Lag0005529 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005529
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RT_RNaseH_2 domain-containing protein
Location	chr6: 20759780 .. 20760928 (-)
RNA-Seq Expression	Lag0005529
Synteny	Lag0005529

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAACGAGAGGAAATACAGAGGAGGTTAAAGAAAAACAGACTGAGGATGTGCATGAAGAACATGCAGAGGTTGCGCTTGAAGGAGGTAATGAGCAAGAGCAGGAGGCTCGAGTAGAGGTGATCATGCCAGAAGTACCCAAACGTCGTCGCATTAAGCGAAAAGCGGGCCGCATCAAGGTAATCCACACTGATACTCCCTCGCCTCTAACCACTGATTCTAAAAGAGAAAATACAGAGAGAGAGGAGCAAGAGAAAAAGAGGCCGAGGAAAAAGCACGAGAGGAGTAGAGAAAAAGACAGAAGAAGAAAGGTTGCTCAAGCCAAGAGCAGACAGGGGCAACAGTGTTGTTGCAGCATCGGAGGAACCTGACGAACCAGAACAGCCACAGTTGTCGTATGTTCGCTTCGTCAACAATCTTGCCAGAGCAAAATATGCTGAGTCGCTGAAAAGAGATTTCTTGTTTGAAAGAGGATTTAGTGGTGATCTTCCGCATTTTTGAGGGTCGGCATTACGAACCACGGTTGGGAATCATTCTGTTCAAACCCTGAATCTGTGAACGCGCAGGTACTGACGAGGATGAAGGTTTCCATGTTATCGTTCGAGGTGTCGAGGTCGATTGGAGTCCTAGTGCTATTAACGCCCTGTACAACCTTCAATGAGCAGTTGAGTGATGGTTGTGGCGCCATCTAATGAGCAGTTGAGTGATGTTGTGAGAGAAGTTGGTATTGAAGGGGCGCAGTGGAGGCTTTCAAAAACAGAGAAAAGGACGTTTTAGTCAGCCTATCTGAAGAGGGAAGCAAATACATGGATGGATTTATCAAACAGAGATTGCTTCCAACGACTCACGTCTCGACGGTTTCTAGGGAACAGGTTCTGTTGGCTTTCACGATTTTAAGGTCTCTCAGTATTGATGTGGGCAAGATTATTGCGAGTGAAATATATGGTTGCTGGAAGAAGAAAGTGGGGAAATTGTTTTTCCCGAATACAATCACAATGCTTTGCAAGCAAGCAGGGGTTCCGGAGAATGAAGGAGATGTCATATTATTTGACAAGGGATCATTGGTACGCCTAACTTGGCGCTGCTTCAGCGTATGCAAGAGGCACGCCAGGGTGGGCTTCTTTATGGCATTCACAAGATTATAG

mRNA sequence

ATGGGAAGAACGAGAGGAAATACAGAGGAGGTTAAAGAAAAACAGACTGAGGATGTGCATGAAGAACATGCAGAGGTTGCGCTTGAAGGAGGTAATGAGCAAGAGCAGGAGGCTCGAGTAGAGGTGATCATGCCAGAAGTACCCAAACGTCGTCGCATTAAGCGAAAAGCGGGCCGCATCAAGAGAGAGAGGAGCAAGAGAAAAAGAGGCCGAGGAAAAAGCACGAGAGGAGTAGAGAAAAAGACAGAAGAAGAAAGGTTGCTCAAGCCAAGAGCAGACAGGGGCAACAGTGTTGTTGCAGCATCGGAGGAACCTGACGAACCAGAACAGCCACAGTTGTCGTATGTTCGCTTCGTCAACAATCTTGCCAGAGCAAAATATGCTGAGTCGCTGAAAAGAGATTTCTTGTTTGAAAGAGGATTTAGTGGTACTGACGAGGATGAAGGTTTCCATGTTATCGTTCGAGGTGTCGAGGTCGATTGGAGTCCTAGTGCTATTAACGCCCTGGGCGCAGTGGAGGCTTTCAAAAACAGAGAAAAGGACGTTTTAGTCAGCCTATCTGAAGAGGGAAGCAAATACATGGATGGATTTATCAAACAGAGATTGCTTCCAACGACTCACGTCTCGACGGTTTCTAGGGAACAGGTTCTGTTGGCTTTCACGATTTTAAGGTCTCTCAGTATTGATGTGGGCAAGATTATTGCGAGTGAAATATATGGTTGCTGGAAGAAGAAAGTGGGGAAATTGTTTTTCCCGAATACAATCACAATGCTTTGCAAGCAAGCAGGGGTTCCGGAGAATGAAGGAGATGTCATATTATTTGACAAGGGATCATTGGTACGCCTAACTTGGCGCTGCTTCAGCGTATGCAAGAGGCACGCCAGGGTGGGCTTCTTTATGGCATTCACAAGATTATAG

Coding sequence (CDS)

ATGGGAAGAACGAGAGGAAATACAGAGGAGGTTAAAGAAAAACAGACTGAGGATGTGCATGAAGAACATGCAGAGGTTGCGCTTGAAGGAGGTAATGAGCAAGAGCAGGAGGCTCGAGTAGAGGTGATCATGCCAGAAGTACCCAAACGTCGTCGCATTAAGCGAAAAGCGGGCCGCATCAAGAGAGAGAGGAGCAAGAGAAAAAGAGGCCGAGGAAAAAGCACGAGAGGAGTAGAGAAAAAGACAGAAGAAGAAAGGTTGCTCAAGCCAAGAGCAGACAGGGGCAACAGTGTTGTTGCAGCATCGGAGGAACCTGACGAACCAGAACAGCCACAGTTGTCGTATGTTCGCTTCGTCAACAATCTTGCCAGAGCAAAATATGCTGAGTCGCTGAAAAGAGATTTCTTGTTTGAAAGAGGATTTAGTGGTACTGACGAGGATGAAGGTTTCCATGTTATCGTTCGAGGTGTCGAGGTCGATTGGAGTCCTAGTGCTATTAACGCCCTGGGCGCAGTGGAGGCTTTCAAAAACAGAGAAAAGGACGTTTTAGTCAGCCTATCTGAAGAGGGAAGCAAATACATGGATGGATTTATCAAACAGAGATTGCTTCCAACGACTCACGTCTCGACGGTTTCTAGGGAACAGGTTCTGTTGGCTTTCACGATTTTAAGGTCTCTCAGTATTGATGTGGGCAAGATTATTGCGAGTGAAATATATGGTTGCTGGAAGAAGAAAGTGGGGAAATTGTTTTTCCCGAATACAATCACAATGCTTTGCAAGCAAGCAGGGGTTCCGGAGAATGAAGGAGATGTCATATTATTTGACAAGGGATCATTGGTACGCCTAACTTGGCGCTGCTTCAGCGTATGCAAGAGGCACGCCAGGGTGGGCTTCTTTATGGCATTCACAAGATTATAG

Protein sequence

MGRTRGNTEEVKEKQTEDVHEEHAEVALEGGNEQEQEARVEVIMPEVPKRRRIKRKAGRIKRERSKRKRGRGKSTRGVEKKTEEERLLKPRADRGNSVVAASEEPDEPEQPQLSYVRFVNNLARAKYAESLKRDFLFERGFSGTDEDEGFHVIVRGVEVDWSPSAINALGAVEAFKNREKDVLVSLSEEGSKYMDGFIKQRLLPTTHVSTVSREQVLLAFTILRSLSIDVGKIIASEIYGCWKKKVGKLFFPNTITMLCKQAGVPENEGDVILFDKGSLVRLTWRCFSVCKRHARVGFFMAFTRL

Homology

[Close]

BLAST of Lag0005529 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 84.3 bits (207), Expect = 1.9e-12
Identity = 56/155 (36.13%), Postives = 79/155 (50.97%), Query Frame = 0


Query: 144 TDEDEGFHVIVRGVEVDWSPSAINALGAV--------EAFKNREKDVLVSLSE------- 203
           TD +E   V VRGV+V WS  AINA+  +        E  +N  +  L+++ E       
Sbjct: 95  TDPEEN-TVYVRGVQVSWSEEAINAVFGLGDPVDEHSEFIQNITQQDLITVLETVAAAGA 154

Query: 204 ------------------EGSKYMDGFIKQRLLPTTHVSTVSREQVLLAFTILRSLSIDV 263
                               +K    F+K RLLPTTH  TVS++++LL  ++L   SI+V
Sbjct: 155 EWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLIGKSINV 214

Query: 264 GKIIASEIYGCWKKKVGKLFFPNTITMLCKQAGVP 266
           G++I SEI  C  +K G LFFP+ IT LC+ A  P
Sbjct: 215 GRMIHSEIRACAARKTGALFFPSLITRLCRNARAP 248

[Close]

BLAST of Lag0005529 vs. NCBI nr
Match: PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])

HSP 1 Score: 82.4 bits (202), Expect = 7.3e-12
Identity = 55/158 (34.81%), Postives = 79/158 (50.00%), Query Frame = 0


Query: 144 TDEDEGFHVIVRGVEVDWSPSAINALGAV--------EAFKNREKDVLVSLSE------- 203
           TD +E   + VRGV+V WS  AINA+  +        E  +N  +  L+++ E       
Sbjct: 25  TDPEEN-TIYVRGVQVSWSEEAINAVFGLGDPVDEHSEFIENITEPELITVLETVAAAGA 84

Query: 204 ------------------EGSKYMDGFIKQRLLPTTHVSTVSREQVLLAFTILRSLSIDV 263
                               +K    F+K RLLPTTH   VS++++LL  ++L   SI+V
Sbjct: 85  EWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKIVSKDRMLLLHSMLNGKSINV 144

Query: 264 GKIIASEIYGCWKKKVGKLFFPNTITMLCKQAGVPENE 269
           G++I SEI  C  +K G LFFP+ IT LC+ A    NE
Sbjct: 145 GRMIHSEIRACAAQKTGALFFPSLITRLCRNAPFLVNE 181

[Close]

BLAST of Lag0005529 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 80.9 bits (198), Expect = 2.1e-11
Identity = 52/147 (35.37%), Postives = 74/147 (50.34%), Query Frame = 0


Query: 152 VIVRGVEVDWSPSAINALGAV--------EAFKNREKDVLVSLSE--------------- 211
           V VRGV+V WS  AINA+  +        E  +N  +  L+++ E               
Sbjct: 93  VYVRGVQVSWSEEAINAVFGLGDPVDEHSEFIENITEHDLITVLETVAVAGAEWNVSAQG 152

Query: 212 ----------EGSKYMDGFIKQRLLPTTHVSTVSREQVLLAFTILRSLSIDVGKIIASEI 266
                       +K    F+K  LLPTTH  TVS++++LL  ++L   SI+VG++I SEI
Sbjct: 153 AYTCIRSALTPAAKVWFHFLKSHLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEI 212

[Close]

BLAST of Lag0005529 vs. NCBI nr
Match: KAE8676815.1 (hypothetical protein F3Y22_tig00111582pilonHSYRG01273 [Hibiscus syriacus])

HSP 1 Score: 79.0 bits (193), Expect = 8.1e-11
Identity = 39/91 (42.86%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 191  SKYMDGFIKQRLLPTTHVSTVSREQVLLAFTILRSLSIDVGKIIASEIYGCWKKKVGKLF 250
            +K  + F+K +L+PT+H +TVS  ++LL  +I+ S  IDVG+II  +++ C  KK   L 
Sbjct: 1004 AKLWNHFLKHKLMPTSHNTTVSLSRLLLLHSIMVSHPIDVGRIIVQQVHDCLSKKASALV 1063

Query: 251  FPNTITMLCKQAGVPENEGDVILFDKGSLVR 282
            FPN IT LC++  V EN  D IL    S+ R
Sbjct: 1064 FPNLITTLCRKKKVEENAFDEILPGLSSITR 1094

[Close]

BLAST of Lag0005529 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-10
Identity = 40/93 (43.01%), Postives = 57/93 (61.29%), Query Frame = 0


Query: 173 EAFKNREKDVLVSLSEEGSKYMDGFIKQRLLPTTHVSTVSREQVLLAFTILRSLSIDVGK 232
           E  +NR  +         +K    F+K RLLPTTH  TVS++++LL +++L   SI+VG+
Sbjct: 27  ENIQNRPLNAEKGALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLYSMLTGKSINVGR 86

Query: 233 IIASEIYGCWKKKVGKLFFPNTITMLCKQAGVP 266
           +I SEI  C  +K G LFFP+ IT LC+ A  P
Sbjct: 87  MIHSEIRACAARKSGALFFPSLITQLCRNARAP 119

[Close]

BLAST of Lag0005529 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.3e-13
Identity = 56/155 (36.13%), Postives = 79/155 (50.97%), Query Frame = 0


Query: 144 TDEDEGFHVIVRGVEVDWSPSAINALGAV--------EAFKNREKDVLVSLSE------- 203
           TD +E   V VRGV+V WS  AINA+  +        E  +N  +  L+++ E       
Sbjct: 95  TDPEEN-TVYVRGVQVSWSEEAINAVFGLGDPVDEHSEFIQNITQQDLITVLETVAAAGA 154

Query: 204 ------------------EGSKYMDGFIKQRLLPTTHVSTVSREQVLLAFTILRSLSIDV 263
                               +K    F+K RLLPTTH  TVS++++LL  ++L   SI+V
Sbjct: 155 EWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLIGKSINV 214

Query: 264 GKIIASEIYGCWKKKVGKLFFPNTITMLCKQAGVP 266
           G++I SEI  C  +K G LFFP+ IT LC+ A  P
Sbjct: 215 GRMIHSEIRACAARKTGALFFPSLITRLCRNARAP 248

[Close]

BLAST of Lag0005529 vs. ExPASy TrEMBL
Match: A0A2P5DXM3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.6e-12
Identity = 55/158 (34.81%), Postives = 79/158 (50.00%), Query Frame = 0


Query: 144 TDEDEGFHVIVRGVEVDWSPSAINALGAV--------EAFKNREKDVLVSLSE------- 203
           TD +E   + VRGV+V WS  AINA+  +        E  +N  +  L+++ E       
Sbjct: 25  TDPEEN-TIYVRGVQVSWSEEAINAVFGLGDPVDEHSEFIENITEPELITVLETVAAAGA 84

Query: 204 ------------------EGSKYMDGFIKQRLLPTTHVSTVSREQVLLAFTILRSLSIDV 263
                               +K    F+K RLLPTTH   VS++++LL  ++L   SI+V
Sbjct: 85  EWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKIVSKDRMLLLHSMLNGKSINV 144

Query: 264 GKIIASEIYGCWKKKVGKLFFPNTITMLCKQAGVPENE 269
           G++I SEI  C  +K G LFFP+ IT LC+ A    NE
Sbjct: 145 GRMIHSEIRACAAQKTGALFFPSLITRLCRNAPFLVNE 181

[Close]

BLAST of Lag0005529 vs. ExPASy TrEMBL
Match: A0A2P5AGA5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335450 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-11
Identity = 52/147 (35.37%), Postives = 74/147 (50.34%), Query Frame = 0


Query: 152 VIVRGVEVDWSPSAINALGAV--------EAFKNREKDVLVSLSE--------------- 211
           V VRGV+V WS  AINA+  +        E  +N  +  L+++ E               
Sbjct: 93  VYVRGVQVSWSEEAINAVFGLGDPVDEHSEFIENITEHDLITVLETVAVAGAEWNVSAQG 152

Query: 212 ----------EGSKYMDGFIKQRLLPTTHVSTVSREQVLLAFTILRSLSIDVGKIIASEI 266
                       +K    F+K  LLPTTH  TVS++++LL  ++L   SI+VG++I SEI
Sbjct: 153 AYTCIRSALTPAAKVWFHFLKSHLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEI 212

[Close]

BLAST of Lag0005529 vs. ExPASy TrEMBL
Match: A0A6A2Y697 (Reverse transcriptase domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111582pilonHSYRG01273 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-11
Identity = 39/91 (42.86%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 191  SKYMDGFIKQRLLPTTHVSTVSREQVLLAFTILRSLSIDVGKIIASEIYGCWKKKVGKLF 250
            +K  + F+K +L+PT+H +TVS  ++LL  +I+ S  IDVG+II  +++ C  KK   L 
Sbjct: 1004 AKLWNHFLKHKLMPTSHNTTVSLSRLLLLHSIMVSHPIDVGRIIVQQVHDCLSKKASALV 1063

Query: 251  FPNTITMLCKQAGVPENEGDVILFDKGSLVR 282
            FPN IT LC++  V EN  D IL    S+ R
Sbjct: 1064 FPNLITTLCRKKKVEENAFDEILPGLSSITR 1094

[Close]

BLAST of Lag0005529 vs. ExPASy TrEMBL
Match: A0A2P5CEY2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.7e-11
Identity = 40/93 (43.01%), Postives = 57/93 (61.29%), Query Frame = 0


Query: 173 EAFKNREKDVLVSLSEEGSKYMDGFIKQRLLPTTHVSTVSREQVLLAFTILRSLSIDVGK 232
           E  +NR  +         +K    F+K RLLPTTH  TVS++++LL +++L   SI+VG+
Sbjct: 27  ENIQNRPLNAEKGALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLYSMLTGKSINVGR 86

Query: 233 IIASEIYGCWKKKVGKLFFPNTITMLCKQAGVP 266
           +I SEI  C  +K G LFFP+ IT LC+ A  P
Sbjct: 87  MIHSEIRACAARKSGALFFPSLITQLCRNARAP 119

The following BLAST results are available for this feature:

BLAST of Lag0005529 vs. NCBI nr


Match Name	E-value	Identity	Description
PON46472.1	1.9e-12	36.13	hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]	[more]
PON78020.1	7.3e-12	34.81	hypothetical protein PanWU01x14_023740 [Parasponia andersonii]	[more]
PON35554.1	2.1e-11	35.37	hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]	[more]
KAE8676815.1	8.1e-11	42.86	hypothetical protein F3Y22_tig00111582pilonHSYRG01273 [Hibiscus syriacus]	[more]
PON59596.1	1.4e-10	43.01	hypothetical protein PanWU01x14_158080 [Parasponia andersonii]	[more]

BLAST of Lag0005529 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0005529 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5BCG4	9.3e-13	36.13	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5DXM3	3.6e-12	34.81	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE...	[more]
A0A2P5AGA5	1.0e-11	35.37	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A6A2Y697	3.9e-11	42.86	Reverse transcriptase domain-containing protein OS=Hibiscus syriacus OX=106335 G...	[more]
A0A2P5CEY2	6.7e-11	43.01	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE...	[more]

BLAST of Lag0005529 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005529.1	Lag0005529.1	mRNA