Lag0005818 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005818
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase
Location	chr6: 31016477 .. 31017273 (-)
RNA-Seq Expression	Lag0005818
Synteny	Lag0005818

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATCCCAATCTTGGGACCTTCTTCGAAGCTTGCGTGATTTTAATAATGATGCTTGGGTGATCGGGGGCGATATGAATGAAATTTTGTGGCAGAACGAAAAAGCAGGAGGCCCAGATAGGGATAATAGGCAAATTTCGGCCTTTAGAGAAGCTTTAGATGATTGTAACCTTAGGGATCTGGGCTTTTCTGGTGGAGTGTATACCTAGTGTAATAGGTGAAGTTCAGGTGTTCAGGTGAGTTTGAGGCTGGACCGTTTTCTGGAAAATCCCAACTTCTGTGCCCTTTTTGACAATTTTCAGGTTACTAACTTGGATTGGGCTAAATCTGATCATCACCCAATTAAACTTAGTATTGGTGCAGACGGACATGGTTTCTATCAGGGGAAAGAATGTTCGAGCGTTCAAATTTGAGGAATGGTGGACTTGTCAAGAGGAATGTCGTACTATCATCAAGCGCAGTGGTTGTTGGAATAGGTAAGGGATGAGCCTCCACACCTTCACGATGCATTGATTCTGTGTGCGTCGACTCTAAAGAGGTGGGGTCAAGATCAAAATAAGAGATTAAAGAGGGAGATCAATGTTGTTAAAGGGAAAATTAGGAGGGCATACGAGAACAGTGTATGTATCGATTTCTCTATTATTCACATTTTGGAGAAACGTCTTGATGACTTACTCTTGGAGGAGGAAATGTATTGGAAGCAAAGATCACGAGAAGGCTGACTAAAATGGGGGGATCAGAATACTTGATGGTTCCATCAAAAGGCTTCCATGAGGAGACAACAAAACTGGATTAA

mRNA sequence

ATGAGATCCCAATCTTGGGACCTTCTTCGAAGCTTGCGTGATTTTAATAATGATGCTTGGGTGATCGGGGGCGATATGAATGAAATTTTGTGGCAGAACGAAAAAGCAGGAGGCCCAGATAGGGATAATAGGCAAATTTCGGCCTTTAGAGAAGCTTTAGATGATTGTAACCTTAGGGATCTGGGCTTTTCTGGTGGAGTACGGACATGGTTTCTATCAGGGGAAAGAATGTTCGAGCGTTCAAATTTGAGGAATGGTGGACTTGTCAAGAGGAATGTCGTACTATCATCAAGCGCAGTGGTTGTTGGAATAGGAGGAAATGTATTGGAAGCAAAGATCACGAGAAGGCTGACTAAAATGGGGGGATCAGAATACTTGATGGTTCCATCAAAAGGCTTCCATGAGGAGACAACAAAACTGGATTAA

Coding sequence (CDS)

ATGAGATCCCAATCTTGGGACCTTCTTCGAAGCTTGCGTGATTTTAATAATGATGCTTGGGTGATCGGGGGCGATATGAATGAAATTTTGTGGCAGAACGAAAAAGCAGGAGGCCCAGATAGGGATAATAGGCAAATTTCGGCCTTTAGAGAAGCTTTAGATGATTGTAACCTTAGGGATCTGGGCTTTTCTGGTGGAGTACGGACATGGTTTCTATCAGGGGAAAGAATGTTCGAGCGTTCAAATTTGAGGAATGGTGGACTTGTCAAGAGGAATGTCGTACTATCATCAAGCGCAGTGGTTGTTGGAATAGGAGGAAATGTATTGGAAGCAAAGATCACGAGAAGGCTGACTAAAATGGGGGGATCAGAATACTTGATGGTTCCATCAAAAGGCTTCCATGAGGAGACAACAAAACTGGATTAA

Protein sequence

MRSQSWDLLRSLRDFNNDAWVIGGDMNEILWQNEKAGGPDRDNRQISAFREALDDCNLRDLGFSGGVRTWFLSGERMFERSNLRNGGLVKRNVVLSSSAVVVGIGGNVLEAKITRRLTKMGGSEYLMVPSKGFHEETTKLD

Homology

[Close]

BLAST of Lag0005818 vs. NCBI nr
Match: XP_042973089.1 (uncharacterized protein LOC122304890 [Carya illinoinensis])

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-14
Identity = 40/69 (57.97%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 2   RSQSWDLLRSLRDFNNDAWVIGGDMNEILWQNEKAGGPDRDNRQISAFREALDDCNLRDL 61
           R  SWDLLR L+  N+ AW +GGD NEILW NEK GG  R   QI+ FREAL+DC L D+
Sbjct: 115 RRLSWDLLRQLKPTNDGAWCVGGDFNEILWHNEKVGGKRRAESQINLFREALEDCGLIDV 174

Query: 62  GFSGGVRTW 71
           G+ G   TW
Sbjct: 175 GYRGNGFTW 183

[Close]

BLAST of Lag0005818 vs. NCBI nr
Match: XP_042980093.1 (uncharacterized protein LOC122310274 [Carya illinoinensis])

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-13
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 2   RSQSWDLLRSLRDFNNDAWVIGGDMNEILWQNEKAGGPDRDNRQISAFREALDDCNLRDL 61
           R  SWDLLR L+  N+ AW +GGD  EILW NEK GG  R   QI+ FREA++DC L D+
Sbjct: 115 RRLSWDLLRQLKPTNDGAWCVGGDFYEILWHNEKVGGKRRAETQINLFREAIEDCGLVDV 174

Query: 62  GFSGGVRTW 71
           G+ G   TW
Sbjct: 175 GYRGNGFTW 183

[Close]

BLAST of Lag0005818 vs. NCBI nr
Match: KAA3469008.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 85.9 bits (211), Expect = 3.1e-13
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 2   RSQSWDLLRSLRDFNNDAWVIGGDMNEILWQNEKAGGPDRDNRQISAFREALDDCNLRDL 61
           R  SW+LLR L++ NN  W++ GD NEIL+  EK GG  R+ RQ+ AFR+ LDDC L DL
Sbjct: 96  RRTSWELLRGLQNGNNLPWLVAGDFNEILFSFEKQGGQIREERQMDAFRKTLDDCELADL 155

Query: 62  GFSGGVRTW 71
           GFSG   TW
Sbjct: 156 GFSGQWYTW 164

[Close]

BLAST of Lag0005818 vs. NCBI nr
Match: KAA3453417.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 85.1 bits (209), Expect = 5.2e-13
Identity = 43/83 (51.81%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 2   RSQSWDLLRSLRDFNNDAWVIGGDMNEILWQNEKAGGPDRDNRQISAFREALDDCNLRDL 61
           RS SW LLR L + NN  WV+ GD NEI    EK GG  R  RQ+SAFR AL+DCNL D+
Sbjct: 221 RSDSWKLLRQLSNINNTPWVVLGDFNEIANSFEKQGGRRRPERQMSAFRTALEDCNLFDI 280

Query: 62  GFSGGVRTWFLSGERMFERSNLR 85
           GF+G    WF      F  +N+R
Sbjct: 281 GFTG---RWFTWERGKFRSTNIR 300

[Close]

BLAST of Lag0005818 vs. NCBI nr
Match: KAA3467408.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 85.1 bits (209), Expect = 5.2e-13
Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 2   RSQSWDLLRSLRDFNNDAWVIGGDMNEILWQNEKAGGPDRDNRQISAFREALDDCNLRDL 61
           R  SW+LLR+L++ NN  W++ GD NEI++  EK GG  R+ RQ+ AFR+ LDDC L DL
Sbjct: 71  RRASWELLRALQNGNNLPWLVAGDFNEIMFSFEKQGGRIREERQMDAFRKTLDDCELADL 130

Query: 62  GFSGGVRTW 71
           GFSG   TW
Sbjct: 131 GFSGHWYTW 139

The following BLAST results are available for this feature:

BLAST of Lag0005818 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_042973089.1	1.2e-14	57.97	uncharacterized protein LOC122304890 [Carya illinoinensis]	[more]
XP_042980093.1	1.8e-13	55.07	uncharacterized protein LOC122310274 [Carya illinoinensis]	[more]
KAA3469008.1	3.1e-13	56.52	reverse transcriptase [Gossypium australe]	[more]
KAA3453417.1	5.2e-13	51.81	reverse transcriptase [Gossypium australe]	[more]
KAA3467408.1	5.2e-13	55.07	reverse transcriptase [Gossypium australe]	[more]

BLAST of Lag0005818 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 2..87 e-value: 1.9E-5 score: 26.5
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 4..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005818.1	Lag0005818.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity