Lag0005636 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005636
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr6: 24598061 .. 24598630 (+)
RNA-Seq ExpressionLag0005636
SyntenyLag0005636
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATGCTGATTTCTCATCTTAAGGCTGCGAAAACAGATCCTATTGCTGTGGCTACTGTTGTTTCACATGTAACAGGTATTTGCTCTATGGCCTCTTCTGTTAATTCCCTTGCTAATCGATGGATTATCGACTCTGGGGCATCTCACCACATCTGTCATAATAAGTCTGCTTTCTGTAATTGGCATCACATTGATCCCATGTCTGTTATATTGCCTACCACTTACAAAGTTCTTGTTGAATATGTTGGTAATGTTATCATTTCTGATTCATTGGTTCTTCATGTTGTCTTGTTCATCCCGGATTTTGGTTACAACTTGGTATCTGTCAGCGGCCTACTACAAGCCTCAGATATTTCTGTTTTGTTTTCTAATACTGAATGCATCATACAGGACAAACGTCTATTAACAATGATTGGCAAGGCTGATTGTCATCATGGTCTTAACCTGCTTTCTGAGTCCTCGGCACCTAAGGTTTCTAGTCCTGTATGTTCAGTTTCTTCTGCTGTTTGGCACAGTCGTTTAGGGCATTTATCACCTAAACGTTTAAACTTGTTGAAAGATGCTTAA

mRNA sequence

ATGGATATGCTGATTTCTCATCTTAAGGCTGCGAAAACAGATCCTATTGCTGTGGCTACTGTTGTTTCACATGTAACAGGTATTTGCTCTATGGCCTCTTCTGTTAATTCCCTTGCTAATCGATGGATTATCGACTCTGGGGCATCTCACCACATCTGTCATAATAAGTCTGCTTTCTGTAATTGGCATCACATTGATCCCATGTCTGTTATATTGCCTACCACTTACAAAGTTCTTGTTGAATATGTTGGTAATGTTATCATTTCTGATTCATTGGTTCTTCATGTTGTCTTGTTCATCCCGGATTTTGGTTACAACTTGGTATCTGTCAGCGGCCTACTACAAGCCTCAGATATTTCTGTTTTGTTTTCTAATACTGAATGCATCATACAGGACAAACGTCTATTAACAATGATTGGCAAGGCTGATTGTCATCATGGTCTTAACCTGCTTTCTGAGTCCTCGGCACCTAAGGTTTCTAGTCCTGTATGTTCAGTTTCTTCTGCTGTTTGGCACAGTCGTTTAGGGCATTTATCACCTAAACGTTTAAACTTGTTGAAAGATGCTTAA

Coding sequence (CDS)

ATGGATATGCTGATTTCTCATCTTAAGGCTGCGAAAACAGATCCTATTGCTGTGGCTACTGTTGTTTCACATGTAACAGGTATTTGCTCTATGGCCTCTTCTGTTAATTCCCTTGCTAATCGATGGATTATCGACTCTGGGGCATCTCACCACATCTGTCATAATAAGTCTGCTTTCTGTAATTGGCATCACATTGATCCCATGTCTGTTATATTGCCTACCACTTACAAAGTTCTTGTTGAATATGTTGGTAATGTTATCATTTCTGATTCATTGGTTCTTCATGTTGTCTTGTTCATCCCGGATTTTGGTTACAACTTGGTATCTGTCAGCGGCCTACTACAAGCCTCAGATATTTCTGTTTTGTTTTCTAATACTGAATGCATCATACAGGACAAACGTCTATTAACAATGATTGGCAAGGCTGATTGTCATCATGGTCTTAACCTGCTTTCTGAGTCCTCGGCACCTAAGGTTTCTAGTCCTGTATGTTCAGTTTCTTCTGCTGTTTGGCACAGTCGTTTAGGGCATTTATCACCTAAACGTTTAAACTTGTTGAAAGATGCTTAA

Protein sequence

MDMLISHLKAAKTDPIAVATVVSHVTGICSMASSVNSLANRWIIDSGASHHICHNKSAFCNWHHIDPMSVILPTTYKVLVEYVGNVIISDSLVLHVVLFIPDFGYNLVSVSGLLQASDISVLFSNTECIIQDKRLLTMIGKADCHHGLNLLSESSAPKVSSPVCSVSSAVWHSRLGHLSPKRLNLLKDA
Homology
BLAST of Lag0005636 vs. NCBI nr
Match: KAA0065480.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >TYK08721.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 1.0e-35
Identity = 87/189 (46.03%), Postives = 122/189 (64.55%), Query Frame = 0

Query: 1   MDMLISHLKAAKTDPIAVATVVSHVTGICSMASSVNSLANRWIIDSGASHHICHNKSAFC 60
           M +L +HL+AA T PI  AT ++H +GI ++ S  N   + WIIDSGAS HICH+KS F 
Sbjct: 339 MTLLNNHLQAATTAPITTATAITHTSGIFALTSHNNQSHDEWIIDSGASRHICHDKSLFK 398

Query: 61  NWHHIDPMSVILPTTYKVLVEYVGNVIISDSLVLHVVLFIPDFGYNLVSVSGLLQASDIS 120
           NW H + M V+LP  +++ V+ +G++ I+ SL L  VLF+  F YNL+SVS LL   +IS
Sbjct: 399 NWSHTNNMFVMLPNGHRISVDLIGDIQINGSLTLKDVLFVSQFAYNLISVSCLLITKNIS 458

Query: 121 VLFSNTECIIQDKRLLTMIGKADCHHGLNLLSE---SSAPKVSSPVCSVSSAVWHSRLGH 180
           + F +T CIIQD     MIGKA C +GL +L++   ++       + ++S   WH RLGH
Sbjct: 459 LDFQSTCCIIQDLSRPMMIGKASCQNGLYVLNKEANTNCIAAGVKINAISVDTWHQRLGH 518

Query: 181 LSPKRLNLL 187
           LSPK L+ L
Sbjct: 519 LSPKCLSSL 527

BLAST of Lag0005636 vs. NCBI nr
Match: XP_012857659.1 (PREDICTED: uncharacterized protein LOC105976934 [Erythranthe guttata])

HSP 1 Score: 128.3 bits (321), Expect = 7.2e-26
Identity = 75/178 (42.13%), Postives = 104/178 (58.43%), Query Frame = 0

Query: 12  KTDPIAVATVVSHVTGIC--SMASSVNSLANRWIIDSGASHHICHNKSAFCNWHHIDPMS 71
           K   I   + +S VTGIC  +   + + + + WI+DSGAS HICHNKS F N   +    
Sbjct: 373 KNSEIFDTSHISRVTGICLFNALHTPSFMPHHWILDSGASRHICHNKSLFLNMKSVSNAR 432

Query: 72  VILPTTYKVLVEYVGNVIISDSLVLHVVLFIPDFGYNLVSVSGLLQASDISVLFSNTECI 131
           V+LP +  VLV  +G+V ++  LVLH V ++P+F +NLVSVS LL  S   V+F      
Sbjct: 433 VVLPDSSMVLVNCIGDVQLTTHLVLHNVFYVPEFKFNLVSVSALLHGSSYVVIFDEFSFS 492

Query: 132 IQDKRLLTMIGKADCHHGLNLLSESSAPKVSSPVCS-VSSAVWHSRLGHLSPKRLNLL 187
           IQD RL+T IGK +   GL +L   SA  +    C+ +S+ VWH RLGH+   +L  L
Sbjct: 493 IQD-RLMTQIGKGNKVQGLYVLDPVSASPIEHAFCNKISATVWHHRLGHIPQPKLAFL 549

BLAST of Lag0005636 vs. NCBI nr
Match: XP_019420691.1 (PREDICTED: uncharacterized protein LOC109330875 [Lupinus angustifolius])

HSP 1 Score: 120.2 bits (300), Expect = 2.0e-23
Identity = 65/174 (37.36%), Postives = 101/174 (58.05%), Query Frame = 0

Query: 24  HVTGICSMASSVNSLANR-----WIIDSGASHHICHNKSAFCNWHHIDPMSVILPTTYKV 83
           H         S+NSL+++     WI+DSGA+ H+CH+ S + N+  I P+ + LP   +V
Sbjct: 287 HALDSTDSGKSLNSLSHKIIFDGWILDSGATDHVCHSMSLYLNFKRIKPLLIALPNGNQV 346

Query: 84  LVEYVGNVIISDSLVLHVVLFIPDFGYNLVSVSGLLQASDISVLFSNTECIIQDKRLLTM 143
              + G ++ S+ L L  VL++P F +NLVS+S L  +   ++ FSN  C IQD + L M
Sbjct: 347 TTHHSGTIVFSNDLYLTNVLYVPTFNFNLVSISKLTTSLACTLTFSNNHCQIQDTQSLKM 406

Query: 144 IGKADCHHGLNLLSESSAPKVSSPVCSV-----SSAVWHSRLGHLSPKRLNLLK 188
           IG A+   GL +LS+SS     S   ++      S +WHSRLGHLS K++ +++
Sbjct: 407 IGAAELRGGLYMLSQSSKKYCESTHVNLYTSYDDSNIWHSRLGHLSHKKMTIMQ 460

BLAST of Lag0005636 vs. NCBI nr
Match: KZV37633.1 (hypothetical protein F511_38248 [Dorcoceras hygrometricum])

HSP 1 Score: 115.2 bits (287), Expect = 6.3e-22
Identity = 69/181 (38.12%), Postives = 106/181 (58.56%), Query Frame = 0

Query: 14  DPIAVATVVSHVTGICSMASSVNSLANR-WIIDSGASHHICHNKSAFCNWHHIDPMS--V 73
           +P      +S +TGICS  S  +S+    W++D+GA+HHIC + S F   H + P+S  +
Sbjct: 296 EPQQQEPTISCLTGICSTVSHTSSITQTDWVLDTGATHHICCSLSMF---HSVRPVSSKI 355

Query: 74  ILPTTYKVLVEYVGNVIISDSLVLHVVLFIPDFGYNLVSVSGLLQASDISVLFSNTECII 133
           +LP T  + V  +G+V ++  L+LH VL++P+F +NL+S+S L    + SV F+   C I
Sbjct: 356 MLPNTLTIQVSVIGSVFLTSDLILHDVLYVPEFQFNLLSISALTNNRECSVSFTANSCQI 415

Query: 134 QDKRLLTMIGKADCHHGLNLLSESSAPKVSSPVCSVS---SAVWHSRLGHLSPKRLNLLK 189
           QD +   MIG       L +L +S     +S VC+ S   S +WH R+GH SP +L+ LK
Sbjct: 416 QDIKRTKMIGTGKRLGNLYVLMKS-----TSYVCNASVPKSELWHLRMGHPSPSKLSSLK 468

BLAST of Lag0005636 vs. NCBI nr
Match: KZV36180.1 (hypothetical protein F511_26362, partial [Dorcoceras hygrometricum])

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-21
Identity = 70/186 (37.63%), Postives = 108/186 (58.06%), Query Frame = 0

Query: 7   HLKAAKTDPIAVATVVSHVTGICSMASSVNSLANR-WIIDSGASHHICHNKSAFCNWHHI 66
           H    + +P    + +S +TGICS  S +  +A   W++D+GA+HHIC + S F +   +
Sbjct: 147 HSPNLQAEPQQQESTISCITGICSTVSHIPLIAQTDWVLDTGATHHICCSLSLFHSSRTV 206

Query: 67  DPMSVILPTTYKVLVEYVGNVIISDSLVLHVVLFIPDFGYNLVSVSGLLQASDISVLFSN 126
           +   + LP T+ + V  VG+VI+++ L+LH VL++P F +NL+SVS L      SV F+ 
Sbjct: 207 N-SKITLPNTFTIQVTIVGSVILTNDLILHDVLYVPVFKFNLLSVSSLTNILAYSVSFTA 266

Query: 127 TECIIQDKRLLTMIGKADCHHGLNLLSESSAPKVSSPVCSVSSA---VWHSRLGHLSPKR 186
             C IQD +   MIG       L +L +S     +S +C+VS +   +WH R+GH SP R
Sbjct: 267 DSCQIQDIKRTRMIGTGKRLGNLYVLEKS-----TSYICNVSVSKPELWHLRMGHPSPSR 326

Query: 187 LNLLKD 189
           L+ LKD
Sbjct: 327 LSRLKD 326

BLAST of Lag0005636 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-07
Identity = 46/156 (29.49%), Postives = 76/156 (48.72%), Query Frame = 0

Query: 39  ANRWIIDSGASHHICHNKSAFCNWHHIDPMS----VILPTTYKVLVEYVGNVIISDS--- 98
           +N W++DSGA+HHI    S F N     P +    V++     + + + G+  +S     
Sbjct: 328 SNNWLLDSGATHHI---TSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRP 387

Query: 99  LVLHVVLFIPDFGYNLVSVSGLLQASDISVLFSNTECIIQDKR--LLTMIGKA-DCHHGL 158
           L LH +L++P+   NL+SV  L  A+ +SV F      ++D    +  + GK  D  +  
Sbjct: 388 LNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEW 447

Query: 159 NLLSESSAPKVSSPVCSVSSAVWHSRLGHLSPKRLN 185
            + S       +SP    + + WH+RLGH +P  LN
Sbjct: 448 PIASSQPVSLFASPSSKATHSSWHARLGHPAPSILN 480

BLAST of Lag0005636 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.5e-07
Identity = 48/156 (30.77%), Postives = 76/156 (48.72%), Query Frame = 0

Query: 39  ANRWIIDSGASHHICHNKSAFCNWHHIDPMS----VILPTTYKVLVEYVGNVII---SDS 98
           AN W++DSGA+HHI    S F N     P +    V++     + + + G+  +   S S
Sbjct: 307 ANNWLLDSGATHHI---TSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRS 366

Query: 99  LVLHVVLFIPDFGYNLVSVSGLLQASDISVLFSNTECIIQDKR--LLTMIGKA-DCHHGL 158
           L L+ VL++P+   NL+SV  L   + +SV F      ++D    +  + GK  D  +  
Sbjct: 367 LDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEW 426

Query: 159 NLLSESSAPKVSSPVCSVSSAVWHSRLGHLSPKRLN 185
            + S  +    +SP    + + WHSRLGH S   LN
Sbjct: 427 PIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILN 459

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0065480.11.0e-3546.03Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >T... [more]
XP_012857659.17.2e-2642.13PREDICTED: uncharacterized protein LOC105976934 [Erythranthe guttata][more]
XP_019420691.12.0e-2337.36PREDICTED: uncharacterized protein LOC109330875 [Lupinus angustifolius][more]
KZV37633.16.3e-2238.12hypothetical protein F511_38248 [Dorcoceras hygrometricum][more]
KZV36180.11.4e-2137.63hypothetical protein F511_26362, partial [Dorcoceras hygrometricum][more]
Match NameE-valueIdentityDescription
Q94HW21.6e-0729.49Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT943.5e-0730.77Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005636.1Lag0005636.1mRNA