Lag0005849 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005849
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein MNN4-like
Locationchr6: 31861207 .. 31861602 (-)
RNA-Seq ExpressionLag0005849
SyntenyLag0005849
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGTGAGGGGGAAGATGGTCAGTTTCTCCTCAATCGATATTAACAGGGTGTACAAGATCAAGGCACCCTTGAACCCAAGAGGGAACGACGTTATCAGGAACCTTTCGGCCAAGCAGATGAAGGAAGCATTGAAGCTTGTGGCCAACAAGGGGGTTCAGTGGAAAGAATTGCAGACGAAAGTGAAGTCTTTAGTTCCAAGCAATCTAAAGCAAGAATCGGCAGTTTGGCTTCACTTCATAAAAAACCGCTTGATGCCAACCACCCACGATAGCACGATTTCAGTGGATAGAGTGATGCTACTCTATTGCCTTATGAAGGGGTTGGAGATCAACGTGGGGAGCATTATCAGGGATGAGATTTTAGCCTGTGGGAGAAAGAAGAACGAGTAG

mRNA sequence

ATGGCGATGGTGAGGGGGAAGATGGTCAGTTTCTCCTCAATCGATATTAACAGGGTGTACAAGATCAAGGCACCCTTGAACCCAAGAGGGAACGACGTTATCAGGAACCTTTCGGCCAAGCAGATGAAGGAAGCATTGAAGCTTGTGGCCAACAAGGGGGTTCAGTGGAAAGAATTGCAGACGAAAGTGAAGTCTTTAGTTCCAAGCAATCTAAAGCAAGAATCGGCAGTTTGGCTTCACTTCATAAAAAACCGCTTGATGCCAACCACCCACGATAGCACGATTTCAGTGGATAGAGTGATGCTACTCTATTGCCTTATGAAGGGGTTGGAGATCAACGTGGGGAGCATTATCAGGGATGAGATTTTAGCCTGTGGGAGAAAGAAGAACGAGTAG

Coding sequence (CDS)

ATGGCGATGGTGAGGGGGAAGATGGTCAGTTTCTCCTCAATCGATATTAACAGGGTGTACAAGATCAAGGCACCCTTGAACCCAAGAGGGAACGACGTTATCAGGAACCTTTCGGCCAAGCAGATGAAGGAAGCATTGAAGCTTGTGGCCAACAAGGGGGTTCAGTGGAAAGAATTGCAGACGAAAGTGAAGTCTTTAGTTCCAAGCAATCTAAAGCAAGAATCGGCAGTTTGGCTTCACTTCATAAAAAACCGCTTGATGCCAACCACCCACGATAGCACGATTTCAGTGGATAGAGTGATGCTACTCTATTGCCTTATGAAGGGGTTGGAGATCAACGTGGGGAGCATTATCAGGGATGAGATTTTAGCCTGTGGGAGAAAGAAGAACGAGTAG

Protein sequence

MAMVRGKMVSFSSIDINRVYKIKAPLNPRGNDVIRNLSAKQMKEALKLVANKGVQWKELQTKVKSLVPSNLKQESAVWLHFIKNRLMPTTHDSTISVDRVMLLYCLMKGLEINVGSIIRDEILACGRKKNE
Homology
BLAST of Lag0005849 vs. NCBI nr
Match: XP_038904385.1 (uncharacterized protein LOC120090747 [Benincasa hispida])

HSP 1 Score: 92.8 bits (229), Expect = 2.3e-15
Identity = 44/127 (34.65%), Postives = 78/127 (61.42%), Query Frame = 0

Query: 3   MVRGKMVSFSSIDINRVYKIKAPLNPRGNDVIRNLSAKQMKEALKLVANKGVQWKELQTK 62
           +++G +V FS+ DIN +YK+K   +  GN +I +   ++M++AL+ +   G QW      
Sbjct: 232 IMKGCIVPFSARDINELYKMKDIPDASGNKIIDDPQEEKMEDALRTLTQSGTQWSVSLKG 291

Query: 63  VKSLVPSNLKQESAVWLHFIKNRLMPTTHDSTISVDRVMLLYCLMKGLEINVGSIIRDEI 122
           +K+L  S L  E+ +W++ +K R++PT+HD T+S DRVM  YC+  G+ I+V  +I  + 
Sbjct: 292 IKTLASSKLLPEARLWVYLVKRRIIPTSHDKTVSRDRVMAAYCIACGILIDVSHLIAAQA 351

Query: 123 LACGRKK 130
               ++K
Sbjct: 352 KEAAQRK 358

BLAST of Lag0005849 vs. NCBI nr
Match: KAA0047856.1 (hypothetical protein E6C27_scaffold133G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 4.0e-15
Identity = 47/123 (38.21%), Postives = 76/123 (61.79%), Query Frame = 0

Query: 2   AMVRGKMVSFSSIDINRVYKIKAPLNPRGNDVIRNLSAKQMKEALKLVANKGVQWKELQT 61
           A V+GK ++F    IN +Y +K   N  G+ + +N   + ++EAL+     G +W ++ T
Sbjct: 120 AEVKGKRINFGPSTINVIYGLKN--NGLGHGIFKNPKDRNLQEALEKAKWSGTKWDQIPT 179

Query: 62  KVKSLVPSNLKQESAVWLHFIKNRLMPTTHDSTISVDRVMLLYCLMKGLEINVGSIIRDE 121
            +  L P NL  E++VWL FIK  +MPT HD+ IS++R+MLLY ++  + +NVG II + 
Sbjct: 180 YMYQLFPHNLTTEASVWLVFIKKNIMPTHHDNIISMERIMLLYYIIMEILVNVGEIICEH 239

Query: 122 ILA 125
           + A
Sbjct: 240 LTA 240

BLAST of Lag0005849 vs. NCBI nr
Match: KAA0048500.1 (protein MNN4-like [Cucumis melo var. makuwa] >TYK28291.1 protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-14
Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 0

Query: 2   AMVRGKMVSFSSIDINRVYKIKAPLNPRGNDVIRNLSAKQMKEALKLVANKGVQWKELQT 61
           A+V+GKMV+F    +N +Y ++         + +  S   M+ AL+ VA  G++W     
Sbjct: 184 AIVKGKMVNFGPKVVNVLYGLRQ--TTVEYPIFKEPSDIDMQNALERVAWPGMKWDITPI 243

Query: 62  KVKSLVPSNLKQESAVWLHFIKNRLMPTTHDSTISVDRVMLLYCLMKGLEINVGSIIRDE 121
           K   L P NLK  ++VWL FIK  LMPT HD+TIS++R+MLLYC+M+ + +NV  II + 
Sbjct: 244 KKYQLFPHNLKTTASVWLVFIKKNLMPTRHDNTISLERIMLLYCIMEEIPLNVDEIIYEP 303

Query: 122 ILA 125
           I A
Sbjct: 304 IEA 304

BLAST of Lag0005849 vs. NCBI nr
Match: XP_038876674.1 (chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida])

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-14
Identity = 43/121 (35.54%), Postives = 77/121 (63.64%), Query Frame = 0

Query: 4   VRGKMVSFSSIDINRVYKIKAPLNPRGNDVIRNLSAKQMKEALKLVANKGVQWKELQTKV 63
           ++ + VSFS+ DIN +Y++K      GN +I + + +QM++AL+++   G++W      V
Sbjct: 294 LKRETVSFSARDINEIYQMKDNPYASGNKIIDDPTEQQMEDALQVLMQLGMKWSVSLKGV 353

Query: 64  KSLVPSNLKQESAVWLHFIKNRLMPTTHDSTISVDRVMLLYCLMKGLEINVGSIIRDEIL 123
            +L   +L  E  +W++ +K RL+ TTHD T+S DRVM  YC+++ + I+VG +I  ++ 
Sbjct: 354 STLASKSLLLEGRLWVYLVKKRLISTTHDKTVSRDRVMATYCIVRSIPIDVGQLIARQLR 413

Query: 124 A 125
           A
Sbjct: 414 A 414

BLAST of Lag0005849 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 89.0 bits (219), Expect = 3.4e-14
Identity = 47/126 (37.30%), Postives = 75/126 (59.52%), Query Frame = 0

Query: 4   VRGKMVSFSSIDINRVYKIKAPLNPRGNDVIRNLSAKQMKEALKLVANKGVQWKELQTKV 63
           VRG  VS+S   IN V+ +  P++   ++ I+N++ + +   L+ VA  G +W       
Sbjct: 104 VRGVQVSWSEEAINAVFGLGDPVDEH-SEFIQNITQQDLITVLETVAAAGAEWNVSAQGA 163

Query: 64  KSLVPSNLKQESAVWLHFIKNRLMPTTHDSTISVDRVMLLYCLMKGLEINVGSIIRDEIL 123
            + + S L   + VW HF+K+RL+PTTH  T+S DR++LL+ ++ G  INVG +I  EI 
Sbjct: 164 YTCIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIR 223

Query: 124 ACGRKK 130
           AC  +K
Sbjct: 224 ACAARK 228

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038904385.12.3e-1534.65uncharacterized protein LOC120090747 [Benincasa hispida][more]
KAA0047856.14.0e-1538.21hypothetical protein E6C27_scaffold133G001210 [Cucumis melo var. makuwa][more]
KAA0048500.11.5e-1441.46protein MNN4-like [Cucumis melo var. makuwa] >TYK28291.1 protein MNN4-like [Cucu... [more]
XP_038876674.11.5e-1435.54chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida][more]
PON46472.13.4e-1437.30hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005849.1Lag0005849.1mRNA