Lag0005614 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005614
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H
Locationchr6: 23821045 .. 23821587 (+)
RNA-Seq ExpressionLag0005614
SyntenyLag0005614
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTTCCACGGTGTCCCAGATGCAATCAAGTGCCGCGCATTCTTTTTCACTCTGACAGGATCAACCAGGCACTGGTTTGAGAGGCTGAAAAGGAGATCCATCAGCTGTTTCAAGGAGTTGGCCCAAGCATTCCTTGCACAGTTCATGGGAGCCAGAGAATAGCGCAAGCCTCACATCAACCTCTTGACAGTCAAACAGCAGCCAGGTGAGAGCTTGCGTGATTACATAACGCGTTTTAATGACGAAGCACTACAGGCTGAGGGGTACAGGGCTAGCAGCCCTATAGCCATAACAGCCGGACTAGAAGACGAAAGACTGCTCAATTCAATAGGTAAGAGCCAACCTCGAACCTATGCGGCGTTTGTATCCCGGGCACAGAAGTATATGAGCAGAGAGGAGTTACTGAAATCAACGAGGTCAGAACGAGAGTACAAGAGGTTTTCTTCATCTAACTACGACAGTAAAAAGGACAAAAGGCAGCGGACTGATGAGGGAGGCCGAGGCCGACCAAACCAAGGAGACTACTTGAAGAAGTTTTAA

mRNA sequence

ATGGACTTCCACGGTGTCCCAGATGCAATCAAGTGCCGCGCATTCTTTTTCACTCTGACAGGATCAACCAGGCACTGGTTTGAGAGGCTGAAAAGGAGATCCATCAGCTTCAAACAGCAGCCAGGTGAGAGCTTGCGTGATTACATAACGCGTTTTAATGACGAAGCACTACAGGCTGAGGGGTACAGGGCTAGCAGCCCTATAGCCATAACAGCCGGACTAGAAGACGAAAGACTGCTCAATTCAATAGGTAAGAGCCAACCTCGAACCTATGCGGCGTTTGTATCCCGGGCACAGAAGTATATGAGCAGAGAGGAGTTACTGAAATCAACGAGGTCAGAACGAGAGTACAAGAGGTTTTCTTCATCTAACTACGACAGTAAAAAGGACAAAAGGCAGCGGACTGATGAGGGAGGCCGAGGCCGACCAAACCAAGGAGACTACTTGAAGAAGTTTTAA

Coding sequence (CDS)

ATGGACTTCCACGGTGTCCCAGATGCAATCAAGTGCCGCGCATTCTTTTTCACTCTGACAGGATCAACCAGGCACTGGTTTGAGAGGCTGAAAAGGAGATCCATCAGCTTCAAACAGCAGCCAGGTGAGAGCTTGCGTGATTACATAACGCGTTTTAATGACGAAGCACTACAGGCTGAGGGGTACAGGGCTAGCAGCCCTATAGCCATAACAGCCGGACTAGAAGACGAAAGACTGCTCAATTCAATAGGTAAGAGCCAACCTCGAACCTATGCGGCGTTTGTATCCCGGGCACAGAAGTATATGAGCAGAGAGGAGTTACTGAAATCAACGAGGTCAGAACGAGAGTACAAGAGGTTTTCTTCATCTAACTACGACAGTAAAAAGGACAAAAGGCAGCGGACTGATGAGGGAGGCCGAGGCCGACCAAACCAAGGAGACTACTTGAAGAAGTTTTAA

Protein sequence

MDFHGVPDAIKCRAFFFTLTGSTRHWFERLKRRSISFKQQPGESLRDYITRFNDEALQAEGYRASSPIAITAGLEDERLLNSIGKSQPRTYAAFVSRAQKYMSREELLKSTRSEREYKRFSSSNYDSKKDKRQRTDEGGRGRPNQGDYLKKF
Homology
BLAST of Lag0005614 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-18
Identity = 73/185 (39.46%), Postives = 100/185 (54.05%), Query Frame = 0

Query: 2   DFHGVPDAIKCRAFFFTLTGSTRHWFERLKRRSIS------------------------- 61
           D + + +AI+CR F FTLTGS R+WF +LKR SIS                         
Sbjct: 35  DIYDIREAIRCRVFSFTLTGSARNWFRQLKRNSISSFKELAEAFVTQFVGGRVKSKPVTY 94

Query: 62  ---FKQQPGESLRDYITRFNDEALQAEGYR-ASSPIAITAGLEDERLLNSIGKSQPRTYA 121
               KQ+  ESL++Y+ RFN+E LQ EG   A + IA  +G++DERL+ S GK  P T+ 
Sbjct: 95  LLTIKQKATESLKEYVARFNEEKLQVEGLTDAVALIAFVSGVKDERLVFSFGKRTPGTFM 154

Query: 122 AFVSRAQKYMSREELLKSTRS-EREYKRFSSSNYDSKKDKRQRT----DEGGRGRPNQGD 153
             +SRAQKYMS  EL+  +R  ERE   +S+   + + +KR R+     + G GR  Q D
Sbjct: 155 EALSRAQKYMSAGELIHLSRDLERERANYSTKR-ERRGEKRHRSSWERSDSGHGRLVQRD 214

BLAST of Lag0005614 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 4.2e-16
Identity = 71/181 (39.23%), Postives = 92/181 (50.83%), Query Frame = 0

Query: 1   MDFHGVPDAIKCRAFFFTLTGSTRHWFERLKRRSIS------------------------ 60
           MD +GV +A++CR F  TL GS R WF +LKR SIS                        
Sbjct: 218 MDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVA 277

Query: 61  ----FKQQPGESLRDYITRFNDEALQAEGYR-ASSPIAITAGLEDERLLNSIGKSQPRTY 120
                KQ+  ESLRDY+ RFN+E LQ EG   A S +A  +G+ DE L  S GK  P T+
Sbjct: 278 YLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNTF 337

Query: 121 AAFVSRAQKYMSREELLKSTRSEREYKRFSSSNYDSKKDKRQRTDEGGRGRPNQGDYLKK 153
           +  +SRAQ+YMS  E   S R E + KR +    +   DK Q +    R R +Q D  +K
Sbjct: 338 SEALSRAQRYMSAGEFFYSKR-EPDGKR-TDPKRERSGDKPQGSRWEKRDRSSQKDPPRK 396

BLAST of Lag0005614 vs. NCBI nr
Match: XP_022147761.1 (uncharacterized protein LOC111016619 [Momordica charantia])

HSP 1 Score: 95.1 bits (235), Expect = 5.5e-16
Identity = 67/184 (36.41%), Postives = 93/184 (50.54%), Query Frame = 0

Query: 2   DFHGVPDAIKCRAFFFTLTGSTRHWFERLKRRSIS------------------------- 61
           D +G+ +AI+CR F FTLTGSTR WF++LKR+SIS                         
Sbjct: 35  DIYGITEAIRCRVFSFTLTGSTRIWFQQLKRKSISSFKELARAFVTQFAGGWNRSRPVAY 94

Query: 62  ---FKQQPGESLRDYITRFNDEALQAEGYR-ASSPIAITAGLEDERLLNSIGKSQPRTYA 121
               KQ+  ESL+DY+ RFN E LQ EG   A   +   +G++DE+L+ S GK    T++
Sbjct: 95  LLTIKQKATESLKDYVARFNKEKLQVEGLTDAVVLLVFISGVKDEQLVFSFGKRTSGTFS 154

Query: 122 AFVSRAQKYMSREELLKSTRSER----EYKRFSSSNYDSKKDKRQRTDEGGRGRPNQGDY 153
              SRAQ YMS  EL+ S R  +    +Y        + +   R    + G+GR  Q D 
Sbjct: 155 EARSRAQTYMSVGELIHSKRDPKGKYADYNTKRKRPGEKRHGLRWERSDSGQGRLVQRDP 214

BLAST of Lag0005614 vs. NCBI nr
Match: XP_022150035.1 (uncharacterized protein LOC111018307 [Momordica charantia])

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-15
Identity = 67/162 (41.36%), Postives = 83/162 (51.23%), Query Frame = 0

Query: 1   MDFHGVPDAIKCRAFFFTLTGSTRHWFERLKRRSIS------------------------ 60
           MD +GV +A+KCR F  TL+GS R WF +LKR SIS                        
Sbjct: 38  MDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVA 97

Query: 61  ----FKQQPGESLRDYITRFNDEALQAEGY-RASSPIAITAGLEDERLLNSIGKSQPRTY 120
                KQ+  ESL DY+ RFN+E LQ EG   A S +A  + + DE L  S GK  P T+
Sbjct: 98  YLLTIKQRATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTF 157

Query: 121 AAFVSRAQKYMSREELLKSTRSEREYKRFSSSNYDSKKDKRQ 134
           +  +SRAQKYMS  E   S R E E K+ S  N +   DK Q
Sbjct: 158 SEALSRAQKYMSAGEFFFSKR-EPEGKQ-SDQNRERSGDKPQ 197

BLAST of Lag0005614 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 2.7e-15
Identity = 71/181 (39.23%), Postives = 90/181 (49.72%), Query Frame = 0

Query: 1   MDFHGVPDAIKCRAFFFTLTGSTRHWFERLKRRSIS------------------------ 60
           MD +GV DAI+CR F  TL GS R WF +LKR SIS                        
Sbjct: 123 MDIYGVSDAIRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGRCRSRPVA 182

Query: 61  ----FKQQPGESLRDYITRFNDEALQAEGYR-ASSPIAITAGLEDERLLNSIGKSQPRTY 120
                KQ+  ESL DY+ RFN+E LQ EG   A S +A  +G+ DE L  S  K  P T+
Sbjct: 183 YLLTIKQRTAESLHDYVARFNEEKLQLEGLTDAVSLLAFMSGVRDEHLSFSFEKRTPSTF 242

Query: 121 AAFVSRAQKYMSREELLKSTRSEREYKRFSSSNYDSKKDKRQRTDEGGRGRPNQGDYLKK 153
           +  +SRAQ+YMS  E   S R E + KR +    +   DK Q +    R R +Q D  +K
Sbjct: 243 SEALSRAQRYMSASEFCYSKR-EPDGKR-TDQKRERSGDKPQGSRWEKRDRGSQKDPPRK 301

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158344.11.5e-1839.46uncharacterized protein LOC111024851 [Momordica charantia][more]
XP_022158830.14.2e-1639.23uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_022147761.15.5e-1636.41uncharacterized protein LOC111016619 [Momordica charantia][more]
XP_022150035.12.1e-1541.36uncharacterized protein LOC111018307 [Momordica charantia][more]
XP_022159109.12.7e-1539.23uncharacterized protein LOC111025548 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005614.1Lag0005614.1mRNA