPVH----------------------- 300
                                      K  T+R+ V                        
Sbjct: 678 TPRASIINHLGDGGLHVQTDSSIDTKKKESTSRVSVWHRIKHIDVESHHGKEFPCEVKGE 737

Query: 301 ---QCFVPSRMNRRPFVLINT-ESPLNVKRQLVTLTDPSKMNQEHEEEQANCCHIFFKEM 302
              +  VPSRM R+ FV +NT +  L VKR  V LT+P K + E  E + +C HI   E 
Sbjct: 738 REIRSNVPSRMKRKTFVTLNTSQGSLKVKRHDVILTNPEKEDSEQGEGEISCHHITILEE 797

[Close]
BLAST of Lag0005899 vs. ExPASy TrEMBL
Match: A0A5D3BUF9 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00140 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 6.2e-33
Identity = 114/300 (38.00%), Postives = 159/300 (53.00%), Query Frame = 0 

Query: 1   MQNDKAGEIIPAKIPLIENQKVEHQKNV--KESIEEVDACEVQTKEASTHPTKSKAPKEE 60
           ++N  + E +  +IPL+  +     K++  +E  +  +       EAST  TKS    +E
Sbjct: 448 LKNGNSLEAVHVEIPLVNREDNLQLKSLASREPHKSTETFNCGKGEASTGTTKSMILMDE 507

Query: 61  VLLNVPILRYISLPRRKKGESPFTKYSGILKVGDVEVLKENFITPVTTNTKQEIEESKID 120
              N PILRYI L R KKGESPF +    LKVGD+EVLKE+F T +T  TKQ I   KID
Sbjct: 508 KTSNPPILRYIPLLRCKKGESPFVESPQGLKVGDIEVLKESFTTSLTKITKQGI---KID 567

Query: 121 RTKVASSEKTNKDLSFLRHRTLQIIRKWKVKDAHHITIEEVSESEEKKTSDNKKISVFDC 180
            T+ +  ++  KD+     +  +++ K       HI  + +   E+ + S  +K  +++ 
Sbjct: 568 LTEPSLPQRHTKDM--FDPKAYKLMAKAGYDLTTHIECKSLKIHEQPELSSIQKKLLWEG 627

Query: 181 IKAPTTRLPVHQCFVPSRMNRRPFVLINTESPLNVKRQLVTLTDPSKMNQEHEEEQANCC 240
              P  R  +                  ++  LNVKR  V LT+P K + E  E + +C 
Sbjct: 628 HAIPVLRKGLR---------------YKSQGSLNVKRHDVILTNPKKEDSEQGEGETSCH 687

Query: 241 HIFFKEMPDIEISEEDVEKAPTSLEDSNQSTIDELKEVNIRTTEEPHPTFINASLSAEEE 299
           HI   E  +IE  EED E A  SLED  QST+DELKEVN+ T EEP PTFIN SLS+EEE
Sbjct: 688 HITILEELEIETPEEDKEDAQQSLEDGGQSTVDELKEVNLGTIEEPRPTFINVSLSSEEE 727

The following BLAST results are available for this feature:
BLAST of Lag0005899 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0061113.11.1e-3935.68ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp... [more]
KAA0054169.13.1e-3433.85uncharacterized protein E6C27_scaffold131G00980 [Cucumis melo var. makuwa][more]
KAA0037793.13.1e-3432.93uncharacterized protein E6C27_scaffold918G00010 [Cucumis melo var. makuwa][more]
TYK02888.15.2e-3432.69uncharacterized protein E5676_scaffold968G00270 [Cucumis melo var. makuwa][more]
KAA0041300.11.3e-3238.00uncharacterized protein E6C27_scaffold128G002930 [Cucumis melo var. makuwa] >TYK... [more]
BLAST of Lag0005899 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0005899 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BY545.3e-4035.68Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7T4851.5e-3432.93Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold91... [more]
A0A5A7UKY91.5e-3433.85Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3BV772.5e-3432.69Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96... [more]
A0A5D3BUF96.2e-3338.00Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
BLAST of Lag0005899 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005899.1Lag0005899.1mRNA