Lag0005707 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005707
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGag/pol protein
Locationchr6: 26784213 .. 26788306 (-)
RNA-Seq ExpressionLag0005707
SyntenyLag0005707
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCTAAGAACTATTGGAATATGAGTTATTCTGGTAATAGGGATTGGCTGAGATTGTCTCAATTCAGAGGAGGAGTGGCTGACTGCCCTACGGTGCTTGTTGCTCTAAACCTCTGAAGTATCGTTGTCAATATGTATCATACTTTTGGGTCGATGATTACTTTTGCTAAATTGATTGAATTAAAAAAATATTGTTTTGTGTAATGGGTTTAGTGCATAACAAGTAATTTGTTGTTTCAGTGATAATTTCTATGTGAATTGTCTTACGCCAATTTATTGATAACGATTTTAGATACAACTAACTTAAACGACAAACTTGTGGTAAACGATTTTAGATTAGTCTTGAGTGAGGAATGTCCTCAGGCCCAAATGTCTAGTTCATCTTGAATCGTTTATGATGATTATGACATTAACTGCCTAGAAAATGTCGATGACAATGGATGTGATTTATTGGTCATTGAAACGTGCATAGTGGAAAATGAGGATACAGCCTGAATTTTTTAATTCAGGTGCCACTTATCACGTTTGCTTTTCCTTTCAAGGAATAAGCTCATGGCAACTGTTCTAAGTAGGTGAGATGACTCTCAGATTTTGATCTGGAGAGTATGTCTCGACTATGGCAGAAGGGTACATTAAGTTATTTTATCTAGTGGGAGAAAATACACATTATTAGATAATGTATATGAATTTCCTAAAGATTAACAGAAATTTGATTTATGTATCTTACATGCTGGAAAAATGTTACTCTATACCTTTCTCTGCTAACGCAGATTTATTTTAAGAAAGGGAGTTGACATTTGTTCAGCTTTACTGGAAAATAACTTATGTGTTTTAAGACTAACCGAGAGTAAAGCAAGTCATGAGCATTGAGTTGCTTAAGATTTCTTATACTCAAAGAAATAAAGACAAAGGATATCTCCTAAAGGAAATACCTTTCTTTGGTTCTTAAGGTTAGGCTATTTTGATCTCAATATGATTGGGAGCTTAGTCTAGAGTATACTTCTAAGTTAGTTAGAAAAAGACTCTTTAATACCAATTAAGTCATGCCTTATGGGCAATATGACTGATAGATCTTTTACTGGAAAAGAGCTAAAAGAGCCAAAGAGCCCTTGGAGCTTGTACATTTGTATCCTTGTGATCTAGTATGTTAAAGAAGTGGGAGGGTATGAATAATTTGTCTATGTTATAGATGATTATTCATAGGTATGAATATCTCTACCTAATGCAACATAAGTTTGAATCTCTTGAGATATTTAAAAGGGCTTAAGACTGAAGTTGAAACGTTGTTAGGTGAGATAATAAAAACACTTTGATCTGATCAATGTGTTGAGTACAGGGACTTGAGATTCCATAACTATGTGATAGTACATGGGATCACATCCTAAATCTCAGTTAGGAGTAATAGAACCCTATTGGATATGGTTCAACCCATATTGAGCTATGTTCAATTGTCTGGCTCGTTTTGGGGTCATGAAGTGTTGACTTCATTACATACTTTGTAGGTTACCCCAAAGAAAATGAGGAGTGGATATTTCTTCAATCCATAAGAGAAATACGAATTTGTATTTGACAAATGCTACATTCTCGAAAGAAGACCAAATGAGCAATCATAAGCCAAAAAGTAAAGTCAGTTTGACTGTATTAACTAATGAAGCTATAGAAAAATCAACAAGAGTTGTTGATAAGACTGGTTATTCAATAAGAGTTGTTGATAAATCCAATGTTTTTTGTCAAGTCACATCCATCTCAAGAGTTGAGAATGCCTTGATGTAGTGGGAGGGTTGTTTTATAACCTGACCGTTACATGGGCTTATTTGAAGCTCAAGTCATTATTCTTGATGATGACATAGAGGATTCATTATCTTTTAGAAAGAAAATGAATGATGTTGACAAGGACCAATAGTTTAAAGCCATGGACCTGGAAATGAAGTCTTTGAATTTTAATTCCATCTGGGATCTTGTAAATTTGCTTGATAGGGTAAAACCTATAGGTTACAAGTGGATTTACAAGAGGAAACGAGACATTTAAGGTCTCAACCAGAAGGGTCCATTGAGCAAGATCAAAAGCAAAAGGGTTTGCAAGTTTAAGTGATCCATTCATGGATTGACCTAAGCATTTCGATCTTGGAATATAAGATTTGATATGGTGATCAGATCTTTTGGCTTTAATCAGGACATTGATGAGTCTTGTATCTACAAGAAGATCGTCAGTAGTACAGTAGCTTTCTTCATGTTGTATGTGATTGATATCCTACTCATTTAGAATAAGTAGGTTAACTTATTGACATTAAATGTGACTAGCAGTTCATTTCCAAATAAAAGTTGGGAGAAGCTTAGTTTGTTCTTATGTTCTAAATTTTTTAAAACAGTAAGAACAAAATGCTAGCCATGGTTAAAGCGTTTTATATCTATAAATGTTGATTAGATATGAGATGTAGAATTCTAAGAAGTGTTCACGACCTTTCAGGGTAGAATTCTTTTGTCTAAGGAACTGTGTTCTTAGACACCTCAAGGAGTTGAGGAATTCCCTATGCAATAGGCAATGTCAATGCGTATCAATCTAATCCAGGATATGATCACTGGAGAACCGTTAACTATATTCTCAAGTATCTTTGGAGAATGAGGAACTATATGCTCGTGTATGGCGCTAAGGATTTGATCCTTACAGGATACACTGACACAGATGTTTTAACTGGTAAGGATTTAATGAAATCTTCATCAGTGTCTGTCTTCACTCTTAAATAGAGGAGATATAGTATGGCATCGCATCAAGCTAGGATGCAAAGCAACCTCGACCTATTGGCCGAAAACTACGCTGTTTGTGAAGCAGCGATCGAGGCTGTAAGACTTGGAAAGTTCATGGTTGATTTGGAAAGTGTTCCAAATATGAACATACCTAATATAAGACAAGCATGCACATTGAATAGGATGGAAGTATTGTTGATCATTCACGAAGGCTCTCTTGGCTAAGTGTATGAGGGTCATCTAGATGGTCTAGATCTATGAGATAAGTACAAAGATGTAATCTAGGGCAAGTGGGAGAAATGTAATGGGTATAGTGGATGCCCTAGTTTATTGTATTTGTACATAATATATATACGTTTTATGTATTATACATGTATCTATACACTGATTGCCATGATAGATTATTGTACATCCCACTAAGCTAGAGTTTTAGTTCAAGTGGTAGTTGTTGGGTTTTATGCCCTAAAACTCATAGGTAGTGAATGATGGCAAATTGTTCACTTGTCTCAATACGTTGTTGTTGAGGTTTGTACAATAAAGAGTTATTGTTACTAAAATTGCATAATTTGACCCAAATCCAATAAACTAAGATCCTAGGTTTTTTAGATGAAACTTGAACTAGTATGTGGGGACATACGGGGATCAGTGTTCAAGTAACAACCTAAATGGTCTATAGTATAGGGATAAGGCTGTTGGTTTTATGCCCTAAAACTCGTAGATAGTAAATGTACATTTGACCGAGCATTAATAAAGTGATGTATTATTCAATGTTTGTATTATATCTTGTCTTAATAACCCTAATCCAATAAACTAAACATCCAAGGCTAATAGAATGAGGCTTGAACTGGTATGTAGGGACATACGGGGATCAATGTTCAAGTTTTAGCCTAAAGGGTCTGTAGTATAGAGACAAGGCTGGGTACCTTGTCCTGGTGACACTATGGATATGGCCCGCTTTGTATATTGATACAAACGTAGTGATCCAACGCGTTCATGTGGTTGACATGCGAGTGGGGGTATCCTGTGCAATGAGTTTGCACAAAGACCGGACCGCGAAATAGTTAACCACTAACTGTAACACCGTTAGTTAGCTCGGTTTCTATTTCACTAGGATGACTGATAACTGCCCAAAAGGTAGTTATTTAGGCCTCATTTATATAAGGATTTGTGTGTCTTTTATGCTTATTAGGGTTGGTTTTAGAGAGAGATTACATGATTTAACCCATTTGGAAGAATGGAAGCTTTGGAAATCACTTTATGCAGATTATGCTGTTGAGCGGCCAGAGGAGCAAATTCTATGCTGCAGCAAAACTAAGAGCAGAAACTGCCACATCACAGCTCGTTAG

mRNA sequence

ATGGAAGCTAAGAACTATTGGAATATGAGTTATTCTGGTAATAGGGATTGGCTGAGATTGTCTCAATTCAGAGGAGGAGTGGCTGACTGCCCTACGATCTTTTACTGGAAAAGAGCTAAAAGAGCCAAAGAGCCCTTGGAGCTTGTACATTTGTATCCTTGTGATCTAGGTAAAACCTATAGGTTACAAGTGGATTTACAAGAGGAAACGAGACATTTAAGGTCTCAACCAGAAGGGTCCATTGAGCAAGATCAAAAGCAAAAGGGCAATGTCAATGCGTATCAATCTAATCCAGGATATGATCACTGGAGAACCGTTAACTATATTCTCAAGTATCTTTGGAGAATGAGGAACTATATGCTCGTGTATGGCGCTAAGGATTTGATCCTTACAGGATACACTGACACAGATGTTTTAACTGATTATGCTGTTGAGCGGCCAGAGGAGCAAATTCTATGCTGCAGCAAAACTAAGAGCAGAAACTGCCACATCACAGCTCGTTAG

Coding sequence (CDS)

ATGGAAGCTAAGAACTATTGGAATATGAGTTATTCTGGTAATAGGGATTGGCTGAGATTGTCTCAATTCAGAGGAGGAGTGGCTGACTGCCCTACGATCTTTTACTGGAAAAGAGCTAAAAGAGCCAAAGAGCCCTTGGAGCTTGTACATTTGTATCCTTGTGATCTAGGTAAAACCTATAGGTTACAAGTGGATTTACAAGAGGAAACGAGACATTTAAGGTCTCAACCAGAAGGGTCCATTGAGCAAGATCAAAAGCAAAAGGGCAATGTCAATGCGTATCAATCTAATCCAGGATATGATCACTGGAGAACCGTTAACTATATTCTCAAGTATCTTTGGAGAATGAGGAACTATATGCTCGTGTATGGCGCTAAGGATTTGATCCTTACAGGATACACTGACACAGATGTTTTAACTGATTATGCTGTTGAGCGGCCAGAGGAGCAAATTCTATGCTGCAGCAAAACTAAGAGCAGAAACTGCCACATCACAGCTCGTTAG

Protein sequence

MEAKNYWNMSYSGNRDWLRLSQFRGGVADCPTIFYWKRAKRAKEPLELVHLYPCDLGKTYRLQVDLQEETRHLRSQPEGSIEQDQKQKGNVNAYQSNPGYDHWRTVNYILKYLWRMRNYMLVYGAKDLILTGYTDTDVLTDYAVERPEEQILCCSKTKSRNCHITAR
Homology
[Close]
BLAST of Lag0005707 vs. NCBI nr
Match: TYK00234.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 4.7e-13
Identity = 41/53 (77.36%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 89  GNVNAYQSNPGYDHWRTVNYILKYLWRMRNYMLVYGAKDLILTGYTDTDVLTD 142
           G V  YQSNPG DHW TV  ILKYL RMR+YMLVYGAKDLILTGYTD+D  TD
Sbjct: 718 GIVRRYQSNPGLDHWTTVKIILKYLKRMRDYMLVYGAKDLILTGYTDSDFQTD 770

[Close]
BLAST of Lag0005707 vs. NCBI nr
Match: KAA0041818.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK05340.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-12
Identity = 40/53 (75.47%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 89  GNVNAYQSNPGYDHWRTVNYILKYLWRMRNYMLVYGAKDLILTGYTDTDVLTD 142
           G V+ YQSNPG DHW  V  ILKYL RMR+YMLVYGAKDLILTGYTD+D  TD
Sbjct: 16  GIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTD 68

[Close]
BLAST of Lag0005707 vs. NCBI nr
Match: KAA0045325.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-12
Identity = 40/53 (75.47%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 89  GNVNAYQSNPGYDHWRTVNYILKYLWRMRNYMLVYGAKDLILTGYTDTDVLTD 142
           G VN YQSNPG DHW  V  ILKYL R R+YMLVYGAKDLILTGYTD+D  TD
Sbjct: 298 GIVNRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDSDFQTD 350

[Close]
BLAST of Lag0005707 vs. NCBI nr
Match: KAA0061170.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-12
Identity = 40/53 (75.47%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 89  GNVNAYQSNPGYDHWRTVNYILKYLWRMRNYMLVYGAKDLILTGYTDTDVLTD 142
           G V+ YQSNPG DHW TV  ILKYL R R+YMLVYGAKDLILTGYTD+D  TD
Sbjct: 196 GIVSRYQSNPGLDHWTTVKIILKYLRRTRDYMLVYGAKDLILTGYTDSDFQTD 248

[Close]
BLAST of Lag0005707 vs. NCBI nr
Match: TYK04221.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-12
Identity = 39/54 (72.22%), Postives = 43/54 (79.63%), Query Frame = 0 

Query: 88  KGNVNAYQSNPGYDHWRTVNYILKYLWRMRNYMLVYGAKDLILTGYTDTDVLTD 142
           +G V+ YQSNPG DHW TV  ILKYL R +NYMLVYG KDLILTGYTD+D  TD
Sbjct: 28  RGMVSRYQSNPGRDHWTTVKNILKYLKRTKNYMLVYGTKDLILTGYTDSDFQTD 81

[Close]
BLAST of Lag0005707 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 6.5e-05
Identity = 23/53 (43.40%), Postives = 30/53 (56.60%), Query Frame = 0 

Query: 89   GNVNAYQSNPGYDHWRTVNYILKYLWRMRNYMLVYGAKDLILTGYTDTDVLTD 142
            G V+ +  NPG +HW  V +IL+YL       L +G  D IL GYTD D+  D
Sbjct: 1134 GVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGD 1186

The following BLAST results are available for this feature:
BLAST of Lag0005707 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK00234.14.7e-1377.36gag/pol protein [Cucumis melo var. makuwa][more]
KAA0041818.11.4e-1275.47gag/pol protein [Cucumis melo var. makuwa] >TYK05340.1 gag/pol protein [Cucumis ... [more]
KAA0045325.11.8e-1275.47gag/pol protein [Cucumis melo var. makuwa][more]
KAA0061170.11.8e-1275.47gag/pol protein [Cucumis melo var. makuwa][more]
TYK04221.12.4e-1272.22gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of Lag0005707 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P109786.5e-0543.40Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005707.1Lag0005707.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding