Lag0005847 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005847
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	beta-glucuronosyltransferase GlcAT14B
Location	chr6: 31854317 .. 31854785 (-)
RNA-Seq Expression	Lag0005847
Synteny	Lag0005847

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTTGGATGGGAAATTCTGAAATCATGGAGATTGAAGGGAGGAATTTGTACAGTGCGTCTGGATCTGCAAATTTATGTGAAGAATCATCCTATTTTTAAGAAATTTGGGAATGACCATCCGATTTTTAAGAAATTTGGGAATGTGAAGGTCATTGCTAAGGCTAATCTTGTTACCTACTGTGGCCTGACTATGGTGGCCAACACATTGCACGCAGCAGTGGTGAGGAGCTCCGGCGGCGACGGGAGGAGATTCGGCGGCGGGAGAAGAATAAAGAGAAGGTGGGGGCGGCGGGGTGAAGAAGAGAGGGAGAGGTGGGAAAGAGGGGAGAGAGAGTTTTTTTTTAATAATAATTATTTATTATTATTAATATATTTTAATTATTATTATTATTATATTATTTTAATAAAAAAATCAATATTTTATTATTTTAAACTGTCACGTCAGCGCTAGAGGGACTCAGTAG

mRNA sequence

ATGGCAGTTGGATGGGAAATTCTGAAATCATGGAGATTGAAGGGAGGAATTTGTACAGTGCGTCTGGATCTGCAAATTTATGTGAAGAATCATCCTATTTTTAAGAAATTTGGGAATGACCATCCGATTTTTAAGAAATTTGGGAATGTGAAGGTCATTGCTAAGGCTAATCTTGTTACCTACTGTGGCCTGACTATGGTGGCCAACACATTGCACGCAGCAGTGGTGAGGAGCTCCGGCGGCGACGGGAGGAGATTCGGCGGCGGGAGAAGAATAAAGAGAAGGTGGGGGCGGCGGGGTGAAGAAGAGAGGGAGAGCGCTAGAGGGACTCAGTAG

Coding sequence (CDS)

ATGGCAGTTGGATGGGAAATTCTGAAATCATGGAGATTGAAGGGAGGAATTTGTACAGTGCGTCTGGATCTGCAAATTTATGTGAAGAATCATCCTATTTTTAAGAAATTTGGGAATGACCATCCGATTTTTAAGAAATTTGGGAATGTGAAGGTCATTGCTAAGGCTAATCTTGTTACCTACTGTGGCCTGACTATGGTGGCCAACACATTGCACGCAGCAGTGGTGAGGAGCTCCGGCGGCGACGGGAGGAGATTCGGCGGCGGGAGAAGAATAAAGAGAAGGTGGGGGCGGCGGGGTGAAGAAGAGAGGGAGAGCGCTAGAGGGACTCAGTAG

Protein sequence

MAVGWEILKSWRLKGGICTVRLDLQIYVKNHPIFKKFGNDHPIFKKFGNVKVIAKANLVTYCGLTMVANTLHAAVVRSSGGDGRRFGGGRRIKRRWGRRGEEERESARGTQ

Homology

[Close]

BLAST of Lag0005847 vs. NCBI nr
Match: XP_004147458.1 (beta-glucuronosyltransferase GlcAT14B [Cucumis sativus] >KGN59600.1 hypothetical protein Csa_002479 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 42/63 (66.67%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 21  RLDLQIYVKNHPIFKKFGNDHPIFKKFGNVKVIAKANLVTYCGLTMVANTLH-AAVVRSS 80
           RLDLQ YV+N          HPIFKKFGNVKVI KANLVTY G TMVANTLH AA++   
Sbjct: 123 RLDLQKYVQN----------HPIFKKFGNVKVITKANLVTYRGPTMVANTLHAAAILLRE 175

Query: 81  GGD 83
           GGD
Sbjct: 183 GGD 175

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BLAST of Lag0005847 vs. NCBI nr
Match: XP_008443440.1 (PREDICTED: beta-glucuronosyltransferase GlcAT14B [Cucumis melo] >KAA0053735.1 beta-glucuronosyltransferase GlcAT14B [Cucumis melo var. makuwa] >TYK25668.1 beta-glucuronosyltransferase GlcAT14B [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 42/63 (66.67%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 21  RLDLQIYVKNHPIFKKFGNDHPIFKKFGNVKVIAKANLVTYCGLTMVANTLH-AAVVRSS 80
           RLDLQ YV+N          HPIFKKFGNVKVI KANLVTY G TMVANTLH AA++   
Sbjct: 123 RLDLQKYVQN----------HPIFKKFGNVKVITKANLVTYRGPTMVANTLHAAAILLRE 175

Query: 81  GGD 83
           GGD
Sbjct: 183 GGD 175

[Close]

BLAST of Lag0005847 vs. NCBI nr
Match: XP_038905555.1 (beta-glucuronosyltransferase GlcAT14B [Benincasa hispida])

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-09
Identity = 41/63 (65.08%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 21  RLDLQIYVKNHPIFKKFGNDHPIFKKFGNVKVIAKANLVTYCGLTMVANTLH-AAVVRSS 80
           RLDLQ YV+N          HPIFKKFGNVKVI KANL+TY G TMVANTLH AA++   
Sbjct: 123 RLDLQNYVQN----------HPIFKKFGNVKVITKANLITYRGPTMVANTLHAAAILLRE 175

Query: 81  GGD 83
           GGD
Sbjct: 183 GGD 175

[Close]

BLAST of Lag0005847 vs. NCBI nr
Match: XP_030954139.1 (beta-glucuronosyltransferase GlcAT14B-like [Quercus lobata])

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-09
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 20  VRLDLQIYVKNHPIFKKFGNDHPIFKKFGNVKVIAKANLVTYCGLTMVANTLHAAVV 77
           V LDL+  V+      +F ++HP+F +FGNVK+IAKANLVTY G TMVANTLHAA +
Sbjct: 119 VHLDLEASVQERSDLNRFVSEHPVFSRFGNVKMIAKANLVTYRGPTMVANTLHAAAI 175

[Close]

BLAST of Lag0005847 vs. NCBI nr
Match: KAF3950670.1 (hypothetical protein CMV_023604 [Castanea mollissima])

HSP 1 Score: 72.0 bits (175), Expect = 3.6e-09
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 20  VRLDLQIYVKNHPIFKKFGNDHPIFKKFGNVKVIAKANLVTYCGLTMVANTLHAAVV 77
           V LDL+  V+      +F ++HP+F +FGNVK+IAKANLVTY G TMVANTLHAA +
Sbjct: 119 VHLDLEASVQERSDLNRFVSEHPVFARFGNVKMIAKANLVTYRGPTMVANTLHAAAI 175

[Close]

BLAST of Lag0005847 vs. ExPASy Swiss-Prot
Match: Q9LFQ0 (Beta-glucuronosyltransferase GlcAT14B OS=Arabidopsis thaliana OX=3702 GN=GLCAT14B PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.6e-07
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 21  RLDLQIYVKNHPIFKKFGNDHPIFKKFGNVKVIAKANLVTYCGLTMVANTLH-AAVVRSS 80
           RLDL  +V N          H +F++F NV++I KAN VTY G TMVANTLH AA++   
Sbjct: 129 RLDLSGFVAN----------HTLFQRFQNVRMIVKANFVTYRGPTMVANTLHAAAILLRE 181

Query: 81  GGD 83
           GGD
Sbjct: 189 GGD 181

[Close]

BLAST of Lag0005847 vs. ExPASy Swiss-Prot
Match: Q9FLD7 (Beta-glucuronosyltransferase GlcAT14A OS=Arabidopsis thaliana OX=3702 GN=GLCAT14A PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-05
Identity = 28/56 (50.00%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 21  RLDLQIYVKNHPIFKKFGNDHPIFKKFGNVKVIAKANLVTYCGLTMVANTLHAAVV 77
           R +L  Y+KN  +F++F N H          +I KANLVTY G TMVANTLHAA +
Sbjct: 142 REELHGYIKNSSLFRRFMNVH----------MIEKANLVTYRGPTMVANTLHAAAI 187

The following BLAST results are available for this feature:

BLAST of Lag0005847 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147458.1	1.2e-09	66.67	beta-glucuronosyltransferase GlcAT14B [Cucumis sativus] >KGN59600.1 hypothetical...	[more]
XP_008443440.1	1.2e-09	66.67	PREDICTED: beta-glucuronosyltransferase GlcAT14B [Cucumis melo] >KAA0053735.1 be...	[more]
XP_038905555.1	1.6e-09	65.08	beta-glucuronosyltransferase GlcAT14B [Benincasa hispida]	[more]
XP_030954139.1	2.8e-09	59.65	beta-glucuronosyltransferase GlcAT14B-like [Quercus lobata]	[more]
KAF3950670.1	3.6e-09	59.65	hypothetical protein CMV_023604 [Castanea mollissima]	[more]

BLAST of Lag0005847 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LFQ0	4.6e-07	50.79	Beta-glucuronosyltransferase GlcAT14B OS=Arabidopsis thaliana OX=3702 GN=GLCAT14...	[more]
Q9FLD7	1.1e-05	50.00	Beta-glucuronosyltransferase GlcAT14A OS=Arabidopsis thaliana OX=3702 GN=GLCAT14...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..111
None	No IPR available	PANTHER	PTHR45719:SF33	GLYCOSYL TRANSFERASE, FAMILY 14-RELATED	coord: 40..82
IPR044610	Beta-glucuronosyltransferase GlcAT14A/B/C	PANTHER	PTHR45719	GLYCOSYLTRANSFERASE	coord: 40..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005847.1	Lag0005847.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0015020	glucuronosyltransferase activity