Lag0005816 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005816
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Nuclear shuttle protein
Location	chr6: 30935170 .. 30935931 (-)
RNA-Seq Expression	Lag0005816
Synteny	Lag0005816

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACTATACGTCGATCAAAAGTAGCCAGAGGGGAATATGCACGTTGGAAGACAACATATGATCGACGTCGTCCACAATACCGTTTACCCGTTCGAAGAGCGTTATATCGCGATGTGGATAGGGAGAGGCTTCGCCTTGCTAAACTTCACGAAATCCACTCTGGTGACGTGATGATCGTATACAACAACTGTAGTATCAGCCGATATATACAATGTCCTCGTAAGGACCATGGTATCACCGTCCGACGGAGAGACTACATTCGTATATGGCAGATTGGAATATATGGCCGCATTAAGGTAAATTTAGCTCATATCGAAGGCGCGATGGATACTGGAATATCCAATATCACTGGCGTGTTCACAGTGGCCCTTCTTCGTGATAAGACCCCGTATCTGCCTACCGGTGTCGAATTACTGCCAGATTTCAAGGAACTGTTTGGATCGTTAGAATCCAGTTACGGGAAATTAACAGTGTTGCCTAGACATGATGGTCGATACTGTATTGAACGTGTATGGCAGAAGAACATCTGTGTCGATCGGAAGTCTTTCGAGTTTCCAGTTAAGATGGTTCTCCAGTATTATAATCGACGCTATGCTATTTGGACTTCGTTCAAAGACACAGGCGATTTACACGGTGGTGGAACTATCGAAACGTTACAAAGAATGCCTTTTTCGTTTGCTAAACATGGGTGTCAGAATCGACATCGCTATGCAATTTGTATCTTGACACTGAAATGGTCTTCTATGGGTGAAACGTAG

mRNA sequence

ATGGAGACTATACGTCGATCAAAAGTAGCCAGAGGGGAATATGCACGTTGGAAGACAACATATGATCGACGTCGTCCACAATACCGTTTACCCGTTCGAAGAGCGTTATATCGCGATGTGGATAGGGAGAGGCTTCGCCTTGCTAAACTTCACGAAATCCACTCTGGTGACGTGATGATCGTATACAACAACTGTAGTATCAGCCGATATATACAATGTCCTCGTAAGGACCATGGTATCACCGTCCGACGGAGAGACTACATTCGTATATGGCAGATTGGAATATATGGCCGCATTAAGGTAAATTTAGCTCATATCGAAGGCGCGATGGATACTGGAATATCCAATATCACTGGCGTGTTCACAGTGGCCCTTCTTCGTGATAAGACCCCGTATCTGCCTACCGGTGTCGAATTACTGCCAGATTTCAAGGAACTGTTTGGATCGTTAGAATCCAGTTACGGGAAATTAACAGTGTTGCCTAGACATGATGGTCGATACTGTATTGAACGTGTATGGCAGAAGAACATCTGTGTCGATCGGAAGTCTTTCGAGTTTCCAGTTAAGATGGTTCTCCAGTATTATAATCGACGCTATGCTATTTGGACTTCGTTCAAAGACACAGGCGATTTACACGGTGGTGGAACTATCGAAACGTTACAAAGAATGCCTTTTTCGTTTGCTAAACATGGGTGTCAGAATCGACATCGCTATGCAATTTGTATCTTGACACTGAAATGGTCTTCTATGGGTGAAACGTAG

Coding sequence (CDS)

ATGGAGACTATACGTCGATCAAAAGTAGCCAGAGGGGAATATGCACGTTGGAAGACAACATATGATCGACGTCGTCCACAATACCGTTTACCCGTTCGAAGAGCGTTATATCGCGATGTGGATAGGGAGAGGCTTCGCCTTGCTAAACTTCACGAAATCCACTCTGGTGACGTGATGATCGTATACAACAACTGTAGTATCAGCCGATATATACAATGTCCTCGTAAGGACCATGGTATCACCGTCCGACGGAGAGACTACATTCGTATATGGCAGATTGGAATATATGGCCGCATTAAGGTAAATTTAGCTCATATCGAAGGCGCGATGGATACTGGAATATCCAATATCACTGGCGTGTTCACAGTGGCCCTTCTTCGTGATAAGACCCCGTATCTGCCTACCGGTGTCGAATTACTGCCAGATTTCAAGGAACTGTTTGGATCGTTAGAATCCAGTTACGGGAAATTAACAGTGTTGCCTAGACATGATGGTCGATACTGTATTGAACGTGTATGGCAGAAGAACATCTGTGTCGATCGGAAGTCTTTCGAGTTTCCAGTTAAGATGGTTCTCCAGTATTATAATCGACGCTATGCTATTTGGACTTCGTTCAAAGACACAGGCGATTTACACGGTGGTGGAACTATCGAAACGTTACAAAGAATGCCTTTTTCGTTTGCTAAACATGGGTGTCAGAATCGACATCGCTATGCAATTTGTATCTTGACACTGAAATGGTCTTCTATGGGTGAAACGTAG

Protein sequence

METIRRSKVARGEYARWKTTYDRRRPQYRLPVRRALYRDVDRERLRLAKLHEIHSGDVMIVYNNCSISRYIQCPRKDHGITVRRRDYIRIWQIGIYGRIKVNLAHIEGAMDTGISNITGVFTVALLRDKTPYLPTGVELLPDFKELFGSLESSYGKLTVLPRHDGRYCIERVWQKNICVDRKSFEFPVKMVLQYYNRRYAIWTSFKDTGDLHGGGTIETLQRMPFSFAKHGCQNRHRYAICILTLKWSSMGET

Homology

[Close]

BLAST of Lag0005816 vs. NCBI nr
Match: ADW24247.1 (NSP protein [Kudzu mosaic virus])

HSP 1 Score: 109.4 bits (272), Expect = 4.6e-20
Identity = 68/212 (32.08%), Postives = 105/212 (49.53%), Query Frame = 0


Query: 12  GEYARWKTTYDRRRPQYR-LPVRRALYRDVDRERLRLAKLHEIHSGDVMIVYNNCSISRY 71
           G++ R    Y+R    YR L V R L  D     L +  + E   G  M + +N  I+ +
Sbjct: 17  GQFKRKLRPYNRGLNTYRKLRVARKLSYDPSVRPLSINTVVERQHGSHMTLGSNSDITSF 76

Query: 72  IQCPRKDHGITVRRRDYIRIWQIGIYGRIKVNLAHIEGAMDTGISNITGVFTVALLRDKT 131
           ++ P +      R RDYI++  +   G I V +A  +  MD G S   GVF ++LL+D  
Sbjct: 77  VEYPVRGINGDGRSRDYIKLLHLSASGVINVKVASSDQVMDAG-SRHNGVFVMSLLQDMK 136

Query: 132 PYLPTGVELLPDFKELFGSLESSYGKLTVLPRHDGRYCIERVWQKNICVDRKSFEFPVKM 191
           P+LP GV  LP + ELFG   S+Y  + +L  H  R+ I    +K +     + + P K+
Sbjct: 137 PFLPDGVNSLPTYAELFGPYSSAYVNMHLLDSHKQRFRILGSVKKFVSCGMDAVDIPFKL 196

Query: 192 VLQYYNRRYAIWTSFKDTGDLHGGGTIETLQR 223
            L+  N RY +W SFKD  + + GG    + +
Sbjct: 197 ELKLSNGRYPLWASFKDAEEGNCGGNYRNIAK 227

[Close]

BLAST of Lag0005816 vs. NCBI nr
Match: ALI86616.1 (nuclear shuttle protein [Watermelon chlorotic stunt virus])

HSP 1 Score: 106.3 bits (264), Expect = 3.9e-19
Identity = 65/216 (30.09%), Postives = 100/216 (46.30%), Query Frame = 0


Query: 18  KTTYDRRRPQYRLPVRRALYRDVDRERLRLA-KLHE---------IHSGDVMIVYNNCSI 77
           + T  R+R QY  P +  L+R     R   A KLHE         +HSG    + N C +
Sbjct: 9   QVTRGRKRKQYSRPYKSGLFRRRQASRRLFAEKLHERLSRRCLEDVHSGPSYALMNQCDV 68

Query: 78  SRYIQCPRKD-HGITVRRRDYIRIWQIGIYGRIKVNLAHIEGAMDTGISNITGVFTVALL 137
           + Y+  P     G   R RD+I++  + + G I V     E   D   S + G+F + L+
Sbjct: 69  TSYVTYPILGLEGNGGRSRDFIKLMNVRVSGTINVTPLPAEPMSDR--SPMNGIFVILLI 128

Query: 138 RDKTPYLPTGVELLPDFKELFGSLESSYGKLTVLPRHDGRYCIERVWQKNICVDRKSFEF 197
            D+ P++P GV +LP FKELFG  E  YG   V      RY I  +W++ +  D  + + 
Sbjct: 129 VDRKPFVPEGVNVLPSFKELFGEYECVYGIPRVKENQRHRYRILGMWKQYVSGDDSAVQK 188

Query: 198 PVKMVLQYYNRRYAIWTSFKDTGDLHGGGTIETLQR 223
              +       RY +W +FKD   +  GG  + + +
Sbjct: 189 DFTLRRNVSGPRYNVWAAFKDIDQMSTGGNYKNVSK 222

[Close]

BLAST of Lag0005816 vs. NCBI nr
Match: ACL78777.1 (BV1 [Kudzu mosaic virus])

HSP 1 Score: 105.9 bits (263), Expect = 5.1e-19
Identity = 66/212 (31.13%), Postives = 105/212 (49.53%), Query Frame = 0


Query: 12  GEYARWKTTYDRRRPQYR-LPVRRALYRDVDRERLRLAKLHEIHSGDVMIVYNNCSISRY 71
           G++ R    Y+R    YR L V R L  D+    L +  + E   G  M + +N  I+ +
Sbjct: 17  GQFKRKLRPYNRGLNTYRKLRVARKLSYDLLFGPLTINTIVERQHGAHMALGSNSDITSF 76

Query: 72  IQCPRKDHGITVRRRDYIRIWQIGIYGRIKVNLAHIEGAMDTGISNITGVFTVALLRDKT 131
           +  P +      R RDYI++  +   G + V +A  +  MD G S   GVF + LL+D  
Sbjct: 77  VGYPVRGINGDGRSRDYIKLLHLSASGVVNVKVASADQVMDAG-SRYNGVFVMTLLQDMK 136

Query: 132 PYLPTGVELLPDFKELFGSLESSYGKLTVLPRHDGRYCIERVWQKNICVDRKSFEFPVKM 191
           P+LP GV  LP + ELFG   S+Y  + +L  H  R+ I    +K +     + + P K+
Sbjct: 137 PFLPDGVNSLPTYAELFGPYSSAYVNMHLLDSHKQRFRILGSVKKFVSCTMDAVDIPFKL 196

Query: 192 VLQYYNRRYAIWTSFKDTGDLHGGGTIETLQR 223
            ++  N RY +W SFKD  + + GG  + + +
Sbjct: 197 EVKLSNGRYPLWASFKDAEEGNCGGNYKNIAK 227

[Close]

BLAST of Lag0005816 vs. NCBI nr
Match: QAB47405.1 (BV1 protein [Watermelon chlorotic stunt virus] >QAB47407.1 BV1 protein [Watermelon chlorotic stunt virus] >CDO50351.1 Movement protein [Watermelon chlorotic stunt virus])

HSP 1 Score: 105.9 bits (263), Expect = 5.1e-19
Identity = 64/211 (30.33%), Postives = 99/211 (46.92%), Query Frame = 0


Query: 23  RRRPQYRLPVRRALYRDVDRERLRLA-KLHE---------IHSGDVMIVYNNCSISRYIQ 82
           R+R Q+  P +  L+R     R   A KLHE         +HSG    + N C ++ Y+ 
Sbjct: 14  RKRKQFSRPFKSGLFRRRQASRRLFAEKLHEKLSRRCLEDVHSGPSYALMNQCDVTSYVT 73

Query: 83  CPRKD-HGITVRRRDYIRIWQIGIYGRIKVNLAHIEGAMDTGISNITGVFTVALLRDKTP 142
            P     G   RRRD+I++  + + G I V     E   D   S + G+F + L+ D+ P
Sbjct: 74  FPILGLEGNGGRRRDFIKLMNVRVSGTINVTPLPAEPMSDR--SPMNGIFVILLIVDRKP 133

Query: 143 YLPTGVELLPDFKELFGSLESSYGKLTVLPRHDGRYCIERVWQKNICVDRKSFEFPVKMV 202
           ++P GV +LP FKELFG  E  YG   V      RY I  +W++ +  D  + +    + 
Sbjct: 134 FVPEGVNVLPSFKELFGEYECVYGIPRVKENQRHRYRILGMWKQYVSGDDSAVQKDFTLR 193

Query: 203 LQYYNRRYAIWTSFKDTGDLHGGGTIETLQR 223
                 RY +W +FKD   +  GG  + + +
Sbjct: 194 RNISGPRYNVWAAFKDIDQMSTGGNYKNVSK 222

[Close]

BLAST of Lag0005816 vs. NCBI nr
Match: ALI86589.1 (nuclear shuttle protein [Watermelon chlorotic stunt virus])

HSP 1 Score: 105.9 bits (263), Expect = 5.1e-19
Identity = 64/216 (29.63%), Postives = 101/216 (46.76%), Query Frame = 0


Query: 18  KTTYDRRRPQYRLPVRRALYRDVDRERLRLA-KLHE---------IHSGDVMIVYNNCSI 77
           + T  R+R QY  P +  L+R     R   A KLHE         +HSG    + N C +
Sbjct: 9   QVTRGRKRKQYSRPYKSGLFRRRQASRRLFAEKLHEKLSRRCLEDVHSGPSYALMNQCDV 68

Query: 78  SRYIQCPRKD-HGITVRRRDYIRIWQIGIYGRIKVNLAHIEGAMDTGISNITGVFTVALL 137
           + Y+  P     G   R RD+I++  + + G I V  +  E   D   S + G+F + L+
Sbjct: 69  TSYVTYPILGLEGNGGRSRDFIKLMNVRVSGTINVTPSPAEPMSDR--SPMNGIFVILLI 128

Query: 138 RDKTPYLPTGVELLPDFKELFGSLESSYGKLTVLPRHDGRYCIERVWQKNICVDRKSFEF 197
            D+ P++P GV +LP FK+LFG  E  YG   V      RY I  +W++ +  D  + + 
Sbjct: 129 VDRKPFVPEGVNVLPSFKDLFGEYECVYGIPRVKENQRHRYRILGMWKQYVSGDDSAVQK 188

Query: 198 PVKMVLQYYNRRYAIWTSFKDTGDLHGGGTIETLQR 223
              +       RY +W +FKD   +  GG  + + +
Sbjct: 189 DFTLRRNVSGPRYNVWAAFKDIDQMSTGGNYKNVSK 222

[Close]

BLAST of Lag0005816 vs. ExPASy Swiss-Prot
Match: Q9YPS8 (Nuclear shuttle protein OS=Mungbean yellow mosaic virus (strain Vigna) OX=223295 GN=BR1 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-19
Identity = 60/210 (28.57%), Postives = 107/210 (50.95%), Query Frame = 0


Query: 16  RWK-TTYDRRRPQYRLP--VRRALYRDVDRERLRLAKLHEIHSGDVMIVYNNCSISRYIQ 75
           RW+  T  R R ++  P   R+  Y  V+RE +R   + E+  G  M +  N  +S ++Q
Sbjct: 20  RWQPMTPSRGRLRHNKPSASRKLSYDRVERE-MRTNSIVEVQHGSHMSLEKNTDVSSFVQ 79

Query: 76  CPRKDHGITVRRRDYIRIWQIGIYGRIKVNLAHIEGAMDTGISNITGVFTVALLRDKTPY 135
            P +      R RDYI++ ++ + G I +  ++ +  M+ G   ++G+F + +L DK PY
Sbjct: 80  YPARGINGDGRCRDYIKLLKLDVSGVINIKSSNGDQDMEPG-DKLSGLFILTVLLDKKPY 139

Query: 136 LPTGVELLPDFKELFGSLESSYGKLTVLPRHDGRYCIERVWQKNICVDRKSFEFPVKMVL 195
           LP GV  LP F ELFG   ++Y  + +L     R+ +    +K +     +   P+K+ +
Sbjct: 140 LPEGVNKLPSFAELFGPYSAAYANMHLLDSQKPRFKVLGTIKKFVNCTPGTLYGPLKLNM 199

Query: 196 QYYNRRYAIWTSFKDTGDLHGGGTIETLQR 223
               R+  +WT+FKD    + GG  + + +
Sbjct: 200 PLSRRKCPLWTTFKDPDQGNCGGNYKNISK 227

[Close]

BLAST of Lag0005816 vs. ExPASy Swiss-Prot
Match: P27268 (Nuclear shuttle protein OS=Potato yellow mosaic virus (isolate Venezuela) OX=223310 GN=BR1 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.7e-18
Identity = 58/206 (28.16%), Postives = 105/206 (50.97%), Query Frame = 0


Query: 3   TIRRSKVARGEYARWKTTYDRRRPQYRLPVRRALYRDVDRERLRLAKLHEIHSGDVMIVY 62
           T  R+ + R + + +K    +RRP   + +       VD   ++  ++HE   G    + 
Sbjct: 17  TYPRNSLIR-QQSLFKRNVSKRRPFQTVKM-------VDDSMMKAQRIHENQYGPDFSLA 76

Query: 63  NNCSISRYIQCPRKDHGITVRRRDYIRIWQIGIYGRIKVNLAHIEGAMDTGISNITGVFT 122
           +N ++S +I  P     +  R R YI++ ++   G +KV   H+E  MD  +    GVF+
Sbjct: 77  HNTAVSTFISYPDIAKSLPNRTRSYIKLKRLRFKGIVKVERVHVEVNMDCSVPKTEGVFS 136

Query: 123 VALLRDKTPYL-PTGVELLPDFKELFGSLESSYGKLTVLPRHDGRYCIERVWQKNICVDR 182
           + ++ D+ P+L P+G   LP F ELFG+   S+G L ++P    R+ I  V ++ I V++
Sbjct: 137 LVIVVDRKPHLGPSGG--LPTFDELFGARIHSHGNLAIVPSLKDRFYIRHVLKRVISVEK 196

Query: 183 KSFEFPVKMVLQYYNRRYAIWTSFKD 208
            +    ++ V+   +RR+  W  FKD
Sbjct: 197 DTMMVDIEGVVALSSRRFNCWAGFKD 212

[Close]

BLAST of Lag0005816 vs. ExPASy Swiss-Prot
Match: P03564 (Nuclear shuttle protein OS=Tomato golden mosaic virus (strain Yellow vein) OX=223341 GN=BR1 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-17
Identity = 57/193 (29.53%), Postives = 100/193 (51.81%), Query Frame = 0


Query: 19  TTYDRRRPQYRLPVRRALYRDV---DRERLRLAKLHEIHSGDVMIVYNNCSISRYIQCPR 78
           +T  R R   R+  +R   + V   D  ++   ++HE   G   ++ +N +IS +I  P 
Sbjct: 22  STGKRSRNVSRIDFKRRSSKYVHGNDDSKMANQRIHENQFGPEFVMVHNTAISTFITFPS 81

Query: 79  KDHGITVRRRDYIRIWQIGIYGRIKVNLAHIEGAMDTGISNITGVFTVALLRDKTPYL-P 138
                  R R YI++ ++   G +K+   H++ +MD     I GVF++ ++ D+ P+L P
Sbjct: 82  LGKTEPSRSRSYIKLKRLRFKGTVKIERVHVDLSMDGPSPKIEGVFSLVVVVDRQPHLSP 141

Query: 139 TGVELLPDFKELFGSLESSYGKLTVLPRHDGRYCIERVWQKNICVDRKSFEFPVKMVLQY 198
           TG   L  F ELFG+   S+G L V      R+ I  V+++ I V++ S    ++ +  +
Sbjct: 142 TG--CLHTFDELFGARIHSHGNLAVSSALKDRFYIRHVFKRVISVEKDSTMIDLEGMTSF 201

Query: 199 YNRRYAIWTSFKD 208
            NRR+  W++FKD
Sbjct: 202 TNRRFNCWSAFKD 212

[Close]

BLAST of Lag0005816 vs. ExPASy Swiss-Prot
Match: Q96706 (Nuclear shuttle protein OS=Cabbage leaf curl virus (isolate Jamaica) OX=345184 GN=BR1 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.0e-17
Identity = 48/167 (28.74%), Postives = 86/167 (51.50%), Query Frame = 0


Query: 41  DRERLRLAKLHEIHSGDVMIVYNNCSISRYIQCPRKDHGITVRRRDYIRIWQIGIYGRIK 100
           D  +++L ++HE   G   ++ +N ++S +I  P        R R YI++ ++   G +K
Sbjct: 47  DEPKMKLQRIHENQYGPEFVMTHNSALSTFINFPVLGKIEPNRSRSYIKLNRLSFKGTVK 106

Query: 101 VNLAHIEGAMDTGISNITGVFTVALLRDKTPYLPTGVELLPDFKELFGSLESSYGKLTVL 160
           +   H +  MD  IS I GVF++ ++ D+ P+L +    L  F E+FG+   S+G L + 
Sbjct: 107 IERVHADVNMDGVISKIEGVFSLVIVVDRKPHL-SSTGGLHTFDEIFGARIHSHGNLAIT 166

Query: 161 PRHDGRYCIERVWQKNICVDRKSFEFPVKMVLQYYNRRYAIWTSFKD 208
           P    RY +  V ++ + V++ +    ++      NRRY  W SF D
Sbjct: 167 PGLKDRYYVLHVLKRVLSVEKDTLMVDLEGSTTISNRRYNCWASFND 212

[Close]

BLAST of Lag0005816 vs. ExPASy Swiss-Prot
Match: P14970 (Nuclear shuttle protein OS=African cassava mosaic virus (isolate Nigerian) OX=222073 GN=BR1 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.0e-17
Identity = 60/200 (30.00%), Postives = 92/200 (46.00%), Query Frame = 0


Query: 25  RPQYRLPVRRALYRDVDRERLRLAKLHEIHSGDVMIVYNNCSISRYIQCPRKDHGITVRR 84
           RP  R   RR  Y  V+R  +      + H GDV  +  N S + ++  P +      R 
Sbjct: 35  RPSVR---RRLTYEPVERPLVHNVLCEKQH-GDVFNLQQNTSYTSFVTYPSRGPSGDGRS 94

Query: 85  RDYIRIWQIGIYGRIKVNLAHIEGAMDTGISNITGVFTVALLRDKTPYLPTGVELLPDFK 144
           RDYI++  + + G I       +  M+    ++ GVF  +L+ D  PYLP GV+ LP F+
Sbjct: 95  RDYIKLQSMSVSGVIHAKANCNDDPMEVS-HDVNGVFVFSLIMDTKPYLPAGVQALPTFE 154

Query: 145 ELFGSLESSYGKLTVLPRHDGRYCIERVWQKNI--CVDRKSFEFPVKMVLQYYNRRYAIW 204
           ELFG+  + Y  L +L     RY +    ++ +    D K  +F     L    RRY IW
Sbjct: 155 ELFGAYSACYVNLRLLNNQQHRYRVLHSVKRFVSSAGDTKVSQFRFNKRLS--TRRYNIW 214

Query: 205 TSFKDTGDLHGGGTIETLQR 223
            SF D   ++ GG    + +
Sbjct: 215 ASFHDGDLVNAGGNYRNISK 227

[Close]

BLAST of Lag0005816 vs. ExPASy TrEMBL
Match: E9LZR0 (Nuclear shuttle protein OS=Kudzu mosaic virus OX=390437 GN=BV1 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.3e-20
Identity = 68/212 (32.08%), Postives = 105/212 (49.53%), Query Frame = 0


Query: 12  GEYARWKTTYDRRRPQYR-LPVRRALYRDVDRERLRLAKLHEIHSGDVMIVYNNCSISRY 71
           G++ R    Y+R    YR L V R L  D     L +  + E   G  M + +N  I+ +
Sbjct: 17  GQFKRKLRPYNRGLNTYRKLRVARKLSYDPSVRPLSINTVVERQHGSHMTLGSNSDITSF 76

Query: 72  IQCPRKDHGITVRRRDYIRIWQIGIYGRIKVNLAHIEGAMDTGISNITGVFTVALLRDKT 131
           ++ P +      R RDYI++  +   G I V +A  +  MD G S   GVF ++LL+D  
Sbjct: 77  VEYPVRGINGDGRSRDYIKLLHLSASGVINVKVASSDQVMDAG-SRHNGVFVMSLLQDMK 136

Query: 132 PYLPTGVELLPDFKELFGSLESSYGKLTVLPRHDGRYCIERVWQKNICVDRKSFEFPVKM 191
           P+LP GV  LP + ELFG   S+Y  + +L  H  R+ I    +K +     + + P K+
Sbjct: 137 PFLPDGVNSLPTYAELFGPYSSAYVNMHLLDSHKQRFRILGSVKKFVSCGMDAVDIPFKL 196

Query: 192 VLQYYNRRYAIWTSFKDTGDLHGGGTIETLQR 223
            L+  N RY +W SFKD  + + GG    + +
Sbjct: 197 ELKLSNGRYPLWASFKDAEEGNCGGNYRNIAK 227

[Close]

BLAST of Lag0005816 vs. ExPASy TrEMBL
Match: A0A0P0CFM5 (Nuclear shuttle protein OS=Watermelon chlorotic stunt virus OX=35341 GN=BV1 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-19
Identity = 65/216 (30.09%), Postives = 100/216 (46.30%), Query Frame = 0


Query: 18  KTTYDRRRPQYRLPVRRALYRDVDRERLRLA-KLHE---------IHSGDVMIVYNNCSI 77
           + T  R+R QY  P +  L+R     R   A KLHE         +HSG    + N C +
Sbjct: 9   QVTRGRKRKQYSRPYKSGLFRRRQASRRLFAEKLHERLSRRCLEDVHSGPSYALMNQCDV 68

Query: 78  SRYIQCPRKD-HGITVRRRDYIRIWQIGIYGRIKVNLAHIEGAMDTGISNITGVFTVALL 137
           + Y+  P     G   R RD+I++  + + G I V     E   D   S + G+F + L+
Sbjct: 69  TSYVTYPILGLEGNGGRSRDFIKLMNVRVSGTINVTPLPAEPMSDR--SPMNGIFVILLI 128

Query: 138 RDKTPYLPTGVELLPDFKELFGSLESSYGKLTVLPRHDGRYCIERVWQKNICVDRKSFEF 197
            D+ P++P GV +LP FKELFG  E  YG   V      RY I  +W++ +  D  + + 
Sbjct: 129 VDRKPFVPEGVNVLPSFKELFGEYECVYGIPRVKENQRHRYRILGMWKQYVSGDDSAVQK 188

Query: 198 PVKMVLQYYNRRYAIWTSFKDTGDLHGGGTIETLQR 223
              +       RY +W +FKD   +  GG  + + +
Sbjct: 189 DFTLRRNVSGPRYNVWAAFKDIDQMSTGGNYKNVSK 222

[Close]

BLAST of Lag0005816 vs. ExPASy TrEMBL
Match: Q9Q1R3 (Nuclear shuttle protein OS=Watermelon chlorotic stunt virus-[IR] OX=223362 GN=BV1 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-19
Identity = 65/216 (30.09%), Postives = 100/216 (46.30%), Query Frame = 0


Query: 18  KTTYDRRRPQYRLPVRRALYRDVDRERLRLA-KLHE---------IHSGDVMIVYNNCSI 77
           + T  R+R Q+  P +  L+R     R   A KLHE         +HSG    + N C +
Sbjct: 9   QVTRGRKRKQFSRPFKSGLFRRRQASRRLFAEKLHEKLSRRCLEDVHSGPSYALMNQCDV 68

Query: 78  SRYIQCPRKD-HGITVRRRDYIRIWQIGIYGRIKVNLAHIEGAMDTGISNITGVFTVALL 137
           + Y+  P     G   R RD+I++  + + G I V     E   D   S + G+F + L+
Sbjct: 69  TSYVTYPILGLEGNGGRSRDFIKLMNVRVSGTINVTPLPAEPMSDR--SPMNGIFVILLI 128

Query: 138 RDKTPYLPTGVELLPDFKELFGSLESSYGKLTVLPRHDGRYCIERVWQKNICVDRKSFEF 197
            DK P++P GV +LP FKELFG  E  YG   V      RY I  +W++ +  D  + + 
Sbjct: 129 VDKKPFVPEGVNVLPSFKELFGEYECVYGIPRVKENQRHRYRILGMWKQYVSGDDSAVQK 188

Query: 198 PVKMVLQYYNRRYAIWTSFKDTGDLHGGGTIETLQR 223
              +       RY +W +FKD   +  GG  + + +
Sbjct: 189 DFTLRRNISGPRYNVWAAFKDIDQMSTGGNYKNVSK 222

[Close]

BLAST of Lag0005816 vs. ExPASy TrEMBL
Match: B8YJH7 (Nuclear shuttle protein OS=Kudzu mosaic virus OX=390437 GN=BV1 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-19
Identity = 66/212 (31.13%), Postives = 105/212 (49.53%), Query Frame = 0


Query: 12  GEYARWKTTYDRRRPQYR-LPVRRALYRDVDRERLRLAKLHEIHSGDVMIVYNNCSISRY 71
           G++ R    Y+R    YR L V R L  D+    L +  + E   G  M + +N  I+ +
Sbjct: 17  GQFKRKLRPYNRGLNTYRKLRVARKLSYDLLFGPLTINTIVERQHGAHMALGSNSDITSF 76

Query: 72  IQCPRKDHGITVRRRDYIRIWQIGIYGRIKVNLAHIEGAMDTGISNITGVFTVALLRDKT 131
           +  P +      R RDYI++  +   G + V +A  +  MD G S   GVF + LL+D  
Sbjct: 77  VGYPVRGINGDGRSRDYIKLLHLSASGVVNVKVASADQVMDAG-SRYNGVFVMTLLQDMK 136

Query: 132 PYLPTGVELLPDFKELFGSLESSYGKLTVLPRHDGRYCIERVWQKNICVDRKSFEFPVKM 191
           P+LP GV  LP + ELFG   S+Y  + +L  H  R+ I    +K +     + + P K+
Sbjct: 137 PFLPDGVNSLPTYAELFGPYSSAYVNMHLLDSHKQRFRILGSVKKFVSCTMDAVDIPFKL 196

Query: 192 VLQYYNRRYAIWTSFKDTGDLHGGGTIETLQR 223
            ++  N RY +W SFKD  + + GG  + + +
Sbjct: 197 EVKLSNGRYPLWASFKDAEEGNCGGNYKNIAK 227

[Close]

BLAST of Lag0005816 vs. ExPASy TrEMBL
Match: Q9Q1S0 (Nuclear shuttle protein OS=Watermelon chlorotic stunt virus-[SD] OX=223363 GN=BV1 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-19
Identity = 62/214 (28.97%), Postives = 100/214 (46.73%), Query Frame = 0


Query: 20  TYDRRRPQYRLPVRRALYR----------DVDRERLRLAKLHEIHSGDVMIVYNNCSISR 79
           T  R+R Q+  P +  L+R          +  RE+L    L ++HSG    + N C ++ 
Sbjct: 11  TRGRKRKQFSRPFKSGLFRRRQASRRLFAEKQREKLSRRCLEDVHSGPSYALMNQCDVTS 70

Query: 80  YIQCPRKD-HGITVRRRDYIRIWQIGIYGRIKVNLAHIEGAMDTGISNITGVFTVALLRD 139
           Y+  P     G   R RD+I++  + + G I V     E   D   S + G+F + L+ D
Sbjct: 71  YVTYPILGLEGNGGRSRDFIKLMNVRVSGTINVTPLAAEPMSDR--SPMNGIFVLLLIVD 130

Query: 140 KTPYLPTGVELLPDFKELFGSLESSYGKLTVLPRHDGRYCIERVWQKNICVDRKSFEFPV 199
           + P++P GV +LP FKELFG  E  YG   V      RY I  +W++ +  D  + +   
Sbjct: 131 RKPFVPEGVNVLPSFKELFGEYECVYGIPRVKENQRHRYRILGMWKQYVSGDDSAVQKDF 190

Query: 200 KMVLQYYNRRYAIWTSFKDTGDLHGGGTIETLQR 223
            +       RY +W +FKD   +  GG  + + +
Sbjct: 191 TLRRNLSGPRYNVWAAFKDMDQMSTGGNYKNVSK 222

The following BLAST results are available for this feature:

BLAST of Lag0005816 vs. NCBI nr


Match Name	E-value	Identity	Description
ADW24247.1	4.6e-20	32.08	NSP protein [Kudzu mosaic virus]	[more]
ALI86616.1	3.9e-19	30.09	nuclear shuttle protein [Watermelon chlorotic stunt virus]	[more]
ACL78777.1	5.1e-19	31.13	BV1 [Kudzu mosaic virus]	[more]
QAB47405.1	5.1e-19	30.33	BV1 protein [Watermelon chlorotic stunt virus] >QAB47407.1 BV1 protein [Watermel...	[more]
ALI86589.1	5.1e-19	29.63	nuclear shuttle protein [Watermelon chlorotic stunt virus]	[more]

BLAST of Lag0005816 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9YPS8	1.1e-19	28.57	Nuclear shuttle protein OS=Mungbean yellow mosaic virus (strain Vigna) OX=223295...	[more]
P27268	2.7e-18	28.16	Nuclear shuttle protein OS=Potato yellow mosaic virus (isolate Venezuela) OX=223...	[more]
P03564	2.2e-17	29.53	Nuclear shuttle protein OS=Tomato golden mosaic virus (strain Yellow vein) OX=22...	[more]
Q96706	5.0e-17	28.74	Nuclear shuttle protein OS=Cabbage leaf curl virus (isolate Jamaica) OX=345184 G...	[more]
P14970	5.0e-17	30.00	Nuclear shuttle protein OS=African cassava mosaic virus (isolate Nigerian) OX=22...	[more]

BLAST of Lag0005816 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E9LZR0	2.3e-20	32.08	Nuclear shuttle protein OS=Kudzu mosaic virus OX=390437 GN=BV1 PE=3 SV=1	[more]
A0A0P0CFM5	1.9e-19	30.09	Nuclear shuttle protein OS=Watermelon chlorotic stunt virus OX=35341 GN=BV1 PE=3...	[more]
Q9Q1R3	2.5e-19	30.09	Nuclear shuttle protein OS=Watermelon chlorotic stunt virus-[IR] OX=223362 GN=BV...	[more]
B8YJH7	2.5e-19	31.13	Nuclear shuttle protein OS=Kudzu mosaic virus OX=390437 GN=BV1 PE=3 SV=1	[more]
Q9Q1S0	2.5e-19	28.97	Nuclear shuttle protein OS=Watermelon chlorotic stunt virus-[SD] OX=223363 GN=BV...	[more]

BLAST of Lag0005816 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001530	Geminivirus BR1 coat protein	PRINTS	PR00225	GEMCOATBR1	coord: 140..157 score: 50.0 coord: 166..183 score: 24.73 coord: 52..70 score: 24.28 coord: 194..209 score: 44.15 coord: 97..111 score: 28.39 coord: 71..90 score: 29.52
IPR000263	Geminivirus AR1/BR1 coat protein	PFAM	PF00844	Gemini_coat	coord: 14..218 e-value: 4.6E-22 score: 78.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005816.1	Lag0005816.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051027	DNA transport
cellular_component	GO:0043657	host cell
cellular_component	GO:0019028	viral capsid
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0005198	structural molecule activity