Lag0005771 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005771
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationchr6: 29386967 .. 29392925 (-)
RNA-Seq ExpressionLag0005771
SyntenyLag0005771
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGGCGGCGCGCCTTTGTTCACGTTCCGGAGTCAGCACTTAAGGGAACAACCTTTCTACTATCCCTAAAGACGGGTAGGAGTGAATTCCATCTTGTAGGACTATGTCCCCAGCTATCTACCTGGTGTTATCCCCAAAGTGGCAGGTCTATTGAGCGGCGTTTTAGGGCCACTCTCACCTTTGCAAATCAAAGGATAATCCCAGATAAACAGGAGTTCATGGTTAGCTCAGGATTAAGATCGAGTTACCTAGGTCATCGCTTGAAATATGTCAGTTTCACGGTAAATGGCGTTATAAAGTGAAAGTGACTTATTTCGCGGTCCGGTCTTATAAAAACTCATTTGCATAGGACGTCCCCACTTGCATGTCTCTACATGAACGATACAGGATCACATCGTTTGTCATAAAGTGGGCCGCATCACATAGTTTTTCCTAGGATAAGGTACCCAGTCTTATCCCTATACTATAGACCGTTTTAGGCTATGTACTTGAACCTGATCCATATTTATGTCACTACATAAAGTTCAATGATTCATATCATAGCCAAGGATTCTAATTTTATTGGATTTGGTTTAATAAATACATAGTTAAACTAATCTTTCAACAACCATAATAAAAACTATTCTAATAAGTTTTATACATAACTTTGTTACATTTACTATCCACGAGTTTTAGGACATAAACCCCAACAAACTCCCACTTGGACTAAAACTTTAGTGGGTTGTTCAACTCGTAGACCTAGACCATCTAGATTTTCCTCGAACACTTTTAGCCATGAGGGCCTTCGTAAACTTTTCAGCAATGTATTACTTTTGAGGTTTCCTTGTGACCATCACGTCCCCTCAACTCATAACCTCTTACATGAGATGTGTGTTTTCGTTCTATATAATCGCCTAAAATTTGGAACATCTTTCCAAATGAACTTCCTAAGTCCTAAGACTTCTGAGCTCGCTTCATAAGTAGTAACATACCTGGCCTTCAAGATAAAGTCTGTGATACATCCTTACTCAATGCTACGCCATCATATAGTTCCCTGTTTAGGGTGAATTCTGATGTCGATGTGGATTTCCATGAATCCTGATCAGTGTGCTAATCAGAATTAGTGTATCCTGTAAGGATCAAATCCTCAACACCATACACGAGCCTATTAGCCCTCGTTCTCCTAAGATACTTGAGGATATCTGTACTGTAGTCCAACGGCCTTAGAATGGACTAAATTGGTATCTACTGACAATCCCTACTGCATACCTTATGCTAAGCCTAACAACTGATTGTCTAGGCATGGGAATTTCGTCTCAACTTCTCAACCTCTTGAGACGTCTCAGGACACTATTCCTGTGACAAATGAATTCCATATTTTAAAGGTAAACAACCTTTCTCGGAATTCTAATCTTATATCTCGCGAACACTTTTGTCCATTTAAGATACTTGAGACTGGGCTAGCGATTTGTTCTTTCTATTCCAAATGTTTGGAGTCTAAGAACATACTTCGCCTTTCCAACTCTCTTATTTGGAACTAGGTTGCTAGCTAATTTCTAATGTCAGTTGGATAATCTATATCATTCCTAAACAATAGGATATCAAGCATATACTAAACTAAGAAAGCTACTACACAATTTATAATTCTTCTGCCGACACAACGCTTGCAATAGTATGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATTATACATTAAAATGTAAAGTTTAATTTGAAATTAAACTTTATTATTATGAGATTAATAAATATTTGACGAAGTTTAAATATTAATATGAATTTGATTCATATTAAATTTATAGGATATAAGAGAATTGGAAGGAGTTCCAATTTTAATATGAATTTGATTCATATTATAGAATTAATTAATTGAAGGCCTGAAATTAAATATATGATATTTAATTGGGTAATTAATTAATTAACTAATAGAATGTCTGAAATTAAATATATGATATTTAATTGGTGATTAATTAATTTAAAGAATTAATTAATTTGAAATTAATCAATTATTGAAATGATTAATCACTTATGGAAGTAATTAATCATTTATGGAATGGATTTAATCACTTATGGAAGTGATCAATCATTTATGGAAAAGATTAATCAATTATGGAATTGATTGGTTATGGAATTGATTAATTATGGAAAAGATTAAATCAGTTATGGAAATAATTGATTTTAAATGAATATTTTATTCATGAACTTTCTCCTATAAATAGAACACTGACCCTAGGGTTTAGGGATGAAAACATATGGCCACCTAAGGCCTTCTCATATAACCTCAAGAACTCTAGGGAGAATTTTCTCTCTAGAGTTTTTCCCATTAAAGATTTAGGTAGTCCCACAACTACGTTCCTAATATATGAGTTATAGCATGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCAAGAATCTTCCGTTGAAGTATTCAGAGTCGTCAACGGAGGTATGTTGTTCACCGCTTAACCTTTTGCCAATGTATTGCCATTTTGTAGAACAAAATTAATTTACGAACGGTCCAATTGCTTCCGCTGTAACGGAATTTGGAATTCCAATCCTTCAATTGGTATCAGAGTCGATCGTATGCTTAATTTTGTTTTAAAAAATTTGCATTGGTTCTTTGGTGGGAATTTTCTACATTTGATTAGTAAGTCAATTTTTCACAGGTCGTTCGTTACTATAGACAGGTCAAATGTTTGTTTTATCCCTATAGTACATCTTAGTTCCTTAAGTCCACTGATCCTCTATTAAACAATTTGTTTATGGTCCAACCATGAAACAAGATCCCTCTCGAGCCAGTGAGAGGACAGGGCCCCTTGTTCAAGTCTCGAACTCAGCACTTAAGAGAACAACCTTTCTACTATCCTTGTATCGGGTAGGAGTGAATTCTATTTTGCTTTACTACGTCCCCAGCCATCCATCTAATGTTATCCCCAAAATGGTAGGAGTATTGAATGATACTTATATGAACACTCTCACCAATGCAGATCAAAAGATAACATTAAATGAACAAGAGTTCATAGTAAGCTCGGGATTAAGATCCAGTTACCTAGGTCATCGCATGAAATAATCAGTCTTAACAGTAAACGGTGTTATAAAGTAAGAGTGACTTATTTCTTTGTCCAGTCTTGTGTACATCTTTTACACAGGATGCCCCTACTCACATGTCAATACACGAACGAACCAGGATCACGTCGTTTGCTTTAGCAAAGTAAGTCGCATCTATAGTGTTACCAAAACAAGGTACCCAACCTTATTCATTTACTATAGACCATTTAGGTTATATACTCGAACTCGATCGCTGGCTATATACACGATTTAGTTCGAGTATCTCATGTTATAACCATGGATGGTTCTATTGGATTATTTAAGATATTCATAAATGATTTTTCACTAAATAACATCTTTATTCATATAAAGGATAACAAAACTTGAGTTCTAGGACACAAACCCCAACAATAGATTCCATTTTCAGGTGCATAGCTTTAATCCACTGGTTCTAGTTAACATCACTCATTGCCTTACTTTAAGACAATGGATCCTCAATGTCATCATCAGGTATGATGTTCTGGGCTTCAGTTAAGCCCATGTAATGGTCAGGTTGTAGAACAATCCTCCCACTACATCGAGGCACTCTCAACTCTTGAGATAGATGTAACTAACCAGTTGTATCGGTCCTATCAACAACTCTTGTTAAAGGTTCAACATCATCAACAACCCTTGTTGACTTATCAACAGCTCTTGTTGATATTTTTGTAGCTTCATCAGTTAATTTATTTATAAAGATATTACTTTGTGGCTTATTATTTCTCATGTGGTATTCTTATGAGAATGTAGCATTTGTCGGTACAAATTCTTTATTCTCTTGTGGATTAAAGAAGTATCCACATCTCTCGTTTCCATGGGGCAACCTACGAATAAGTATACTCTTGAACAGTGTCTCCAAAAATAACGTAAACCTCTTTTACGCCTTATCCACAAATCAAAAAATGTTGAAGAAACATTTTTTTATGGAACGTTGTTCAAAATACACACTGCAGTCAACACTGCATGACCTCAAAACGAGTAAGGCAAATGAACATGGCTCATAATGGATCGAACCATATCCAATAGGATTCTATTTCTCCTATCTGATACACAGTTCTTTTGAGGTGTACCAGGGGTTGTGAGTTGGAATGTAATTCCATGTTTTATTAAATAGTCTTGGAATCTCAAGTCCCACATACTCTACACCTCGATCAGATCGAAGTTTTTTTTATCATTTCAACTAACAAGTTTCCAACTTTAGTCCCAAGCCCATTCGAATTTCTCAAGAGCTTTAGACTTAAGTTGCATTAGGTTGAGATACTCATACCTTGAATAATTATCTACAATATAGATGGATTATTCATGCCCTCCCATTGCTTTAACATATTTGGCCACAAGGATCCAAATGTACAAGCTCTAAGGGCTCGTTGGCTCTATGGTTCTTTTCAAGCAAAAGAACCTATTAGTCATATTGTCCTTAAGGCATTATCCACAAGGTAGTAGAGAGTAATCTTCTAACTTGCTTAGAAATCTACTTTTGACCAAGCTCTCAATCATATTGAGGTAAATATGACCTAACCTTAAGCGCCAAAGAAAGGTATTTTCCTATAGGAGAAAACCTTTGCCTCACATTTCTTTGAGTAGTAGAAGCCTCAAACAACCCACTGTCCATAACTATTTTACTCTTGATTAGTCTTAAAACATTTATGTTATTTTAAGTTTAGCTGAACGAAAGTTAACTCTCTTTCTTGAAATGAACTGCGTTAGCAGGGAAAGGTACAGAGCAACATTGTTCCCGCGTATAAGATACAAAAATCAAATTTCTGTTAATCTTAGGAAATACATACACATTATCTTATAATATGTATTTTCTCCCACTAGGAAAAAATAACTTAACGTTCCCCATTGTTTCAACCAAGATAACTTCCCTAGTTTCAACTTTGGAAGCTATATAACCAACATCAAACTGTTGCCAGGAACTTATTGCTTTTAATAAGAAGAACAAACGTGATTTGTGACCCCCTGAATCAAGTATTCAGGCAGAATCACCATTCTCCACAAATCACGCTTACAAAACTAGTAAATCAAATTTACTGTCTTTGGATAAGTCTTCTTTGGCTAAGCAAGGTCCAATATCATATTCATTAGGAATACTTCTTAATGAGTTAGACATTTGGGGCATGAGGACATTCCTCTGTTAAGACTAATCTTAAATTATTCACCACAAAGTAATCGTTTAAGTCTGTTATATAATCATCGTTATTTATAACTAAGGGTAAGACAATACACATTTCATTATTGAATTGCTAAAATAACAAATTACTTGATTATTTATCGCACTAACCCATTACATCTTATCCAATCAAATTCAACAAAAACACACAAGCAATAAAAAAAACCTTAGAAAACTATTGAATTAGTTTTTGCAACGATACTTTAGAGGTTTAGAACAACAGCCACCGAAGGTGATAAGTCCAATTTATTATACACTTATAATCTCTCAATTTTCTTATCTTAGTTGAATTCCTTGTGAAAAATGCCTTAAAATGAGTATAACATGTCTATAGGTCCTCACCGGAGCTTTGGAAGCAATTCGGGGCTTAAACGAGCGAAACCGGAGCGTAAAATGACAATTCTGCCCTTGGAGCCTCATCAGTGTCGAGAAGCTCGTCATACAGAGTCGAGACGCTACAACGTCAAGACGCTTGCTCAACAGTGTCGCGACGCTAGAGCAATCCTAGAAATATTTTCTAAGATTGAAGGGACAGCGTCCAGATGCTTGTTGCACAGCGTCGCGACACTAGGCAGTTTTCCAGAAATGAAATTTTCCAAATTTGGCTGA

mRNA sequence

ATGAGAGGGCGGCGCGCCTTTGTTCACGTTCCGGAGTCAGCACTTAAGGGAACAACCTTTCTACTATCCCTAAAGACGGGTAGGAGTGAATTCCATCTTGTAGGACTATGTCCCCAGCTATCTACCTGGTGTTATCCCCAAAGTGGCAGGTCTATTGAGCGGCGTTTTAGGGCCACTCTCACCTTTGCAAATCAAAGGATAATCCCAGATAAACAGGAGTTCATGGTTAGCTCAGGATTAAGATCGAGTTACCTAGGTCATCGCTTGAAATATGTCAGTTTCACGGTAAATGGCGTTATAAAGCATGGGAATTTCGTCTCAACTTCTCAACCTCTTGAGACGTCTCAGGACACTATTCCTGTGACAAATGAATTCCATATTTTAAAGAGCAATCAAGAATCTTCCGTTGAAGTATTCAGAGTCGTCAACGGAGGATGCCCCTACTCACATGTCAATACACGAACGAACCAGGATCACGTCGTTTGCTTTAGCAAATTAAGCCCATGTAATGGTCAGGTTGTAGAACAATCCTCCCACTACATCGAGGCACTCTCAACTCTTGAGATAGATGTAACTAACCAGTTGTATCGGTCCTATCAACAACTCTTGTTAAAGGCAGAATCACCATTCTCCACAAATCACGCTTACAAAACTAGTAAATCAAATTTACTGTCTTTGGATAAGTCTTCTTTGGCTAAGCAAGGTCCTCACCGGAGCTTTGGAAGCAATTCGGGGCTTAAACGAGCGAAACCGGAGCGTAAAATGACAATTCTGCCCTTGGAGCCTCATCAGTGTCGAGAAGCTCGTCATACAGAGTCGAGACGCTACAACGTCAAGACGCTTGCTCAACAGTGTCGCGACGCTAGAGCAATCCTAGAAATATTTTCTAAGATTGAAGGGACAGCGTCCAGATGCTTGTTGCACAGCGTCGCGACACTAGGCAGTTTTCCAGAAATGAAATTTTCCAAATTTGGCTGA

Coding sequence (CDS)

ATGAGAGGGCGGCGCGCCTTTGTTCACGTTCCGGAGTCAGCACTTAAGGGAACAACCTTTCTACTATCCCTAAAGACGGGTAGGAGTGAATTCCATCTTGTAGGACTATGTCCCCAGCTATCTACCTGGTGTTATCCCCAAAGTGGCAGGTCTATTGAGCGGCGTTTTAGGGCCACTCTCACCTTTGCAAATCAAAGGATAATCCCAGATAAACAGGAGTTCATGGTTAGCTCAGGATTAAGATCGAGTTACCTAGGTCATCGCTTGAAATATGTCAGTTTCACGGTAAATGGCGTTATAAAGCATGGGAATTTCGTCTCAACTTCTCAACCTCTTGAGACGTCTCAGGACACTATTCCTGTGACAAATGAATTCCATATTTTAAAGAGCAATCAAGAATCTTCCGTTGAAGTATTCAGAGTCGTCAACGGAGGATGCCCCTACTCACATGTCAATACACGAACGAACCAGGATCACGTCGTTTGCTTTAGCAAATTAAGCCCATGTAATGGTCAGGTTGTAGAACAATCCTCCCACTACATCGAGGCACTCTCAACTCTTGAGATAGATGTAACTAACCAGTTGTATCGGTCCTATCAACAACTCTTGTTAAAGGCAGAATCACCATTCTCCACAAATCACGCTTACAAAACTAGTAAATCAAATTTACTGTCTTTGGATAAGTCTTCTTTGGCTAAGCAAGGTCCTCACCGGAGCTTTGGAAGCAATTCGGGGCTTAAACGAGCGAAACCGGAGCGTAAAATGACAATTCTGCCCTTGGAGCCTCATCAGTGTCGAGAAGCTCGTCATACAGAGTCGAGACGCTACAACGTCAAGACGCTTGCTCAACAGTGTCGCGACGCTAGAGCAATCCTAGAAATATTTTCTAAGATTGAAGGGACAGCGTCCAGATGCTTGTTGCACAGCGTCGCGACACTAGGCAGTTTTCCAGAAATGAAATTTTCCAAATTTGGCTGA

Protein sequence

MRGRRAFVHVPESALKGTTFLLSLKTGRSEFHLVGLCPQLSTWCYPQSGRSIERRFRATLTFANQRIIPDKQEFMVSSGLRSSYLGHRLKYVSFTVNGVIKHGNFVSTSQPLETSQDTIPVTNEFHILKSNQESSVEVFRVVNGGCPYSHVNTRTNQDHVVCFSKLSPCNGQVVEQSSHYIEALSTLEIDVTNQLYRSYQQLLLKAESPFSTNHAYKTSKSNLLSLDKSSLAKQGPHRSFGSNSGLKRAKPERKMTILPLEPHQCREARHTESRRYNVKTLAQQCRDARAILEIFSKIEGTASRCLLHSVATLGSFPEMKFSKFG
Homology
[Close]
BLAST of Lag0005771 vs. NCBI nr
Match: TYK16320.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 6.4e-06
Identity = 33/88 (37.50%), Postives = 49/88 (55.68%), Query Frame = 0 

Query: 25  KTGRSEFHLVGLCPQLSTWCYPQSGRSIERRFRATLTFANQRIIPDKQEFMVSSGLRSSY 84
           K GRSEFH     P       P+ G  + +R+RA LT+A+ RI+ ++Q+F+VS GLRSSY
Sbjct: 808 KWGRSEFHFAPYVPSYPLDLTPEMGGLLGQRYRAALTYADLRILLNEQKFIVSLGLRSSY 867

Query: 85  LGHRLKYVSFTVNGVIKHGNFVSTSQPL 113
           LG  +          IK+    +++  L
Sbjct: 868 LGEEINGGRINEKTKIKNSPMANSNDEL 895

[Close]
BLAST of Lag0005771 vs. NCBI nr
Match: KAA0054446.1 (hypothetical protein E6C27_scaffold24G002070 [Cucumis melo var. makuwa] >TYK14593.1 hypothetical protein E5676_scaffold552G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 7.8e-04
Identity = 40/91 (43.96%), Postives = 50/91 (54.95%), Query Frame = 0 

Query: 1  MRGRRAFVHVPESALKGTTFLLSLKTGRSEFHLVGLCP----QLSTWCYPQSGRSIERRF 60
          MRG   +V   +S LKGTT+LL+LK       L+ + P     LS       G + E  F
Sbjct: 1  MRGWGPYVQDLDSVLKGTTYLLTLKWVGVNSILLPMFPTIHLSLSLKWKAYWGNANELPF 60

Query: 61 RATLTFANQRIIPDKQEFMVSSGLRSSYLGH 88
              T+A+ RII  +QEF VSSGLR SYLGH
Sbjct: 61 ----TYADLRIISCEQEFTVSSGLRLSYLGH 87

[Close]
BLAST of Lag0005771 vs. ExPASy TrEMBL
Match: A0A5D3CY86 (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001000 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-06
Identity = 33/88 (37.50%), Postives = 49/88 (55.68%), Query Frame = 0 

Query: 25  KTGRSEFHLVGLCPQLSTWCYPQSGRSIERRFRATLTFANQRIIPDKQEFMVSSGLRSSY 84
           K GRSEFH     P       P+ G  + +R+RA LT+A+ RI+ ++Q+F+VS GLRSSY
Sbjct: 808 KWGRSEFHFAPYVPSYPLDLTPEMGGLLGQRYRAALTYADLRILLNEQKFIVSLGLRSSY 867

Query: 85  LGHRLKYVSFTVNGVIKHGNFVSTSQPL 113
           LG  +          IK+    +++  L
Sbjct: 868 LGEEINGGRINEKTKIKNSPMANSNDEL 895

[Close]
BLAST of Lag0005771 vs. ExPASy TrEMBL
Match: A0A5D3CRT6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00950 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.8e-04
Identity = 40/91 (43.96%), Postives = 50/91 (54.95%), Query Frame = 0 

Query: 1  MRGRRAFVHVPESALKGTTFLLSLKTGRSEFHLVGLCP----QLSTWCYPQSGRSIERRF 60
          MRG   +V   +S LKGTT+LL+LK       L+ + P     LS       G + E  F
Sbjct: 1  MRGWGPYVQDLDSVLKGTTYLLTLKWVGVNSILLPMFPTIHLSLSLKWKAYWGNANELPF 60

Query: 61 RATLTFANQRIIPDKQEFMVSSGLRSSYLGH 88
              T+A+ RII  +QEF VSSGLR SYLGH
Sbjct: 61 ----TYADLRIISCEQEFTVSSGLRLSYLGH 87

The following BLAST results are available for this feature:
BLAST of Lag0005771 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK16320.16.4e-0637.50retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa][more]
KAA0054446.17.8e-0443.96hypothetical protein E6C27_scaffold24G002070 [Cucumis melo var. makuwa] >TYK1459... [more]
BLAST of Lag0005771 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0005771 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CY863.1e-0637.50Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuw... [more]
A0A5D3CRT63.8e-0443.96Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Lag0005771 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005771.1Lag0005771.1mRNA