Lag0005642 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005642
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr6: 24729781 .. 24731194 (-)
RNA-Seq Expression	Lag0005642
Synteny	Lag0005642

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGACCGTCAGACCCATGGTCCACCGCTATCTTGTGTGTTTGTTATGAGCCGCCGTCGGGGAAGAAGAATCGAGAGGAGGCTTACCGGCTATTTGGTTTGAAGCTTCTGCTGCACGTCGTCAATTGGTCGTGGGTTGTGTTGAAAAGAACCTCGTCGGCGAGCACGAGAAAGAAAGATTTTTTTTTTTTTTTTTTTGTATATTCGGCCACTGCTGGTCATTGGAGAAAGGCAGATGTGGCGGTACTGTTGGTACCGAGAGAATAGAAAAAAAGAAGAAAAATTGAAGATGTGGTGGAGAGAGAAGAAGATGATGATGGGAGGGAGAGAGAAAGAAAGAAACACTTTTTTTTCTTTCTTAAATTCTCACGCAACTCCATTTTTTTTTCAATTATTTTGTTTTGTCCAATGCTCAACATGCGTTTTTTTTTTCAGCCCAATATTTTTTTCAAACAATTTTCACCCTTTTATATATATATATATATATATATTGTTTTTTTTTTTAACTTAACCATTTTTTTGTATGCTACAACTTTTTTTTTCTCTTGATTTTCAACTTTTCTTTTCAAATTTCTTTTTTTTCTTCATCTTTTTTTTTTTTACTTACAAATAAGATATTTCTTTCAACTGCCAAACTTTGAAGGTAGAGCGGAACGAGGCCATCAACTGCCACCGACTTTGAAGATGGAGCGGAACGAGCCCGTCAACTGTCAACATTTGATGGAGCGAGGCCGAAGCCGTCAACCGCCAACATTTGAAGATGGAGAGAAGTCGAAGCTGTCAACCGTCGACTTTGGAGATGAAGCGGAACGAGGTTGAAGATGAAGTGAAGCTTACCTTGGGAAGTGATCAATCCCTGATTCAGGCAGAATTCAAGATGGTCTCTCGCCCTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTCTCTCGCCCTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTTAGGATGGTCACTCGCCCTTCACATCTTGCCTCAGACAGTGATCAACCCCTGATTCAGGCAGAATTCAGGATGGTCTCTCGCCCTCACATCTTGCCTCAGGCAGTGATCAACCCATGATTCAGGCGGAATTCAGGATGGTCACTTGTTCTTCACATCTTGCCTCAGGCAGTGATCAACCTCTGATTCAGGTGGAATTCAGGATGGTCACTTGCCATTCACATCTTGCCTCAGGAAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGATCACTCGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCCGATTCAGGCAGAATGCAGGCTGGTCACTTGCCCACTTGCACCGCCAACCTTTGAAGATGAAGCGAGGCTAAAGCTGTCAACCACCAACATTTGA

mRNA sequence

ATGAGTAGACCGTCAGACCCATGGTCCACCGCTATCTTGTGTGTTTGTTATGAGCCGCCGTCGGGGAAGAAGAATCGAGAGGAGGCTTACCGGCTATTTGGTAGAGCGGAACGAGGCCATCAACTGCCACCGACTTTGAAGATGGAGCGGAACGAGCCCGTCAACTGTCAACATTTGATGGAGCGAGGCCGAAGCCGTCAACCGCCAACATTTGAAGATGGAGAGAAGTCGAAGCTGTCAACCGTCGACTTTGGAGATGAAGCGGAACGAGGCAGAATTCAGGATGGTCTCTCGCCCTCACATCTTGCCTCAGGCAGTGATCAACCCATGATTCAGGCGGAATTCAGGATGGTCACTTGTTCTTCACATCTTGCCTCAGGCAGTGATCAACCTCTGATTCAGGTGGAATTCAGGATGGTCACTTGCCATTCACATCTTGCCTCAGGAAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGATCACTCGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCCGATTCAGGCAGAATGCAGGCTGGTCACTTGCCCACTTGCACCGCCAACCTTTGAAGATGAAGCGAGGCTAAAGCTGTCAACCACCAACATTTGA

Coding sequence (CDS)

ATGAGTAGACCGTCAGACCCATGGTCCACCGCTATCTTGTGTGTTTGTTATGAGCCGCCGTCGGGGAAGAAGAATCGAGAGGAGGCTTACCGGCTATTTGGTAGAGCGGAACGAGGCCATCAACTGCCACCGACTTTGAAGATGGAGCGGAACGAGCCCGTCAACTGTCAACATTTGATGGAGCGAGGCCGAAGCCGTCAACCGCCAACATTTGAAGATGGAGAGAAGTCGAAGCTGTCAACCGTCGACTTTGGAGATGAAGCGGAACGAGGCAGAATTCAGGATGGTCTCTCGCCCTCACATCTTGCCTCAGGCAGTGATCAACCCATGATTCAGGCGGAATTCAGGATGGTCACTTGTTCTTCACATCTTGCCTCAGGCAGTGATCAACCTCTGATTCAGGTGGAATTCAGGATGGTCACTTGCCATTCACATCTTGCCTCAGGAAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGATCACTCGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCCGATTCAGGCAGAATGCAGGCTGGTCACTTGCCCACTTGCACCGCCAACCTTTGAAGATGAAGCGAGGCTAAAGCTGTCAACCACCAACATTTGA

Protein sequence

MSRPSDPWSTAILCVCYEPPSGKKNREEAYRLFGRAERGHQLPPTLKMERNEPVNCQHLMERGRSRQPPTFEDGEKSKLSTVDFGDEAERGRIQDGLSPSHLASGSDQPMIQAEFRMVTCSSHLASGSDQPLIQVEFRMVTCHSHLASGSDQPLIQAEFRMITRPSHLASGSDQPPIQAECRLVTCPLAPPTFEDEARLKLSTTNI

Homology

[Close]

BLAST of Lag0005642 vs. NCBI nr
Match: CAE1322405.1 (unnamed protein product [Sepia pharaonis])

HSP 1 Score: 56.2 bits (134), Expect = 3.8e-04
Identity = 35/82 (42.68%), Postives = 38/82 (46.34%), Query Frame = 0


Query: 99  PSHLASGSDQPMIQAEFRMVTCSSHLASGSDQPLIQVEFRMVTCH---SHLASGSDQPLI 158
           PSHL S SD P I          +HL S SD P I   F  +TC+   SHL S S  P I
Sbjct: 113 PSHLPSSSDSPAILFRLTCYPLPTHLLSSSDSPAI---FFRLTCYPLPSHLLSSSVSPAI 172

Query: 159 QAEFRMITRPSHLASGSDQPPI 178
                    PSHL S SD P I
Sbjct: 173 LFRLTCYLLPSHLLSYSDSPAI 191

The following BLAST results are available for this feature:

BLAST of Lag0005642 vs. NCBI nr


Match Name	E-value	Identity	Description
CAE1322405.1	3.8e-04	42.68	unnamed protein product [Sepia pharaonis]	[more]

BLAST of Lag0005642 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0005642 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0005642 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005642.1	Lag0005642.1	mRNA