Lag0005717 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005717
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionKatanin p60 ATPase-containing subunit A1
Locationchr6: 27103476 .. 27105183 (-)
RNA-Seq ExpressionLag0005717
SyntenyLag0005717
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTCGCGGTTTTCGTCCGTAGTTTCGTTGTCTTCGCCGTCGTTCGTCAGTTCTTCGTGGTGTTCACACGCTGTCCGTCAATTCGTGGTCTTCACACGCTCGTTCGTCATCGTCTTCACAGCACCGTGTACGTCAGTTCGTGGTGTTCACACGTCGTTCGTCAGTTCTTCGTGGTGTTCGCACACCCTATGGAGCCACTTGATAGGTCTGCAAAGCGTATTTATATTCCTCTTCCTAATTTTGTGAGTAGGAAGGAACTTATCAGGATAAATCTAAAAACTGTCGAGGTAAATCAAATACCCATTCATTAACTATCAGAATGTTATTGGACTGATTGTACTTGCATAATTATTTTTGTTAATTCTTATCTCCTTAGGAAATTCGAGATGCTTTATTCTTGAACCAATTGCCTCATGTTTTTCTCTCCTCTTCCGTTTGTTTTGTATTTTATTTTTAATTACTTCTATTGGATTGTTTATCATGGTTTGCAAAGAAATCCTTGTCTTAGCCTATAAGAAATATATTTTAGCTCAAATGGTTGTTGATTTGAACTTACCATGCAATAAACTATTTTCTTAGTCTGAATAAATTTGATGTAAACGAGTTATGATTATCCATACTAGGTGGCTCCTGATGTGAATATCGATTATGTTGCTCGCCCGGACAGAAGGATATAGTGGGGACGATCTCACAAATGTCTGCAGATATGCTTCTTTGAATGGAATGAGACGTAAAATAGCCGGAAAAACTCGCGATGAGATTAAGAATATGCCCAAGGATGAGATTTCAAAGGACCCTGTTGCCATGTGCGACTTTGAAGAAGCATTGAAGAAGGTACAGCGAGGTGTTTCTGCTGCTGATATCGAACGACATGAGAAGTGGTTTTCAGAATTTGGGTCTGCATAAATTACACGCTATCATGAAGATCAGTTACGGATTCACCACTTTCCATTCTGCAAAGTGATTTGTTTATTAATTTTGTTTTTATGATAATCATTGTGTTGTCACGGTGTGATTAATAGTAATCCAAGTGTCTGCTGCCTCTTTTACAGCTTGTAAACCTTTGCTTCCTTTAACCACTGGTTCTATGTAACTTTATCAATTACGAAGAAGTTGAAGTTTCGATTGATATCCATTTCACCAATGAAATGTATTATTTTCTTTTTCTATTATGTTGCTGGAAACTCACTCTATAAAATTAGTTTAAACACTTTTCAGAACCTAGCTTCAATTTATAATACTGGTTTATGTTTATTTAGTTTACTTTTTTTTTAAATATTAAGTTTGGGTTTTGTGTGTGTGTATTATACTGGAGGTTGAGCATTATTGGTGACACCACCAACTCTTGTCTTTACCAGAAAAACTCGAAATGGGGGGGGGGGGGATTTCAGTTTTAAATAGTGAACTAGCTCTTTGCAGCCATTTAGCAACAAAAATCATGAAGGAAGGTTTAATTCTATTTTAAATATTCTGATTTGTTTTGTAGGTACTGTTGTGTGCTCAATCAAAAAGTGTGGGCAAGGAACTTGCAACGCATCTAATGCTTCATTTCTTGGTTTCGATTATGAGTGCAATTTTGGTTGGAGGAAACTCCAAATTGGCTCGTTCTCCTTCGCCTATTGTGTTCTTCCCAACTGTAAGAATCTCTCTCTTCTCCTCTCTCGCTGCAAATGCACTCACACTCTCTGTAGATTGTGCTTTATAG

mRNA sequence

ATGCCGTCGCGGTTTTCGTCCGTAGTTTCGTTGTCTTCGCCGTCGTTCGTCAGTTCTTCGTGGTGTTCACACGCTGTCCGTCAATTCGTGGTCTTCACACGCTCGTTCGTCATCGTCTTCACAGCACCGTGTACGTCAGTTCGTGGTGTTCACACGTCGTTCGTCAGTTCTTCGTGGTGTTCGCACACCCTATGGAGCCACTTGATAGAAGGATATAGTGGGGACGATCTCACAAATGTCTGCAGATATGCTTCTTTGAATGGAATGAGACGTAAAATAGCCGGAAAAACTCGCGATGAGATTAAGAATATGCCCAAGGATGAGATTTCAAAGGACCCTGTTGCCATGTGCGACTTTGAAGAAGCATTGAAGAAGGTACTGTTGTGTGCTCAATCAAAAAGTGTGGGCAAGGAACTTGCAACGCATCTAATGCTTCATTTCTTGGTTTCGATTATGAGTGCAATTTTGGTTGGAGGAAACTCCAAATTGGCTCGTTCTCCTTCGCCTATTGTGTTCTTCCCAACTGTAAGAATCTCTCTCTTCTCCTCTCTCGCTGCAAATGCACTCACACTCTCTGTAGATTGTGCTTTATAG

Coding sequence (CDS)

ATGCCGTCGCGGTTTTCGTCCGTAGTTTCGTTGTCTTCGCCGTCGTTCGTCAGTTCTTCGTGGTGTTCACACGCTGTCCGTCAATTCGTGGTCTTCACACGCTCGTTCGTCATCGTCTTCACAGCACCGTGTACGTCAGTTCGTGGTGTTCACACGTCGTTCGTCAGTTCTTCGTGGTGTTCGCACACCCTATGGAGCCACTTGATAGAAGGATATAGTGGGGACGATCTCACAAATGTCTGCAGATATGCTTCTTTGAATGGAATGAGACGTAAAATAGCCGGAAAAACTCGCGATGAGATTAAGAATATGCCCAAGGATGAGATTTCAAAGGACCCTGTTGCCATGTGCGACTTTGAAGAAGCATTGAAGAAGGTACTGTTGTGTGCTCAATCAAAAAGTGTGGGCAAGGAACTTGCAACGCATCTAATGCTTCATTTCTTGGTTTCGATTATGAGTGCAATTTTGGTTGGAGGAAACTCCAAATTGGCTCGTTCTCCTTCGCCTATTGTGTTCTTCCCAACTGTAAGAATCTCTCTCTTCTCCTCTCTCGCTGCAAATGCACTCACACTCTCTGTAGATTGTGCTTTATAG

Protein sequence

MPSRFSSVVSLSSPSFVSSSWCSHAVRQFVVFTRSFVIVFTAPCTSVRGVHTSFVSSSWCSHTLWSHLIEGYSGDDLTNVCRYASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKVLLCAQSKSVGKELATHLMLHFLVSIMSAILVGGNSKLARSPSPIVFFPTVRISLFSSLAANALTLSVDCAL
Homology
BLAST of Lag0005717 vs. NCBI nr
Match: XP_022150913.1 (katanin p60 ATPase-containing subunit A1 isoform X2 [Momordica charantia])

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-22
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0

Query: 70  EGYSGDDLTNVCRYASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV 127
           EGYSGDDLTNVCR ASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV
Sbjct: 442 EGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV 498

BLAST of Lag0005717 vs. NCBI nr
Match: XP_022150917.1 (katanin p60 ATPase-containing subunit A1 isoform X3 [Momordica charantia])

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-22
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0

Query: 70  EGYSGDDLTNVCRYASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV 127
           EGYSGDDLTNVCR ASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV
Sbjct: 410 EGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV 466

BLAST of Lag0005717 vs. NCBI nr
Match: KAF1882961.1 (hypothetical protein Lal_00003143 [Lupinus albus])

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-22
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0

Query: 70  EGYSGDDLTNVCRYASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV 127
           EGYSGDDLTNVCR ASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV
Sbjct: 477 EGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV 533

BLAST of Lag0005717 vs. NCBI nr
Match: XP_016171262.1 (katanin p60 ATPase-containing subunit A1 [Arachis ipaensis])

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-22
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0

Query: 70  EGYSGDDLTNVCRYASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV 127
           EGYSGDDLTNVCR ASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV
Sbjct: 534 EGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV 590

BLAST of Lag0005717 vs. NCBI nr
Match: XP_015933613.1 (katanin p60 ATPase-containing subunit A1 [Arachis duranensis] >XP_025611065.1 katanin p60 ATPase-containing subunit A1 [Arachis hypogaea] >XP_025671147.1 katanin p60 ATPase-containing subunit A1 [Arachis hypogaea] >QHN94646.1 Katanin p60 ATPase-containing subunit [Arachis hypogaea] >RYR50756.1 hypothetical protein Ahy_A07g037375 [Arachis hypogaea])

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-22
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0

Query: 70  EGYSGDDLTNVCRYASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV 127
           EGYSGDDLTNVCR ASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV
Sbjct: 455 EGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV 511

BLAST of Lag0005717 vs. ExPASy Swiss-Prot
Match: Q9SEX2 (Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana OX=3702 GN=AAA1 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 8.1e-23
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 0

Query: 70  EGYSGDDLTNVCRYASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKVLLC 129
           EGYSGDDLTNVCR AS+NGMRRKIAGKTRDEIKNM KD+IS DPVAMCDFEEA++KV   
Sbjct: 445 EGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDDISNDPVAMCDFEEAIRKVQPS 504

Query: 130 AQSKSVGK 138
             S  + K
Sbjct: 505 VSSSDIEK 512

BLAST of Lag0005717 vs. ExPASy Swiss-Prot
Match: Q5RII9 (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio OX=7955 GN=katna1 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.4e-12
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 69  IEGYSGDDLTNVCRYASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKVLL 128
           +EGYSG D+TNVCR ASL  MRR+I G T +EI+N+PKDE+   P  M DFE ALKKV  
Sbjct: 407 MEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLPKDEMHM-PTTMEDFETALKKV-- 466

Query: 129 CAQSKSV 136
              SKSV
Sbjct: 467 ---SKSV 467

BLAST of Lag0005717 vs. ExPASy Swiss-Prot
Match: Q5U3S1 (Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio OX=7955 GN=katnal1 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.3e-11
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 0

Query: 63  TLWSHLIEGYSGDDLTNVCRYASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEA 122
           T+++  IEGYSG D+TNVCR AS+  MRR+I G + +EI+ + KDE+   PV M DFE A
Sbjct: 404 TVFAEKIEGYSGADITNVCRDASMMAMRRRIQGLSPEEIRALSKDELQM-PVTMEDFELA 463

Query: 123 LKKVLLCAQSKSV 136
           LKK+     SKSV
Sbjct: 464 LKKI-----SKSV 470

BLAST of Lag0005717 vs. ExPASy Swiss-Prot
Match: Q1HGK7 (Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus OX=9031 GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-10
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 69  IEGYSGDDLTNVCRYASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKVLL 128
           +EGYSG D+TNVCR ASL  MRR+I G T +EI+N+ +DE+   P  M DFE ALKKV  
Sbjct: 414 MEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSRDEMHM-PTTMEDFEIALKKV-- 473

Query: 129 CAQSKSV 136
              SKSV
Sbjct: 474 ---SKSV 474

BLAST of Lag0005717 vs. ExPASy Swiss-Prot
Match: O75449 (Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens OX=9606 GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-10
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 69  IEGYSGDDLTNVCRYASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKVLL 128
           +EGYSG D+TNVCR ASL  MRR+I G T +EI+N+ K+E+   P  M DFE ALKKV  
Sbjct: 413 MEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSKEEMHM-PTTMEDFEMALKKV-- 472

Query: 129 CAQSKSV 136
              SKSV
Sbjct: 473 ---SKSV 473

BLAST of Lag0005717 vs. ExPASy TrEMBL
Match: A0A6A4MZ94 (Katanin p60 ATPase-containing subunit A1 OS=Lupinus albus OX=3870 GN=KATNA1 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-22
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0

Query: 70  EGYSGDDLTNVCRYASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV 127
           EGYSGDDLTNVCR ASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV
Sbjct: 458 EGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV 514

BLAST of Lag0005717 vs. ExPASy TrEMBL
Match: A0A6A5N6N1 (Katanin p60 ATPase-containing subunit A1 OS=Lupinus albus OX=3870 GN=KATNA1 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-22
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0

Query: 70  EGYSGDDLTNVCRYASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV 127
           EGYSGDDLTNVCR ASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV
Sbjct: 477 EGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV 533

BLAST of Lag0005717 vs. ExPASy TrEMBL
Match: A0A6J1DC29 (Katanin p60 ATPase-containing subunit A1 OS=Momordica charantia OX=3673 GN=LOC111018943 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-22
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0

Query: 70  EGYSGDDLTNVCRYASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV 127
           EGYSGDDLTNVCR ASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV
Sbjct: 410 EGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV 466

BLAST of Lag0005717 vs. ExPASy TrEMBL
Match: A0A6J1DAQ9 (Katanin p60 ATPase-containing subunit A1 OS=Momordica charantia OX=3673 GN=LOC111018943 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-22
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0

Query: 70  EGYSGDDLTNVCRYASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV 127
           EGYSGDDLTNVCR ASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV
Sbjct: 442 EGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV 498

BLAST of Lag0005717 vs. ExPASy TrEMBL
Match: A0A6J1DC18 (Katanin p60 ATPase-containing subunit A1 OS=Momordica charantia OX=3673 GN=LOC111018943 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-22
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0

Query: 70  EGYSGDDLTNVCRYASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV 127
           EGYSGDDLTNVCR ASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV
Sbjct: 445 EGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKV 501

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022150913.13.9e-2298.25katanin p60 ATPase-containing subunit A1 isoform X2 [Momordica charantia][more]
XP_022150917.13.9e-2298.25katanin p60 ATPase-containing subunit A1 isoform X3 [Momordica charantia][more]
KAF1882961.13.9e-2298.25hypothetical protein Lal_00003143 [Lupinus albus][more]
XP_016171262.13.9e-2298.25katanin p60 ATPase-containing subunit A1 [Arachis ipaensis][more]
XP_015933613.13.9e-2298.25katanin p60 ATPase-containing subunit A1 [Arachis duranensis] >XP_025611065.1 ka... [more]
Match NameE-valueIdentityDescription
Q9SEX28.1e-2376.47Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana OX=3702 GN=AAA1... [more]
Q5RII96.4e-1261.19Katanin p60 ATPase-containing subunit A1 OS=Danio rerio OX=7955 GN=katna1 PE=2 S... [more]
Q5U3S19.3e-1153.42Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio OX=7955 GN=katnal1... [more]
Q1HGK72.1e-1058.21Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus OX=9031 GN=KATNA1 PE=2... [more]
O754492.1e-1058.21Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens OX=9606 GN=KATNA1 PE=1 ... [more]
Match NameE-valueIdentityDescription
A0A6A4MZ941.9e-2298.25Katanin p60 ATPase-containing subunit A1 OS=Lupinus albus OX=3870 GN=KATNA1 PE=3... [more]
A0A6A5N6N11.9e-2298.25Katanin p60 ATPase-containing subunit A1 OS=Lupinus albus OX=3870 GN=KATNA1 PE=3... [more]
A0A6J1DC291.9e-2298.25Katanin p60 ATPase-containing subunit A1 OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1DAQ91.9e-2298.25Katanin p60 ATPase-containing subunit A1 OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1DC181.9e-2298.25Katanin p60 ATPase-containing subunit A1 OS=Momordica charantia OX=3673 GN=LOC11... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.60coord: 55..124
e-value: 1.3E-10
score: 43.3
NoneNo IPR availablePANTHERPTHR23074:SF156KATANIN P60 ATPASE-CONTAINING SUBUNIT A1coord: 69..136
NoneNo IPR availablePANTHERPTHR23074AAA DOMAIN-CONTAININGcoord: 69..136

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005717.1Lag0005717.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051013 microtubule severing
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005874 microtubule
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity
molecular_function GO:0016853 isomerase activity
molecular_function GO:0008017 microtubule binding
molecular_function GO:0008568 microtubule-severing ATPase activity