Lag0005770 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005770
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	60S ribosomal protein L34
Location	chr6: 29249528 .. 29249890 (+)
RNA-Seq Expression	Lag0005770
Synteny	Lag0005770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCAACATCTTACATACCGCAAGCGCCATAGCTATGCTATTAAGTCTAACCAGCATCGTGTCGTCAAAACCCTTGGCGGGAAGCTCGTGTACCAGACTACCAAGAAGAGAGCCAGTGGACCAAAATGTCCAGTTACCGGCAAAAGGATTCAGAGAATTCCTCACTTGAGGCCAGCTGAATATAAGAGGTCTAGACTGGCTAGGAACTGCAAGACTGTGAATCGTGCATACGACGGCGTTTTGTCTGGCTGTGCCGTGGGAGAGAAGATCATTCGGGCCTTTTTGGTGGAAGAACAAAAGATTGTGAATAAGGTATTGAAGATTCAGAAGGCAAAGGAAAAGCTGGCAGCAAAGAGCTAA

mRNA sequence

ATGGTTCAACATCTTACATACCGCAAGCGCCATAGCTATGCTATTAAGTCTAACCAGCATCGTGTCGTCAAAACCCTTGGCGGGAAGCTCGTGTACCAGACTACCAAGAAGAGAGCCAGTGGACCAAAATGTCCAGTTACCGGCAAAAGGATTCAGAGAATTCCTCACTTGAGGCCAGCTGAATATAAGAGGTCTAGACTGGCTAGGAACTGCAAGACTGTGAATCGTGCATACGACGGCGTTTTGTCTGGCTGTGCCGTGGGAGAGAAGATCATTCGGGCCTTTTTGGTGGAAGAACAAAAGATTGTGAATAAGGTATTGAAGATTCAGAAGGCAAAGGAAAAGCTGGCAGCAAAGAGCTAA

Coding sequence (CDS)

ATGGTTCAACATCTTACATACCGCAAGCGCCATAGCTATGCTATTAAGTCTAACCAGCATCGTGTCGTCAAAACCCTTGGCGGGAAGCTCGTGTACCAGACTACCAAGAAGAGAGCCAGTGGACCAAAATGTCCAGTTACCGGCAAAAGGATTCAGAGAATTCCTCACTTGAGGCCAGCTGAATATAAGAGGTCTAGACTGGCTAGGAACTGCAAGACTGTGAATCGTGCATACGACGGCGTTTTGTCTGGCTGTGCCGTGGGAGAGAAGATCATTCGGGCCTTTTTGGTGGAAGAACAAAAGATTGTGAATAAGGTATTGAAGATTCAGAAGGCAAAGGAAAAGCTGGCAGCAAAGAGCTAA

Protein sequence

MVQHLTYRKRHSYAIKSNQHRVVKTLGGKLVYQTTKKRASGPKCPVTGKRIQRIPHLRPAEYKRSRLARNCKTVNRAYDGVLSGCAVGEKIIRAFLVEEQKIVNKVLKIQKAKEKLAAKS

Homology

[Close]

BLAST of Lag0005770 vs. NCBI nr
Match: XP_027098139.1 (60S ribosomal protein L34 [Coffea arabica] >XP_027153728.1 60S ribosomal protein L34 [Coffea eugenioides])

HSP 1 Score: 204.5 bits (519), Expect = 5.0e-49
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MVQHLTYRKRHSYAIKSNQHRVVKTLGGKLVYQTTKKRASGPKCPVTGKRIQRIPHLRPA 60
           MVQ LTYRKRHSYA KSNQHRVVKT GGKLVYQTTKKRASGPKCPVTGKRIQ IPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNCKTVNRAYDGVLSGCAVGEKIIRAFLVEEQKIVNKVLKIQKAKEKLAAKS 120
           EYKRSRLARN +TVNRAY GVLSG AV E+IIRAFLVEEQKIV KVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of Lag0005770 vs. NCBI nr
Match: XP_038889603.1 (60S ribosomal protein L34 [Benincasa hispida])

HSP 1 Score: 204.1 bits (518), Expect = 6.6e-49
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MVQHLTYRKRHSYAIKSNQHRVVKTLGGKLVYQTTKKRASGPKCPVTGKRIQRIPHLRPA 60
           MVQ LTYRKRHSYA KSNQHRVVKT GGKL+YQTTKKRASGPKCPVTGKRIQ IPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNCKTVNRAYDGVLSGCAVGEKIIRAFLVEEQKIVNKVLKIQKAKEKLAAKS 120
           EYKRSRLARN +TVNRAY GVLSG AV E+IIRAFLVEEQKIV KVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of Lag0005770 vs. NCBI nr
Match: XP_038893923.1 (60S ribosomal protein L34-like [Benincasa hispida])

HSP 1 Score: 203.8 bits (517), Expect = 8.6e-49
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MVQHLTYRKRHSYAIKSNQHRVVKTLGGKLVYQTTKKRASGPKCPVTGKRIQRIPHLRPA 60
           MVQ LTYRKRHSYA KSNQHRVVKT GGKLVYQTTKKRASGPKCPVTGKRIQ IPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNCKTVNRAYDGVLSGCAVGEKIIRAFLVEEQKIVNKVLKIQKAKEKLAAKS 120
           EYKRSRLARN +TVNRAY GVLSG AV E+IIRAFLVEEQKIV KVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of Lag0005770 vs. NCBI nr
Match: XP_004138165.3 (60S ribosomal protein L34 [Cucumis sativus] >XP_004147322.1 60S ribosomal protein L34 [Cucumis sativus] >XP_008453201.1 PREDICTED: 60S ribosomal protein L34 [Cucumis melo] >XP_008453217.1 PREDICTED: 60S ribosomal protein L34 [Cucumis melo] >XP_008460833.1 PREDICTED: 60S ribosomal protein L34 [Cucumis melo] >KAA0057939.1 60S ribosomal protein L34 [Cucumis melo var. makuwa] >KAA0057954.1 60S ribosomal protein L34 [Cucumis melo var. makuwa] >KAA0063093.1 60S ribosomal protein L34 [Cucumis melo var. makuwa] >KGN62245.1 hypothetical protein Csa_016921 [Cucumis sativus] >KGN63670.2 hypothetical protein Csa_013763 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 1.1e-48
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MVQHLTYRKRHSYAIKSNQHRVVKTLGGKLVYQTTKKRASGPKCPVTGKRIQRIPHLRPA 60
           MVQ LTYRKRHSYA KSNQHRVVKT GGKLVYQTTKKRASGPKCPVTGKRIQ IPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNCKTVNRAYDGVLSGCAVGEKIIRAFLVEEQKIVNKVLKIQKAKEKLAAKS 120
           EYKRSRLARN +TVNRAY GVLSG AV E+IIRAFLVEEQKIV KVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of Lag0005770 vs. NCBI nr
Match: XP_022939767.1 (60S ribosomal protein L34 [Cucurbita moschata] >KAG7016140.1 60S ribosomal protein L34 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.0 bits (515), Expect = 1.5e-48
Identity = 107/120 (89.17%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MVQHLTYRKRHSYAIKSNQHRVVKTLGGKLVYQTTKKRASGPKCPVTGKRIQRIPHLRPA 60
           MVQ LTYRKRHSYA KSNQHRVVKT GGKL+YQTTKKRASGPKCPVTGKRIQ IPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNCKTVNRAYDGVLSGCAVGEKIIRAFLVEEQKIVNKVLKIQKAKEKLAAKS 120
           EYKRSRLARN +TVNRAY GVLSG AV E+I+RAFLVEEQKIV KVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of Lag0005770 vs. ExPASy Swiss-Prot
Match: P41098 (60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-50
Identity = 105/120 (87.50%), Postives = 110/120 (91.67%), Query Frame = 0


Query: 1   MVQHLTYRKRHSYAIKSNQHRVVKTLGGKLVYQTTKKRASGPKCPVTGKRIQRIPHLRPA 60
           MVQ LTYRKRHSYA KSNQHRVVKT GGKL+YQ+TKKRASGPKCPVTGKRIQ IPHLRP 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNCKTVNRAYDGVLSGCAVGEKIIRAFLVEEQKIVNKVLKIQKAKEKLAAKS 120
           EYKRSRL+RN +TVNRAY GVLSG AV E+IIRAFLVEEQKIV KVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of Lag0005770 vs. ExPASy Swiss-Prot
Match: P40590 (60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 5.2e-49
Identity = 103/120 (85.83%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 1   MVQHLTYRKRHSYAIKSNQHRVVKTLGGKLVYQTTKKRASGPKCPVTGKRIQRIPHLRPA 60
           MVQ LTYR+RHSYA KSNQHRVVKT GGKLVYQTTKKRASGPKCPVTGKRIQ IPHLRP 
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNCKTVNRAYDGVLSGCAVGEKIIRAFLVEEQKIVNKVLKIQKAKEKLAAKS 120
           EYKRSRL+RN +TVNRAY GVLSG AV E+IIRAFLVEEQKIV KVLKIQK KEK AAK+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKN 120

[Close]

BLAST of Lag0005770 vs. ExPASy Swiss-Prot
Match: Q42351 (60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.0e-48
Identity = 100/120 (83.33%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 1   MVQHLTYRKRHSYAIKSNQHRVVKTLGGKLVYQTTKKRASGPKCPVTGKRIQRIPHLRPA 60
           MVQ L YR RHSYA KSNQHR+VKT GGKLVYQTTKKRASGPKCPVTGKRIQ IPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNCKTVNRAYDGVLSGCAVGEKIIRAFLVEEQKIVNKVLKIQKAKEKLAAKS 120
           EYKRSRL+RN +TVNRAY GVLSG AV E+IIRAFLVEEQKIV KVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]

BLAST of Lag0005770 vs. ExPASy Swiss-Prot
Match: Q9LJW6 (60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 5.8e-48
Identity = 100/120 (83.33%), Postives = 105/120 (87.50%), Query Frame = 0


Query: 1   MVQHLTYRKRHSYAIKSNQHRVVKTLGGKLVYQTTKKRASGPKCPVTGKRIQRIPHLRPA 60
           MVQ L YR RHSYA KSNQHR+VKT GGKL YQTT KRASGPKCPVTGKRIQ IPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNCKTVNRAYDGVLSGCAVGEKIIRAFLVEEQKIVNKVLKIQKAKEKLAAKS 120
           EYKRSRLARN +TVNRAY GVLSG AV E+I+RAFLVEEQKIV KVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]

BLAST of Lag0005770 vs. ExPASy Swiss-Prot
Match: Q9FE65 (60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 9.9e-48
Identity = 99/119 (83.19%), Postives = 105/119 (88.24%), Query Frame = 0


Query: 1   MVQHLTYRKRHSYAIKSNQHRVVKTLGGKLVYQTTKKRASGPKCPVTGKRIQRIPHLRPA 60
           MVQ L YR RHSYA KSNQHR+VKT GGKL YQTTKKRASGPKCPVTGKRIQ IPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNCKTVNRAYDGVLSGCAVGEKIIRAFLVEEQKIVNKVLKIQKAKEKLAAK 120
           EYKRSRL+RN +TVNRAY GVLSG AV E+IIRAFLVEEQKIV KVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

The following BLAST results are available for this feature:

BLAST of Lag0005770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_027098139.1	5.0e-49	90.83	60S ribosomal protein L34 [Coffea arabica] >XP_027153728.1 60S ribosomal protein...	[more]
XP_038889603.1	6.6e-49	90.00	60S ribosomal protein L34 [Benincasa hispida]	[more]
XP_038893923.1	8.6e-49	90.83	60S ribosomal protein L34-like [Benincasa hispida]	[more]
XP_004138165.3	1.1e-48	90.00	60S ribosomal protein L34 [Cucumis sativus] >XP_004147322.1 60S ribosomal protei...	[more]
XP_022939767.1	1.5e-48	89.17	60S ribosomal protein L34 [Cucurbita moschata] >KAG7016140.1 60S ribosomal prote...	[more]

BLAST of Lag0005770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41098	1.6e-50	87.50	60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1	[more]
P40590	5.2e-49	85.83	60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1	[more]
Q42351	2.0e-48	83.33	60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1	[more]
Q9LJW6	5.8e-48	83.33	60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1	[more]
Q9FE65	9.9e-48	83.19	60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008195	Ribosomal protein L34Ae	PRINTS	PR01250	RIBOSOMALL34	coord: 66..88 score: 39.75 coord: 26..43 score: 48.02 coord: 44..54 score: 40.91 coord: 13..26 score: 46.94
IPR008195	Ribosomal protein L34Ae	PFAM	PF01199	Ribosomal_L34e	coord: 1..96 e-value: 2.4E-30 score: 104.7
IPR008195	Ribosomal protein L34Ae	PANTHER	PTHR10759	60S RIBOSOMAL PROTEIN L34	coord: 1..120
None	No IPR available	GENE3D	6.20.370.70		coord: 1..37 e-value: 6.3E-18 score: 66.1
None	No IPR available	GENE3D	6.20.340.10		coord: 39..120 e-value: 3.0E-30 score: 106.0
None	No IPR available	PANTHER	PTHR10759:SF14	SUBFAMILY NOT NAMED	coord: 1..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005770.1	Lag0005770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome