Lag0005862 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005862
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase
Location	chr6: 32432292 .. 32432720 (-)
RNA-Seq Expression	Lag0005862
Synteny	Lag0005862

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACGATTTTGATGTGATTCTAGGCATGGACTGGTTGGCTGGTAATAACGCCACCATTCATTGTGCTAAGAAGGAAGTGCATCTCAAGTTGCCTTCGGGCCAAGGGTTCAAGTTTAAAGGAGCGAAGAACGGAAGTCCTAAGGTAGTTTCTGCCTTGAAAGCCAAGCGTCTTATGCAGCATGGAGCTTGGGCGTATTTGGCAAGTGTGGTGGATGTTTCTAAAGAATCGCCTAGTTTGGACTCCGTCCCCATCGTGAAAGGGTTCCCAGATGTCTTTCCAGAAGATCTTCCTGGGCTACCTCCAGCTCGAGAAGTGGACTTCTGTATAGACCTTCTTCCTGGGACAGCACCGTTGTCTAAGGCACCTTATAGGATGGCACCAGCTGAGCTCAAGGAGCTCAAAGTGCAGCTTGAGGAGGAACCATAG

mRNA sequence

ATGCACGATTTTGATGTGATTCTAGGCATGGACTGGTTGGCTGGTAATAACGCCACCATTCATTGTGCTAAGAAGGAAGTGCATCTCAAGTTGCCTTCGGGCCAAGGGTTCAAGTTTAAAGGAGCGAAGAACGGAAGTCCTAAGGTAGTTTCTGCCTTGAAAGCCAAGCGTCTTATGCAGCATGGAGCTTGGGCGTATTTGGCAAGTGTGGTGGATGTTTCTAAAGAATCGCCTAGTTTGGACTCCGTCCCCATCGTGAAAGGGTTCCCAGATGTCTTTCCAGAAGATCTTCCTGGGCTACCTCCAGCTCGAGAAGTGGACTTCTGTATAGACCTTCTTCCTGGGACAGCACCGTTGTCTAAGGCACCTTATAGGATGGCACCAGCTGAGCTCAAGGAGCTCAAAGTGCAGCTTGAGGAGGAACCATAG

Coding sequence (CDS)

ATGCACGATTTTGATGTGATTCTAGGCATGGACTGGTTGGCTGGTAATAACGCCACCATTCATTGTGCTAAGAAGGAAGTGCATCTCAAGTTGCCTTCGGGCCAAGGGTTCAAGTTTAAAGGAGCGAAGAACGGAAGTCCTAAGGTAGTTTCTGCCTTGAAAGCCAAGCGTCTTATGCAGCATGGAGCTTGGGCGTATTTGGCAAGTGTGGTGGATGTTTCTAAAGAATCGCCTAGTTTGGACTCCGTCCCCATCGTGAAAGGGTTCCCAGATGTCTTTCCAGAAGATCTTCCTGGGCTACCTCCAGCTCGAGAAGTGGACTTCTGTATAGACCTTCTTCCTGGGACAGCACCGTTGTCTAAGGCACCTTATAGGATGGCACCAGCTGAGCTCAAGGAGCTCAAAGTGCAGCTTGAGGAGGAACCATAG

Protein sequence

MHDFDVILGMDWLAGNNATIHCAKKEVHLKLPSGQGFKFKGAKNGSPKVVSALKAKRLMQHGAWAYLASVVDVSKESPSLDSVPIVKGFPDVFPEDLPGLPPAREVDFCIDLLPGTAPLSKAPYRMAPAELKELKVQLEEEP

Homology

[Close]

BLAST of Lag0005862 vs. NCBI nr
Match: XP_022146110.1 (uncharacterized protein LOC111015405 [Momordica charantia])

HSP 1 Score: 213.0 bits (541), Expect = 1.7e-51
Identity = 100/140 (71.43%), Postives = 117/140 (83.57%), Query Frame = 0


Query: 1   MHDFDVILGMDWLAGNNATIHCAKKEVHLKLPSGQGFKFKGAKNGSPKVVSALKAKRLMQ 60
           M DFDVILGMDWLA N A I+C+++EV  +LPSG+ F FKG     P+ VSALKA+RL+Q
Sbjct: 203 MQDFDVILGMDWLATNQANINCSRREVSFQLPSGRNFTFKGVTGRVPRTVSALKARRLLQ 262

Query: 61  HGAWAYLASVVDVSKESPSLDSVPIVKGFPDVFPEDLPGLPPAREVDFCIDLLPGTAPLS 120
           +GAW YLA+VVD+SK  PS+DSV +V+ FPDVFP DLPGLPP RE+DFCIDL PGTAP+S
Sbjct: 263 NGAWGYLANVVDISKTPPSIDSVHVVREFPDVFPNDLPGLPPVRELDFCIDLPPGTAPIS 322

Query: 121 KAPYRMAPAELKELKVQLEE 141
           KAPYRMAPAELKELK QLEE
Sbjct: 323 KAPYRMAPAELKELKAQLEE 342

[Close]

BLAST of Lag0005862 vs. NCBI nr
Match: XP_022156880.1 (uncharacterized protein LOC111023714 [Momordica charantia])

HSP 1 Score: 211.1 bits (536), Expect = 6.4e-51
Identity = 100/140 (71.43%), Postives = 117/140 (83.57%), Query Frame = 0


Query: 1   MHDFDVILGMDWLAGNNATIHCAKKEVHLKLPSGQGFKFKGAKNGSPKVVSALKAKRLMQ 60
           M DFDVILGMDWLA N A I+C+++EV  +LPSGQ F FK    G P+ VSALKA+RL+Q
Sbjct: 66  MRDFDVILGMDWLATNQANINCSRREVSFQLPSGQSFTFKEVTGGVPRAVSALKARRLLQ 125

Query: 61  HGAWAYLASVVDVSKESPSLDSVPIVKGFPDVFPEDLPGLPPAREVDFCIDLLPGTAPLS 120
           +GAW YLASVVD+S   P++DSV +VK FPDVFPEDL GLPP RE+DFCIDLLPGTAP+S
Sbjct: 126 NGAWGYLASVVDISVTPPNIDSVHVVKEFPDVFPEDLLGLPPVRELDFCIDLLPGTAPIS 185

Query: 121 KAPYRMAPAELKELKVQLEE 141
           KAPYRM+PAEL+ELK QLEE
Sbjct: 186 KAPYRMSPAELEELKAQLEE 205

[Close]

BLAST of Lag0005862 vs. NCBI nr
Match: XP_022156992.1 (uncharacterized protein LOC111023821 [Momordica charantia])

HSP 1 Score: 206.8 bits (525), Expect = 1.2e-49
Identity = 101/140 (72.14%), Postives = 113/140 (80.71%), Query Frame = 0


Query: 1   MHDFDVILGMDWLAGNNATIHCAKKEVHLKLPSGQGFKFKGAKNGSPKVVSALKAKRLMQ 60
           M DFDVILGMDWLA N A I C+KKE   +LPS Q F FKG K   P+VVSALKA   +Q
Sbjct: 452 MQDFDVILGMDWLAANQANIDCSKKEFSFRLPSEQNFTFKGVKARVPRVVSALKASHHLQ 511

Query: 61  HGAWAYLASVVDVSKESPSLDSVPIVKGFPDVFPEDLPGLPPAREVDFCIDLLPGTAPLS 120
            GAWAYLASVVD  K  PS+++V +V  F DVFPEDLPGLPP+REVDFCI+LLPGTAP+S
Sbjct: 512 RGAWAYLASVVDARKVVPSIEAVRVVNEFTDVFPEDLPGLPPSREVDFCIELLPGTAPIS 571

Query: 121 KAPYRMAPAELKELKVQLEE 141
           KAPYRMAPAELKELK+QLEE
Sbjct: 572 KAPYRMAPAELKELKLQLEE 591

[Close]

BLAST of Lag0005862 vs. NCBI nr
Match: XP_022159077.1 (uncharacterized protein LOC111025517 [Momordica charantia])

HSP 1 Score: 205.7 bits (522), Expect = 2.7e-49
Identity = 99/140 (70.71%), Postives = 113/140 (80.71%), Query Frame = 0


Query: 1   MHDFDVILGMDWLAGNNATIHCAKKEVHLKLPSGQGFKFKGAKNGSPKVVSALKAKRLMQ 60
           M DFDVILGMDWLA N A I+C+K+EV  +LPSG+ F FKG   G P+ VSALKA+RL+ 
Sbjct: 315 MRDFDVILGMDWLATNQANINCSKREVSFQLPSGRSFTFKGVSGGVPRAVSALKARRLLY 374

Query: 61  HGAWAYLASVVDVSKESPSLDSVPIVKGFPDVFPEDLPGLPPAREVDFCIDLLPGTAPLS 120
           +GAW YLASVVD+S   PS+DS  +VK F DVFPEDL GLPP RE+DFCIDLLPGTAP+S
Sbjct: 375 NGAWEYLASVVDISVTPPSIDSAHVVKVFSDVFPEDLQGLPPIRELDFCIDLLPGTAPIS 434

Query: 121 KAPYRMAPAELKELKVQLEE 141
           KAP RMAP ELKELK QLEE
Sbjct: 435 KAPCRMAPVELKELKAQLEE 454

[Close]

BLAST of Lag0005862 vs. NCBI nr
Match: XP_022156985.1 (uncharacterized protein LOC111023814 [Momordica charantia])

HSP 1 Score: 205.7 bits (522), Expect = 2.7e-49
Identity = 99/140 (70.71%), Postives = 114/140 (81.43%), Query Frame = 0


Query: 1   MHDFDVILGMDWLAGNNATIHCAKKEVHLKLPSGQGFKFKGAKNGSPKVVSALKAKRLMQ 60
           M DFD+ILGMDWLA N A+I+  ++EV  +LPSGQ F FKG     PKVVSALKA++L+Q
Sbjct: 254 MQDFDIILGMDWLATNQASINWLRREVSFQLPSGQRFTFKGVTGEVPKVVSALKARQLLQ 313

Query: 61  HGAWAYLASVVDVSKESPSLDSVPIVKGFPDVFPEDLPGLPPAREVDFCIDLLPGTAPLS 120
           HGAW YL SVVD SK +PS+DSV +   FPDVFPEDLPGLPP RE+DF IDL PGT P+S
Sbjct: 314 HGAWGYLVSVVDTSKGTPSVDSVLVANEFPDVFPEDLPGLPPVRELDFYIDLAPGTTPIS 373

Query: 121 KAPYRMAPAELKELKVQLEE 141
           +APYRMAPAELKELKVQLEE
Sbjct: 374 RAPYRMAPAELKELKVQLEE 393

The following BLAST results are available for this feature:

BLAST of Lag0005862 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146110.1	1.7e-51	71.43	uncharacterized protein LOC111015405 [Momordica charantia]	[more]
XP_022156880.1	6.4e-51	71.43	uncharacterized protein LOC111023714 [Momordica charantia]	[more]
XP_022156992.1	1.2e-49	72.14	uncharacterized protein LOC111023821 [Momordica charantia]	[more]
XP_022159077.1	2.7e-49	70.71	uncharacterized protein LOC111025517 [Momordica charantia]	[more]
XP_022156985.1	2.7e-49	70.71	uncharacterized protein LOC111023814 [Momordica charantia]	[more]

BLAST of Lag0005862 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 1..35 e-value: 1.2E-5 score: 26.9
None	No IPR available	PFAM	PF08284	RVP_2	coord: 1..31 e-value: 1.5E-8 score: 34.5
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 3..139
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 3..139
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 85..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005862.1	Lag0005862.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding