Lag0005825 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005825
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGag-pro-like protein
Locationchr6: 31324779 .. 31325096 (+)
RNA-Seq ExpressionLag0005825
SyntenyLag0005825
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGCAAGGAAAGGATATGGAGAAAATGAAACAAGATATCAATAATCTTAGTGAACAAGTAGCGAAAATTCTAGAGCTACTTTCAACTGGTAAAGGAAAATGGGTTGTAGAAGCAACACAGGTAAGCAATCCAATCCAGGAAATCGATGATCCTGTTTATCCACCAGGATTTACTCCTCAACATGTACAACAACGCCTGCATTTTCCACAGCCACAAACCCCCAACAATATGTTGCTTCGAATCCACTCTACACTCCTATTCCATATATGGAAAAATTGGAAGCTTAAGCTGGAATTCAAATCAATAATATGA

mRNA sequence

ATGGAAGAGCAAGGAAAGGATATGGAGAAAATGAAACAAGATATCAATAATCTTAGTGAACAAGTAGCGAAAATTCTAGAGCTACTTTCAACTGGTAAAGGAAAATGGGTTGTAGAAGCAACACAGGTAAGCAATCCAATCCAGGAAATCGATGATCCTGTTTATCCACCAGGATTTACTCCTCAACATGTACAACAACGCCTGCATTTTCCACAGCCACAAACCCCCAACAATATGTTGCTTCGAATCCACTCTACACTCCTATTCCATATATGGAAAAATTGGAAGCTTAAGCTGGAATTCAAATCAATAATATGA

Coding sequence (CDS)

ATGGAAGAGCAAGGAAAGGATATGGAGAAAATGAAACAAGATATCAATAATCTTAGTGAACAAGTAGCGAAAATTCTAGAGCTACTTTCAACTGGTAAAGGAAAATGGGTTGTAGAAGCAACACAGGTAAGCAATCCAATCCAGGAAATCGATGATCCTGTTTATCCACCAGGATTTACTCCTCAACATGTACAACAACGCCTGCATTTTCCACAGCCACAAACCCCCAACAATATGTTGCTTCGAATCCACTCTACACTCCTATTCCATATATGGAAAAATTGGAAGCTTAAGCTGGAATTCAAATCAATAATATGA

Protein sequence

MEEQGKDMEKMKQDINNLSEQVAKILELLSTGKGKWVVEATQVSNPIQEIDDPVYPPGFTPQHVQQRLHFPQPQTPNNMLLRIHSTLLFHIWKNWKLKLEFKSII
Homology
[Close]
BLAST of Lag0005825 vs. NCBI nr
Match: KAA0036933.1 (uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 53/85 (62.35%), Postives = 65/85 (76.47%), Query Frame = 0 

Query: 1   MEEQGKDMEKMKQDINNLSEQVAKILELLSTGKGKWVVEATQVSNPIQEIDDPVYPPGFT 60
           MEE+ KDM+KM+Q+INNL EQV+KILELLS GKGK  V+ TQ SNPIQ+ DDP+YPPGFT
Sbjct: 568 MEEKDKDMDKMRQEINNLGEQVSKILELLSMGKGKAAVDTTQSSNPIQDTDDPIYPPGFT 627

Query: 61  PQHVQQRLHFPQPQTPNNMLLRIHS 86
           P H+    + P+ +  N M LRI S
Sbjct: 628 PYHI----NVPRLKPLNTMFLRIRS 648

[Close]
BLAST of Lag0005825 vs. NCBI nr
Match: XP_031741309.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC105435093 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 3.1e-18
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 0 

Query: 1  MEEQGKDMEKMKQDINNLSEQVAKILELLSTGKGKWVVEATQVSNPIQEIDDPVYPPGFT 60
          MEEQ KDM+KM+QDINNL EQV+KILELLS GKGK VVE  Q SNP+Q+ DDP+YPPGFT
Sbjct: 1  MEEQDKDMDKMRQDINNLGEQVSKILELLSAGKGKVVVETAQSSNPVQDTDDPIYPPGFT 60

Query: 61 PQHV 65
          P+H+
Sbjct: 61 PRHM 64

[Close]
BLAST of Lag0005825 vs. NCBI nr
Match: XP_031738857.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 3.1e-18
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 0 

Query: 1  MEEQGKDMEKMKQDINNLSEQVAKILELLSTGKGKWVVEATQVSNPIQEIDDPVYPPGFT 60
          MEEQ KDM+KM+QDINNL EQV+KILELLS GKGK VVE  Q SNP+Q+ DDP+YPPGFT
Sbjct: 1  MEEQDKDMDKMRQDINNLGEQVSKILELLSAGKGKVVVETAQSSNPVQDTDDPIYPPGFT 60

Query: 61 PQHV 65
          P+H+
Sbjct: 61 PRHM 64

[Close]
BLAST of Lag0005825 vs. NCBI nr
Match: XP_031737553.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116402446 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 3.1e-18
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 0 

Query: 1  MEEQGKDMEKMKQDINNLSEQVAKILELLSTGKGKWVVEATQVSNPIQEIDDPVYPPGFT 60
          MEEQ KDM+KM+QDINNL EQV+KILELLS GKGK VVE  Q SNP+Q+ DDP+YPPGFT
Sbjct: 1  MEEQDKDMDKMRQDINNLGEQVSKILELLSAGKGKVVVETAQSSNPVQDTDDPIYPPGFT 60

Query: 61 PQHV 65
          P+H+
Sbjct: 61 PRHM 64

[Close]
BLAST of Lag0005825 vs. NCBI nr
Match: XP_031742360.1 (uncharacterized protein LOC116404324 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 3.1e-18
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 0 

Query: 1  MEEQGKDMEKMKQDINNLSEQVAKILELLSTGKGKWVVEATQVSNPIQEIDDPVYPPGFT 60
          MEEQ KDM+KM+QDINNL EQV+KILELLS GKGK VVE  Q SNP+Q+ DDP+YPPGFT
Sbjct: 1  MEEQDKDMDKMRQDINNLGEQVSKILELLSAGKGKVVVETAQSSNPVQDTDDPIYPPGFT 60

Query: 61 PQHV 65
          P+H+
Sbjct: 61 PRHM 64

The following BLAST results are available for this feature:
BLAST of Lag0005825 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0036933.11.4e-1862.35uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa][more]
XP_031741309.13.1e-1875.00LOW QUALITY PROTEIN: uncharacterized protein LOC105435093 [Cucumis sativus][more]
XP_031738857.13.1e-1875.00LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus][more]
XP_031737553.13.1e-1875.00LOW QUALITY PROTEIN: uncharacterized protein LOC116402446 [Cucumis sativus][more]
XP_031742360.13.1e-1875.00uncharacterized protein LOC116404324 [Cucumis sativus][more]
BLAST of Lag0005825 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005825.1Lag0005825.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity