Lag0005656 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005656
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr6: 25280678 .. 25281824 (-)
RNA-Seq ExpressionLag0005656
SyntenyLag0005656
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCATTTATTACCTCAAGCGTCGCATTTTTCGAGCGAGAAGGACTAGTTCCATACCTGGCCTTTTTAAGGTGGATGGTCGGCCTCGGCCTTGGCATGAGGCTGACCAGCAGCTCTGTACTCTTTGCTCGTCGACGTCTAGGCTTGTGTGCAGATTTGCCCGACCCTACTTTAAGCATCTCCTTGCGGCTTTGAGCGCCTCGACTGTGCTAAAAAGTAAAGTGACTGAGAACTCGAAACAGTCACGCTGCTTTGAATGTGTGCCTGATGGTTGGCCTCGGAGCTGGGATGCTCGACCTTGGCATGAGGTCGAACATTTCTTCTACTTTGCTTGCTAATTTGCTCTGTTGTATCCATCCCGACGGTGCGTACACTCTTCCGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGCTTCTGTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCTAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCTGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAAGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCTAGGGGTGCATACACTCTTCTGGGGAAAAGGCTTAGGGAGGCCTAGGAAATTTCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGGTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCAGGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGGTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCAGTCGGGGAAAGTACGGAAATCTGGCCTCTACAAGGATTGTTCCTGTCTAGCCACATGCGTTACATCCTATGGAAAAAGCACTTTATGCAAAACACCACGCCATGGACATGTGTTATACGAAATGAAAATAAATGATCTTATACATATAGTTCCACCGCTATTCATAACGCAATTCTAA

mRNA sequence

ATGGGCATTTATTACCTCAAGCGTCGCATTTTTCGAGCGAGAAGGACTAGTTCCATACCTGGCCTTTTTAAGGTGGATGGTCGGCCTCGGCCTTGGCATGAGGCTGACCAGCAGCTCTGTACTCTTTGCTCGTCGACGTCTAGGCTTGTGTGCAGATTTGCCCGACCCTACTTTAAGCATCTCCTTGCGGCTTTGAGCGCCTCGACTGTGCTAAAAAGTAAAGTGACTGAGAACTCGAAACAGTCACGCTGCTTTGAATGTGTGCCTGATGGTTGGCCTCGGAGCTGGGATGCTCGACCTTGGCATGAGGGGTGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCTAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGGGTGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAAGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCTAGGGGTGCATACACTCTTCTGGGGAAAAGGCTTAGGGAGGCCTAGGAAATTTCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGGTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCAGGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGGTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCAGTCGGGGAAAGTACGGAAATCTGGCCTCTACAAGGATTGTTCCTGTCTAGCCACATGCGTTACATCCTATGGAAAAAGCACTTTATGCAAAACACCACGCCATGGACATGTGTTATACGAAATGAAAATAAATGATCTTATACATATAGTTCCACCGCTATTCATAACGCAATTCTAA

Coding sequence (CDS)

ATGGGCATTTATTACCTCAAGCGTCGCATTTTTCGAGCGAGAAGGACTAGTTCCATACCTGGCCTTTTTAAGGTGGATGGTCGGCCTCGGCCTTGGCATGAGGCTGACCAGCAGCTCTGTACTCTTTGCTCGTCGACGTCTAGGCTTGTGTGCAGATTTGCCCGACCCTACTTTAAGCATCTCCTTGCGGCTTTGAGCGCCTCGACTGTGCTAAAAAGTAAAGTGACTGAGAACTCGAAACAGTCACGCTGCTTTGAATGTGTGCCTGATGGTTGGCCTCGGAGCTGGGATGCTCGACCTTGGCATGAGGGGTGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCTAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGGGTGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAAGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCTAGGGGTGCATACACTCTTCTGGGGAAAAGGCTTAGGGAGGCCTAGGAAATTTCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGGTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCAGGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGGTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCAGTCGGGGAAAGTACGGAAATCTGGCCTCTACAAGGATTGTTCCTGTCTAGCCACATGCGTTACATCCTATGGAAAAAGCACTTTATGCAAAACACCACGCCATGGACATGTGTTATACGAAATGAAAATAAATGATCTTATACATATAGTTCCACCGCTATTCATAACGCAATTCTAA

Protein sequence

MGIYYLKRRIFRARRTSSIPGLFKVDGRPRPWHEADQQLCTLCSSTSRLVCRFARPYFKHLLAALSASTVLKSKVTENSKQSRCFECVPDGWPRSWDARPWHEGCVHSSGEKAWGGLGSSRASLQAVTVIPGGCVHSSGEKAWGSLGNSRASLQAVMVILGVHTLFWGKGLGRPRKFPSLSSSCHGHPRGAYTLLGKRLGRPRKFPSLSSSCQGHPRGAYTLLGKRLGRPRKFPSLSSSCHGHPRGAYTQSGKVRKSGLYKDCSCLATCVTSYGKSTLCKTPRHGHVLYEMKINDLIHIVPPLFITQF
Homology
The following BLAST results are available for this feature:
BLAST of Lag0005656 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0005656 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0005656 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0005656 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017956AT hook, DNA-binding motifSMARTSM00384AT_hook_2coord: 196..208
e-value: 4.8
score: 11.4
coord: 224..236
e-value: 4.8
score: 11.4
coord: 168..180
e-value: 3.1
score: 12.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005656.1Lag0005656.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding