Lag0005848 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005848
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein of unknown function (DUF668)
Location	chr6: 31854813 .. 31855441 (+)
RNA-Seq Expression	Lag0005848
Synteny	Lag0005848

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAGCAACCCAAGTTCCAATCTTCCCCACAAGCCTCCAAATCCCACCACCACAATCACATTCTTTCCTTTGAAATCGCCAATGTCATTTCCCGAGCCATCCACCTCCACACCTCAAACACCTCCAATTCTCCAGTCTCCACGGCCAAATTCTTACCGCCGAGGGAATTACAACCATCATCTCCTGCGACTGGTCCTGGCCGAGAAAGTCCATGACTTGAACCAGGTGGCCGGCTCTGTCTCCAGACTCGGGAAGAGATGCTCTGTTCCGGCCATGCAGGGGTTCGAGCATATATACACCGACGTCGTCAGGGGAATCTCGAGGGTAAGAAGCTTGGGATTTTGACTAAGGATATGGATAATGGAAAGCTAGGAGGGCGAATTTGTACAGTACGATCGAGGTCTCAAATGGTCATAAATGGTCACCATTGAAAGAAGAAGGAACTCCGGCCGTAGCGGGAAGGAACTCCGGCGGTAGCGGGGAGGAGCTCCGGCGGCGGTGGGAGGATCTCCGGCAGCGATAGGGAGGAGATCCGGCGGCGGGGAGAAGAAGAAAGAGAAGGTGGGGACGACGGGGAGAAGAAGAGAGATGGAGGTGGGAAAGAGGAGAGAGAGAAAATTTCATAA

mRNA sequence

ATGTGGAGCAACCCAAGTTCCAATCTTCCCCACAAGCCTCCAAATCCCACCACCACAATCACATTCTTTCCTTTGAAATCGCCAATGTCATTTCCCGAGCCATCCACCTCCACACCTCAAACACCTCCAATTCTCCAGTCTCCACGGCCAAATTCTTACCGCCGAGGGAATTACAACCATCATCTCCTGCGACTGGTCCTGGCCGAGAAAGTCCATGACTTGAACCAGGTGGCCGGCTCTGTCTCCAGACTCGGGAAGAGATGCTCTGTTCCGGCCATGCAGGGGTTCGAGCATATATACACCGACGTCGTCAGGGGAATCTCGAGGCGGGAAGGAACTCCGGCGGTAGCGGGGAGGAGCTCCGGCGGCGGTGGGAGGATCTCCGGCAGCGATAGGGAGGAGATCCGGCGGCGGGGAGAAGAAGAAAGAGAAGGTGGGGACGACGGGGAGAAGAAGAGAGATGGAGGTGGGAAAGAGGAGAGAGAGAAAATTTCATAA

Coding sequence (CDS)

ATGTGGAGCAACCCAAGTTCCAATCTTCCCCACAAGCCTCCAAATCCCACCACCACAATCACATTCTTTCCTTTGAAATCGCCAATGTCATTTCCCGAGCCATCCACCTCCACACCTCAAACACCTCCAATTCTCCAGTCTCCACGGCCAAATTCTTACCGCCGAGGGAATTACAACCATCATCTCCTGCGACTGGTCCTGGCCGAGAAAGTCCATGACTTGAACCAGGTGGCCGGCTCTGTCTCCAGACTCGGGAAGAGATGCTCTGTTCCGGCCATGCAGGGGTTCGAGCATATATACACCGACGTCGTCAGGGGAATCTCGAGGCGGGAAGGAACTCCGGCGGTAGCGGGGAGGAGCTCCGGCGGCGGTGGGAGGATCTCCGGCAGCGATAGGGAGGAGATCCGGCGGCGGGGAGAAGAAGAAAGAGAAGGTGGGGACGACGGGGAGAAGAAGAGAGATGGAGGTGGGAAAGAGGAGAGAGAGAAAATTTCATAA

Protein sequence

MWSNPSSNLPHKPPNPTTTITFFPLKSPMSFPEPSTSTPQTPPILQSPRPNSYRRGNYNHHLLRLVLAEKVHDLNQVAGSVSRLGKRCSVPAMQGFEHIYTDVVRGISRREGTPAVAGRSSGGGGRISGSDREEIRRRGEEEREGGDDGEKKRDGGGKEEREKIS

Homology

[Close]

BLAST of Lag0005848 vs. NCBI nr
Match: XP_025647958.1 (uncharacterized protein LOC112742928 [Arachis hypogaea] >QHO53178.1 uncharacterized protein DS421_2g45630 [Arachis hypogaea] >RYR73551.1 hypothetical protein Ahy_A02g007937 [Arachis hypogaea])

HSP 1 Score: 76.6 bits (187), Expect = 2.2e-10
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 61  HLLRLVLAEKVHDLNQVAGSVSRLGKRCSVPAMQGFEHIYTDVVRGI 108
           HLL L L EK+ +LNQ+A  VSRLGK+CSVPA+QGFEHIY+D+V G+
Sbjct: 96  HLLELALVEKLEELNQIAAVVSRLGKKCSVPALQGFEHIYSDIVNGV 142

[Close]

BLAST of Lag0005848 vs. NCBI nr
Match: XP_015949294.1 (uncharacterized protein LOC107474207 [Arachis duranensis])

HSP 1 Score: 76.6 bits (187), Expect = 2.2e-10
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 61  HLLRLVLAEKVHDLNQVAGSVSRLGKRCSVPAMQGFEHIYTDVVRGI 108
           HLL L L EK+ +LNQ+A  VSRLGK+CSVPA+QGFEHIY+D+V G+
Sbjct: 96  HLLELALVEKLEELNQIAAVVSRLGKKCSVPALQGFEHIYSDIVNGV 142

[Close]

BLAST of Lag0005848 vs. NCBI nr
Match: XP_028113292.1 (uncharacterized protein LOC114311349 [Camellia sinensis])

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-10
Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 61  HLLRLVLAEKVHDLNQVAGSVSRLGKRCSVPAMQGFEHIYTDVVRG 107
           +LL L L+EK+ DLN+VAG VSRLGK+CSVPA+QGFEH+Y D+VRG
Sbjct: 93  YLLELALSEKLEDLNRVAGVVSRLGKKCSVPALQGFEHVYGDIVRG 138

[Close]

BLAST of Lag0005848 vs. NCBI nr
Match: KAF5941834.1 (hypothetical protein HYC85_019476 [Camellia sinensis])

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-10
Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 61  HLLRLVLAEKVHDLNQVAGSVSRLGKRCSVPAMQGFEHIYTDVVRG 107
           +LL L L+EK+ DLN+VAG VSRLGK+CSVPA+QGFEH+Y D+VRG
Sbjct: 93  YLLELALSEKLEDLNRVAGVVSRLGKKCSVPALQGFEHVYGDIVRG 138

[Close]

BLAST of Lag0005848 vs. NCBI nr
Match: XP_011649159.1 (uncharacterized protein LOC101220789 [Cucumis sativus] >KGN61618.1 hypothetical protein Csa_006489 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 8.3e-10
Identity = 30/47 (63.83%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 61  HLLRLVLAEKVHDLNQVAGSVSRLGKRCSVPAMQGFEHIYTDVVRGI 108
           HLL LV+AEK+ DLN+VA  VSRLGK+CS PA+QGF+H+Y D++ G+
Sbjct: 93  HLLELVVAEKIEDLNRVANVVSRLGKKCSQPALQGFQHVYLDIINGV 139

The following BLAST results are available for this feature:

BLAST of Lag0005848 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_025647958.1	2.2e-10	68.09	uncharacterized protein LOC112742928 [Arachis hypogaea] >QHO53178.1 uncharacteri...	[more]
XP_015949294.1	2.2e-10	68.09	uncharacterized protein LOC107474207 [Arachis duranensis]	[more]
XP_028113292.1	2.8e-10	71.74	uncharacterized protein LOC114311349 [Camellia sinensis]	[more]
KAF5941834.1	2.8e-10	71.74	hypothetical protein HYC85_019476 [Camellia sinensis]	[more]
XP_011649159.1	8.3e-10	63.83	uncharacterized protein LOC101220789 [Cucumis sativus] >KGN61618.1 hypothetical ...	[more]

BLAST of Lag0005848 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..55
None	No IPR available	PANTHER	PTHR31371	BNAC09G50660D PROTEIN	coord: 59..108
None	No IPR available	PANTHER	PTHR31371:SF2	PLANT/PROTEIN (DUF668)	coord: 59..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005848.1	Lag0005848.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045927	positive regulation of growth