Lag0005772 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005772
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr6: 29432244 .. 29433122 (-)
RNA-Seq Expression	Lag0005772
Synteny	Lag0005772

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATTCTACTGCCAGAGATCTCAATTCTTCTATTTTTCTTCTTTCAAATATTTGTAATCTGGTCTCAATTCGGCTAGATTCTACAAATTTTGTTCTATGGAAGCATCAGTTGCGATCAATCTTGAAGGCGCACAAATTGTTTGGATTCATTGATGGATCCTTTCCGAAACCGGCTTCATCTGTACGTACTACCACTTCTTCTTCGTCTACTGATTCTTCATCTACTGTTTCTCAGCCAAATCCACAATATGAGGACTGGATTGCCAAAGATCACGCACTACAAACTCAGATTAATGCAACTCTTTCTCCCACTGCATTGGCCTATATTGTTGGTTGTGAGACTGCACAACAAATGTGGGAAACTCTAGAGAAACACTACTCTTCTACTTCGCGAACAAATGTCGTTAACCTAAAATCAGAGTTGCAAACTATTGCGAAGAAATCTGGTGAAAGCATCACACAATACATCCAACGCATCAAGGAGTTGAAAGATAAATTGGCCAATGTTTCCGTCACGATTCATGTAGAGGATCTGGTGATCTACACGATGAGCGGCTTACCTGCTGAATACAACACTTCCAAGACGTCTCTGCGTACTAGATCTCAGTCGATCACCTTCGAAGAACTTCATGTTCTTCTTGTTTCTGAAGAGTCTGCCCTTGAGAAGCAGATTAAACGTGATGAGGCCTTTGCTCAGCCTACTGCTTTACTTGCACAAACTTCTTCAAATCGCAATCAGAACTACAATCAAATATACCTCGAGGTCGTGGAAATTCTGGAAATTCTCGAGGCCGTGGAAGAGGTTTTGGTCGTCCTCCTTTTTGTAATTCTGGTCGTGGACGTATACCTGGACATCCTGTTGGTAATACTCTGA

mRNA sequence

ATGGCTGATTCTACTGCCAGAGATCTCAATTCTTCTATTTTTCTTCTTTCAAATATTTGTAATCTGGTCTCAATTCGGCTAGATTCTACAAATTTTGTTCTATGGAAGCATCAGTTGCGATCAATCTTGAAGGCGCACAAATTGTTTGGATTCATTGATGGATCCTTTCCGAAACCGGCTTCATCTGTACGTACTACCACTTCTTCTTCGTCTACTGATTCTTCATCTACTGTTTCTCAGCCAAATCCACAATATGAGGACTGGATTGCCAAAGATCACGCACTACAAACTCAGATTAATGCAACTCTTTCTCCCACTGCATTGGCCTATATTGTTGGTTGTGAGACTGCACAACAAATGTGGGAAACTCTAGAGAAACACTACTCTTCTACTTCGCGAACAAATGTCGTTAACCTAAAATCAGAGTTGCAAACTATTGCGAAGAAATCTGGTGAAAGCATCACACAATACATCCAACGCATCAAGGAGTTGAAAGATAAATTGGCCAATGTTTCCGTCACGATTCATGTAGAGGATCTGGTGATCTACACGATGAGCGGCTTACCTGCTGAATACAACACTTCCAAGACGTCTCTGCGTACTAGATCTCAGTCGATCACCTTCGAAGAACTTCATGTTCTTCTTGTTTCTGAAGAGTCTGCCCTTGAGAAGCAGATTAAACGTGATGAGGCCTTTGCTCAGCCTACTGCTTTACTTGCACAAACTTCTTCAAATCGCAATCAGAACTACAATCAAATATACCTCGAGGTCGTGGAAATTCTGGAAATTCTCGAGGCCGTGGAAGAGGTTTTGGTCGTCCTCCTTTTTGTAATTCTGGTCGTGGACGTATACCTGGACATCCTGTTGGTAATACTCTGA

Coding sequence (CDS)

ATGGCTGATTCTACTGCCAGAGATCTCAATTCTTCTATTTTTCTTCTTTCAAATATTTGTAATCTGGTCTCAATTCGGCTAGATTCTACAAATTTTGTTCTATGGAAGCATCAGTTGCGATCAATCTTGAAGGCGCACAAATTGTTTGGATTCATTGATGGATCCTTTCCGAAACCGGCTTCATCTGTACGTACTACCACTTCTTCTTCGTCTACTGATTCTTCATCTACTGTTTCTCAGCCAAATCCACAATATGAGGACTGGATTGCCAAAGATCACGCACTACAAACTCAGATTAATGCAACTCTTTCTCCCACTGCATTGGCCTATATTGTTGGTTGTGAGACTGCACAACAAATGTGGGAAACTCTAGAGAAACACTACTCTTCTACTTCGCGAACAAATGTCGTTAACCTAAAATCAGAGTTGCAAACTATTGCGAAGAAATCTGGTGAAAGCATCACACAATACATCCAACGCATCAAGGAGTTGAAAGATAAATTGGCCAATGTTTCCGTCACGATTCATGTAGAGGATCTGGTGATCTACACGATGAGCGGCTTACCTGCTGAATACAACACTTCCAAGACGTCTCTGCGTACTAGATCTCAGTCGATCACCTTCGAAGAACTTCATGTTCTTCTTGTTTCTGAAGAGTCTGCCCTTGAGAAGCAGATTAAACGTGATGAGGCCTTTGCTCAGCCTACTGCTTTACTTGCACAAACTTCTTCAAATCGCAATCAGAACTACAATCAAATATACCTCGAGGTCGTGGAAATTCTGGAAATTCTCGAGGCCGTGGAAGAGGTTTTGGTCGTCCTCCTTTTTGTAATTCTGGTCGTGGACGTATACCTGGACATCCTGTTGGTAATACTCTGA

Protein sequence

MADSTARDLNSSIFLLSNICNLVSIRLDSTNFVLWKHQLRSILKAHKLFGFIDGSFPKPASSVRTTTSSSSTDSSSTVSQPNPQYEDWIAKDHALQTQINATLSPTALAYIVGCETAQQMWETLEKHYSSTSRTNVVNLKSELQTIAKKSGESITQYIQRIKELKDKLANVSVTIHVEDLVIYTMSGLPAEYNTSKTSLRTRSQSITFEELHVLLVSEESALEKQIKRDEAFAQPTALLAQTSSNRNQNYNQIYLEVVEILEILEAVEEVLVVLLFVILVVDVYLDILLVIL

Homology

[Close]

BLAST of Lag0005772 vs. NCBI nr
Match: XP_022150845.1 (uncharacterized protein LOC111018892 [Momordica charantia])

HSP 1 Score: 287.3 bits (734), Expect = 1.4e-73
Identity = 153/247 (61.94%), Postives = 194/247 (78.54%), Query Frame = 0


Query: 4   STARDLNSSIFLLSNICNLVSIRLDSTNFVLWKHQLRSILKAHKLFGFIDGSFPKPASSV 63
           +T +DL+S IFLLSNICNLVSIRLDST+F+LWK QL +ILKAHKLFGFIDGS   P S  
Sbjct: 28  NTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAP-SQF 87

Query: 64  RTTTSSSSTDSSSTVSQP--NPQYEDWIAKDHALQTQINATLSPTALAYIVGCETAQQMW 123
             ++S + +  ++T S P  NP +EDWIAKD AL T INATLS  ALAY+V   T++Q+W
Sbjct: 88  LASSSETESQPTTTTSLPVINPHFEDWIAKDQALMTLINATLSAEALAYVVRSGTSKQVW 147

Query: 124 ETLEKHYSSTSRTNVVNLKSELQTIAKKSGESITQYIQRIKELKDKLANVSVTIHVEDLV 183
           E LEKHYSS SRTNVVNLKS+LQ+I KK+ ESI  Y++RIKE+KDK ANVS+TI+ E L+
Sbjct: 148 EVLEKHYSSNSRTNVVNLKSDLQSIVKKTEESIDAYVKRIKEIKDKFANVSITINDEYLL 207

Query: 184 IYTMSGLPAEYNTSKTSLRTRSQSITFEELHVLLVSEESALEKQIKRDEAFAQPTALLAQ 243
           IY ++GL  EYNT  TS+RTR+QS++FEELHV + SEESA+EKQ+KR++   QP AL A 
Sbjct: 208 IYALNGLSTEYNTLSTSMRTRAQSVSFEELHVFMKSEESAIEKQMKREDLVTQPNALFAS 267

Query: 244 TSSNRNQ 249
           +  ++N+
Sbjct: 268 SPQSQNR 273

[Close]

BLAST of Lag0005772 vs. NCBI nr
Match: XP_008448007.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo])

HSP 1 Score: 285.8 bits (730), Expect = 4.2e-73
Identity = 157/243 (64.61%), Postives = 189/243 (77.78%), Query Frame = 0


Query: 2   ADSTARDLNSSIFLLSNICNLVSIRLDSTNFVLWKHQLRSILKAHKLFGFIDGSFPKPAS 61
           + S  +D  S IFLLSNICNL+S+RLDSTNFVLWK QL +ILKAHKL+GFIDG+ P P  
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPP- 68

Query: 62  SVRTTTSSSSTDSSSTVSQPNPQYEDWIAKDHALQTQINATLSPTALAYIVGCETAQQMW 121
             RT  SSS   +S+   Q NP YEDWIAKD AL T INATLSP ALAY+VG  +++Q+W
Sbjct: 69  --RTNNSSS---TSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVW 128

Query: 122 ETLEKHYSSTSRTNVVNLKSELQTIAKKSGESITQYIQRIKELKDKLANVSVTIHVEDLV 181
           + L K YSS SR+NVVNLKS+LQTI KK  ESI  YI+RIKE+KDKLANVS  I+ EDL+
Sbjct: 129 DVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLL 188

Query: 182 IYTMSGLPAEYNTSKTSLRTRSQSITFEELHVLLVSEESALEKQIKRDEAFAQPTALLAQ 241
           IY ++GLP EYNT +TS+RTRSQ +TFEELHVLL +EESAL KQ K D+++ QPT LL+ 
Sbjct: 189 IYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSS 245

Query: 242 TSS 245
           + S
Sbjct: 249 SQS 245

[Close]

BLAST of Lag0005772 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo])

HSP 1 Score: 285.8 bits (730), Expect = 4.2e-73
Identity = 157/243 (64.61%), Postives = 189/243 (77.78%), Query Frame = 0


Query: 2   ADSTARDLNSSIFLLSNICNLVSIRLDSTNFVLWKHQLRSILKAHKLFGFIDGSFPKPAS 61
           + S  +D  S IFLLSNICNL+S+RLDSTNFVLWK QL +ILKAHKL+GFIDG+ P P  
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPP- 68

Query: 62  SVRTTTSSSSTDSSSTVSQPNPQYEDWIAKDHALQTQINATLSPTALAYIVGCETAQQMW 121
             RT  SSS   +S+   Q NP YEDWIAKD AL T INATLSP ALAY+VG  +++Q+W
Sbjct: 69  --RTNNSSS---TSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVW 128

Query: 122 ETLEKHYSSTSRTNVVNLKSELQTIAKKSGESITQYIQRIKELKDKLANVSVTIHVEDLV 181
           + L K YSS SR+NVVNLKS+LQTI KK  ESI  YI+RIKE+KDKLANVS  I+ EDL+
Sbjct: 129 DVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLL 188

Query: 182 IYTMSGLPAEYNTSKTSLRTRSQSITFEELHVLLVSEESALEKQIKRDEAFAQPTALLAQ 241
           IY ++GLP EYNT +TS+RTRSQ +TFEELHVLL +EESAL KQ K D+++ QPT LL+ 
Sbjct: 189 IYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSS 245

Query: 242 TSS 245
           + S
Sbjct: 249 SQS 245

[Close]

BLAST of Lag0005772 vs. NCBI nr
Match: KAA0049700.1 (T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa])

HSP 1 Score: 285.8 bits (730), Expect = 4.2e-73
Identity = 157/243 (64.61%), Postives = 189/243 (77.78%), Query Frame = 0


Query: 2   ADSTARDLNSSIFLLSNICNLVSIRLDSTNFVLWKHQLRSILKAHKLFGFIDGSFPKPAS 61
           + S  +D  S IFLLSNICNL+S+RLDSTNFVLWK QL +ILKAHKL+GFIDG+ P P  
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPP- 68

Query: 62  SVRTTTSSSSTDSSSTVSQPNPQYEDWIAKDHALQTQINATLSPTALAYIVGCETAQQMW 121
             RT  SSS   +S+   Q NP YEDWIAKD AL T INATLSP ALAY+VG  +++Q+W
Sbjct: 69  --RTNNSSS---TSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVW 128

Query: 122 ETLEKHYSSTSRTNVVNLKSELQTIAKKSGESITQYIQRIKELKDKLANVSVTIHVEDLV 181
           + L K YSS SR+NVVNLKS+LQTI KK  ESI  YI+RIKE+KDKLANVS  I+ EDL+
Sbjct: 129 DVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLL 188

Query: 182 IYTMSGLPAEYNTSKTSLRTRSQSITFEELHVLLVSEESALEKQIKRDEAFAQPTALLAQ 241
           IY ++GLP EYNT +TS+RTRSQ +TFEELHVLL +EESAL KQ K D+++ QPT LL+ 
Sbjct: 189 IYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSS 245

Query: 242 TSS 245
           + S
Sbjct: 249 SQS 245

[Close]

BLAST of Lag0005772 vs. NCBI nr
Match: KAE8645659.1 (hypothetical protein Csa_020439 [Cucumis sativus])

HSP 1 Score: 285.8 bits (730), Expect = 4.2e-73
Identity = 155/243 (63.79%), Postives = 187/243 (76.95%), Query Frame = 0


Query: 2   ADSTARDLNSSIFLLSNICNLVSIRLDSTNFVLWKHQLRSILKAHKLFGFIDGSFPKPAS 61
           + S  +D  S IFLLSNICNL+S+RLDSTNFVLWK QL +ILKAHKLFGF+DG+ P P +
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLFGFVDGTNPCPQT 68

Query: 62  SVRTTTSSSSTDSSSTVSQPNPQYEDWIAKDHALQTQINATLSPTALAYIVGCETAQQMW 121
           S  TT        S+   Q NP YEDWIAKD AL T INATLSP ALAY+VG  +++Q+W
Sbjct: 69  SPSTT--------STVPPQTNPLYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVW 128

Query: 122 ETLEKHYSSTSRTNVVNLKSELQTIAKKSGESITQYIQRIKELKDKLANVSVTIHVEDLV 181
           + L K YSS SR+NVVNLKS+LQTI KK  ESI  YI+RIKE+KDKLANVS  I+ EDL+
Sbjct: 129 DVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLL 188

Query: 182 IYTMSGLPAEYNTSKTSLRTRSQSITFEELHVLLVSEESALEKQIKRDEAFAQPTALLAQ 241
           IY ++GLP EYNT +TS+RTRSQ +TFEELHVLL +EESAL KQ K D+++ QPT LL+ 
Sbjct: 189 IYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKCDDSYNQPTVLLSS 243

Query: 242 TSS 245
           + S
Sbjct: 249 SQS 243

[Close]

BLAST of Lag0005772 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.2e-15
Identity = 67/249 (26.91%), Postives = 121/249 (48.59%), Query Frame = 0


Query: 9   LNSSIFLLSNICNLVSIRLDSTNFVLWKHQLRSILKAHKLFGFIDGSFPKPASSVRTTTS 68
           LN++  L  N+ N+   +L STN+++W  Q+ ++   ++L GF+DGS   P +++     
Sbjct: 10  LNNTSILNVNMSNVT--KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATI----- 69

Query: 69  SSSTDSSSTVSQPNPQYEDWIAKDHALQTQINATLSPTALAYIVGCETAQQMWETLEKHY 128
              TD++  V   NP Y  W  +D  + + +   +S +    +    TA Q+WETL K Y
Sbjct: 70  --GTDAAPRV---NPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIY 129

Query: 129 SSTSRTNVVNLKSELQTIAKKSGESITQYIQRIKELKDKLANVSVTIHVEDLVIYTMSGL 188
           ++ S  +V  L+++L+   K + ++I  Y+Q +    D+LA +   +  ++ V   +  L
Sbjct: 130 ANPSYGHVTQLRTQLKQWTKGT-KTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENL 189

Query: 189 PAEYNTSKTSLRTRSQSITFEELHVLLVSEESALEKQIKRDEAFAQPTALLA-----QTS 248
           P EY      +  +    T  E+H  L++ ES   K +    A   P    A      T+
Sbjct: 190 PEEYKPVIDQIAAKDTPPTLTEIHERLLNHES---KILAVSSATVIPITANAVSHRNTTT 242

Query: 249 SNRNQNYNQ 253
           +N N N N+
Sbjct: 250 TNNNNNGNR 242

[Close]

BLAST of Lag0005772 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-12
Identity = 58/227 (25.55%), Postives = 99/227 (43.61%), Query Frame = 0


Query: 26  RLDSTNFVLWKHQLRSILKAHKLFGFIDGSFPKPASSVRTTTSSSSTDSSSTVSQPNPQY 85
           +L STN+++W  Q+ ++   ++L GF+DGS P P +++ T            V + NP Y
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGT----------DAVPRVNPDY 84

Query: 86  EDWIAKDHALQTQINATLSPTALAYIVGCETAQQMWETLEKHYSSTSRTNVVNLKSELQT 145
             W  +D  + + I   +S +    +    TA Q+WETL K Y++ S  +V  L+     
Sbjct: 85  TRWRRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLR----- 144

Query: 146 IAKKSGESITQYIQRIKELKDKLANVSVTIHVEDLVIYTMSGLPAEYNTSKTSLRTRSQS 205
                      +I R     D+LA +   +  ++ V   +  LP +Y      +  +   
Sbjct: 145 -----------FITRF----DQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTP 204

Query: 206 ITFEELHVLLVSEESALEKQIKRDEAFAQPTALLAQTSSNRNQNYNQ 253
            +  E+H  L++ ES   K +  + A   P      T  N N N NQ
Sbjct: 205 PSLTEIHERLINRES---KLLALNSAEVVPITANVVTHRNTNTNRNQ 218

[Close]

BLAST of Lag0005772 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-07
Identity = 47/200 (23.50%), Postives = 83/200 (41.50%), Query Frame = 0


Query: 32  FVLWKHQLRSILKAHKLFGFIDGSFPKPASSVRTTTSSSSTDSSSTVSQPNPQYEDWIAK 91
           F  W+ ++R +L    L   +D    KP +                      + EDW   
Sbjct: 17  FSTWQRRMRDLLIQQGLHKVLDVDSKKPDTM---------------------KAEDWADL 76

Query: 92  DHALQTQINATLSPTALAYIVGCETAQQMWETLEKHYSSTSRTNVVNLKSELQTIAKKSG 151
           D    + I   LS   +  I+  +TA+ +W  LE  Y S + TN + LK +L  +    G
Sbjct: 77  DERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEG 136

Query: 152 ESITQYIQRIKELKDKLANVSVTIHVEDLVIYTMSGLPAEYNTSKTSLRTRSQSITFEEL 211
            +   ++     L  +LAN+ V I  ED  I  ++ LP+ Y+   T++     +I  +++
Sbjct: 137 TNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDV 195

Query: 212 HVLLVSEESALEKQIKRDEA 232
              L+  E   +K   + +A
Sbjct: 197 TSALLLNEKMRKKPENQGQA 195

[Close]

BLAST of Lag0005772 vs. ExPASy TrEMBL
Match: A0A6J1D9L6 (uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018892 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 7.0e-74
Identity = 153/247 (61.94%), Postives = 194/247 (78.54%), Query Frame = 0


Query: 4   STARDLNSSIFLLSNICNLVSIRLDSTNFVLWKHQLRSILKAHKLFGFIDGSFPKPASSV 63
           +T +DL+S IFLLSNICNLVSIRLDST+F+LWK QL +ILKAHKLFGFIDGS   P S  
Sbjct: 28  NTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAP-SQF 87

Query: 64  RTTTSSSSTDSSSTVSQP--NPQYEDWIAKDHALQTQINATLSPTALAYIVGCETAQQMW 123
             ++S + +  ++T S P  NP +EDWIAKD AL T INATLS  ALAY+V   T++Q+W
Sbjct: 88  LASSSETESQPTTTTSLPVINPHFEDWIAKDQALMTLINATLSAEALAYVVRSGTSKQVW 147

Query: 124 ETLEKHYSSTSRTNVVNLKSELQTIAKKSGESITQYIQRIKELKDKLANVSVTIHVEDLV 183
           E LEKHYSS SRTNVVNLKS+LQ+I KK+ ESI  Y++RIKE+KDK ANVS+TI+ E L+
Sbjct: 148 EVLEKHYSSNSRTNVVNLKSDLQSIVKKTEESIDAYVKRIKEIKDKFANVSITINDEYLL 207

Query: 184 IYTMSGLPAEYNTSKTSLRTRSQSITFEELHVLLVSEESALEKQIKRDEAFAQPTALLAQ 243
           IY ++GL  EYNT  TS+RTR+QS++FEELHV + SEESA+EKQ+KR++   QP AL A 
Sbjct: 208 IYALNGLSTEYNTLSTSMRTRAQSVSFEELHVFMKSEESAIEKQMKREDLVTQPNALFAS 267

Query: 244 TSSNRNQ 249
           +  ++N+
Sbjct: 268 SPQSQNR 273

[Close]

BLAST of Lag0005772 vs. ExPASy TrEMBL
Match: A0A5D3CLI6 (T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 2.0e-73
Identity = 157/243 (64.61%), Postives = 189/243 (77.78%), Query Frame = 0


Query: 2   ADSTARDLNSSIFLLSNICNLVSIRLDSTNFVLWKHQLRSILKAHKLFGFIDGSFPKPAS 61
           + S  +D  S IFLLSNICNL+S+RLDSTNFVLWK QL +ILKAHKL+GFIDG+ P P  
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPP- 68

Query: 62  SVRTTTSSSSTDSSSTVSQPNPQYEDWIAKDHALQTQINATLSPTALAYIVGCETAQQMW 121
             RT  SSS   +S+   Q NP YEDWIAKD AL T INATLSP ALAY+VG  +++Q+W
Sbjct: 69  --RTNNSSS---TSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVW 128

Query: 122 ETLEKHYSSTSRTNVVNLKSELQTIAKKSGESITQYIQRIKELKDKLANVSVTIHVEDLV 181
           + L K YSS SR+NVVNLKS+LQTI KK  ESI  YI+RIKE+KDKLANVS  I+ EDL+
Sbjct: 129 DVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLL 188

Query: 182 IYTMSGLPAEYNTSKTSLRTRSQSITFEELHVLLVSEESALEKQIKRDEAFAQPTALLAQ 241
           IY ++GLP EYNT +TS+RTRSQ +TFEELHVLL +EESAL KQ K D+++ QPT LL+ 
Sbjct: 189 IYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSS 245

Query: 242 TSS 245
           + S
Sbjct: 249 SQS 245

[Close]

BLAST of Lag0005772 vs. ExPASy TrEMBL
Match: A0A1S3BI58 (uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 2.0e-73
Identity = 157/243 (64.61%), Postives = 189/243 (77.78%), Query Frame = 0


Query: 2   ADSTARDLNSSIFLLSNICNLVSIRLDSTNFVLWKHQLRSILKAHKLFGFIDGSFPKPAS 61
           + S  +D  S IFLLSNICNL+S+RLDSTNFVLWK QL +ILKAHKL+GFIDG+ P P  
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPP- 68

Query: 62  SVRTTTSSSSTDSSSTVSQPNPQYEDWIAKDHALQTQINATLSPTALAYIVGCETAQQMW 121
             RT  SSS   +S+   Q NP YEDWIAKD AL T INATLSP ALAY+VG  +++Q+W
Sbjct: 69  --RTNNSSS---TSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVW 128

Query: 122 ETLEKHYSSTSRTNVVNLKSELQTIAKKSGESITQYIQRIKELKDKLANVSVTIHVEDLV 181
           + L K YSS SR+NVVNLKS+LQTI KK  ESI  YI+RIKE+KDKLANVS  I+ EDL+
Sbjct: 129 DVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLL 188

Query: 182 IYTMSGLPAEYNTSKTSLRTRSQSITFEELHVLLVSEESALEKQIKRDEAFAQPTALLAQ 241
           IY ++GLP EYNT +TS+RTRSQ +TFEELHVLL +EESAL KQ K D+++ QPT LL+ 
Sbjct: 189 IYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSS 245

Query: 242 TSS 245
           + S
Sbjct: 249 SQS 245

[Close]

BLAST of Lag0005772 vs. ExPASy TrEMBL
Match: A0A1S4DWT9 (uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 2.0e-73
Identity = 157/243 (64.61%), Postives = 189/243 (77.78%), Query Frame = 0


Query: 2   ADSTARDLNSSIFLLSNICNLVSIRLDSTNFVLWKHQLRSILKAHKLFGFIDGSFPKPAS 61
           + S  +D  S IFLLSNICNL+S+RLDSTNFVLWK QL +ILKAHKL+GFIDG+ P P  
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPP- 68

Query: 62  SVRTTTSSSSTDSSSTVSQPNPQYEDWIAKDHALQTQINATLSPTALAYIVGCETAQQMW 121
             RT  SSS   +S+   Q NP YEDWIAKD AL T INATLSP ALAY+VG  +++Q+W
Sbjct: 69  --RTNNSSS---TSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVW 128

Query: 122 ETLEKHYSSTSRTNVVNLKSELQTIAKKSGESITQYIQRIKELKDKLANVSVTIHVEDLV 181
           + L K YSS SR+NVVNLKS+LQTI KK  ESI  YI+RIKE+KDKLANVS  I+ EDL+
Sbjct: 129 DVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLL 188

Query: 182 IYTMSGLPAEYNTSKTSLRTRSQSITFEELHVLLVSEESALEKQIKRDEAFAQPTALLAQ 241
           IY ++GLP EYNT +TS+RTRSQ +TFEELHVLL +EESAL KQ K D+++ QPT LL+ 
Sbjct: 189 IYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSS 245

Query: 242 TSS 245
           + S
Sbjct: 249 SQS 245

[Close]

BLAST of Lag0005772 vs. ExPASy TrEMBL
Match: A0A1S3BIR3 (uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 2.0e-73
Identity = 157/243 (64.61%), Postives = 189/243 (77.78%), Query Frame = 0


Query: 2   ADSTARDLNSSIFLLSNICNLVSIRLDSTNFVLWKHQLRSILKAHKLFGFIDGSFPKPAS 61
           + S  +D  S IFLLSNICNL+S+RLDSTNFVLWK QL +ILKAHKL+GFIDG+ P P  
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPP- 68

Query: 62  SVRTTTSSSSTDSSSTVSQPNPQYEDWIAKDHALQTQINATLSPTALAYIVGCETAQQMW 121
             RT  SSS   +S+   Q NP YEDWIAKD AL T INATLSP ALAY+VG  +++Q+W
Sbjct: 69  --RTNNSSS---TSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVW 128

Query: 122 ETLEKHYSSTSRTNVVNLKSELQTIAKKSGESITQYIQRIKELKDKLANVSVTIHVEDLV 181
           + L K YSS SR+NVVNLKS+LQTI KK  ESI  YI+RIKE+KDKLANVS  I+ EDL+
Sbjct: 129 DVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLL 188

Query: 182 IYTMSGLPAEYNTSKTSLRTRSQSITFEELHVLLVSEESALEKQIKRDEAFAQPTALLAQ 241
           IY ++GLP EYNT +TS+RTRSQ +TFEELHVLL +EESAL KQ K D+++ QPT LL+ 
Sbjct: 189 IYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSS 245

Query: 242 TSS 245
           + S
Sbjct: 249 SQS 245

[Close]

BLAST of Lag0005772 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-08
Identity = 35/137 (25.55%), Postives = 64/137 (46.72%), Query Frame = 0


Query: 28  DSTNFVLWKHQLRSILKAHKLFGFIDGSFPKPASSVRTTTSSSSTDSSSTVSQPNPQYED 87
           D  N+V WK + RS L+  K FGFIDG+ PKP                      +P Y+ 
Sbjct: 38  DEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKP-------------------DPFSPLYQP 97

Query: 88  WIAKDHALQTQINATLSPTALAYIVGCETAQQMWETLEKHYSSTSRTNVVNLKSELQTIA 147
           W   +  +   +  +++   L  ++  ETA +MWE L + +       +  L+  L T+ 
Sbjct: 98  WEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATL- 154

Query: 148 KKSGESITQYIQRIKEL 165
           ++ G+S+ +Y  ++ ++
Sbjct: 158 RQGGDSVEEYFGKLSKV 154

The following BLAST results are available for this feature:

BLAST of Lag0005772 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150845.1	1.4e-73	61.94	uncharacterized protein LOC111018892 [Momordica charantia]	[more]
XP_008448007.1	4.2e-73	64.61	PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]	[more]
XP_008448008.1	4.2e-73	64.61	PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]	[more]
KAA0049700.1	4.2e-73	64.61	T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa]	[more]
KAE8645659.1	4.2e-73	63.79	hypothetical protein Csa_020439 [Cucumis sativus]	[more]

BLAST of Lag0005772 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	9.2e-15	26.91	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.1e-12	25.55	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	1.9e-07	23.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Lag0005772 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9L6	7.0e-74	61.94	uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A5D3CLI6	2.0e-73	64.61	T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=...	[more]
A0A1S3BI58	2.0e-73	64.61	uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DWT9	2.0e-73	64.61	uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BIR3	2.0e-73	64.61	uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Lag0005772 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21280.1	1.3e-08	25.55	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 154..174
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 88..223 e-value: 6.9E-26 score: 90.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..82
None	No IPR available	PANTHER	PTHR47481:SF3	GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 14..248
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 14..248
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 21..60 e-value: 6.3E-11 score: 41.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005772.1	Lag0005772.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding