Lag0005527 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005527
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase
Locationchr6: 20652035 .. 20652505 (+)
RNA-Seq ExpressionLag0005527
SyntenyLag0005527
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTTCAAATAGGACAGATCGCTTCAGCGGTGAATGCCCTTCAGAAGGGAAAATTTCAAAGCGACACTGAACCTAACCCAAGAGAGCAGTGCAAGATGGTGACACTAAGAAGTGGTAGGAAGCTGGAGATCAGTTCAGAACAAAAGAAGAAAGAAGAGAAGAGAAAGGATGAAGATGAAAGGGCTGAGGCACAAAAAGCCTCCTTTGAAAGGTCCCAACATCCTCCTAACTCTATTGATTTTAGTTGTGGATTTTCTAACAATTTTGCAGGAAGAAAAGAAGATGAAAAGAAAAATGGCAGGCATGAAGAGAAACTGAATGAGGAAGAAGTGGTTCCATGCAACCATCATGACAGAGGCTCGCACGTCAGCCCGTCCAAGCGGAGGGGCGAATGTCCAACCTTTGACTATAGGGAGTTACCTTTTCCTCAACGCTTTAAAAATGTTAAATTAGATGAGCAGTTTTAG

mRNA sequence

ATGGAAGTTCAAATAGGACAGATCGCTTCAGCGGTGAATGCCCTTCAGAAGGGAAAATTTCAAAGCGACACTGAACCTAACCCAAGAGAGCAGTGCAAGATGGTGACACTAAGAAGTGGTAGGAAGCTGGAGATCAGTTCAGAACAAAAGAAGAAAGAAGAGAAGAGAAAGGATGAAGATGAAAGGGCTGAGGCACAAAAAGCCTCCTTTGAAAGGTCCCAACATCCTCCTAACTCTATTGATTTTAGTTGTGGATTTTCTAACAATTTTGCAGGAAGAAAAGAAGATGAAAAGAAAAATGGCAGGCATGAAGAGAAACTGAATGAGGAAGAAGTGGTTCCATGCAACCATCATGACAGAGGCTCGCACGTCAGCCCGTCCAAGCGGAGGGGCGAATGTCCAACCTTTGACTATAGGGAGTTACCTTTTCCTCAACGCTTTAAAAATGTTAAATTAGATGAGCAGTTTTAG

Coding sequence (CDS)

ATGGAAGTTCAAATAGGACAGATCGCTTCAGCGGTGAATGCCCTTCAGAAGGGAAAATTTCAAAGCGACACTGAACCTAACCCAAGAGAGCAGTGCAAGATGGTGACACTAAGAAGTGGTAGGAAGCTGGAGATCAGTTCAGAACAAAAGAAGAAAGAAGAGAAGAGAAAGGATGAAGATGAAAGGGCTGAGGCACAAAAAGCCTCCTTTGAAAGGTCCCAACATCCTCCTAACTCTATTGATTTTAGTTGTGGATTTTCTAACAATTTTGCAGGAAGAAAAGAAGATGAAAAGAAAAATGGCAGGCATGAAGAGAAACTGAATGAGGAAGAAGTGGTTCCATGCAACCATCATGACAGAGGCTCGCACGTCAGCCCGTCCAAGCGGAGGGGCGAATGTCCAACCTTTGACTATAGGGAGTTACCTTTTCCTCAACGCTTTAAAAATGTTAAATTAGATGAGCAGTTTTAG

Protein sequence

MEVQIGQIASAVNALQKGKFQSDTEPNPREQCKMVTLRSGRKLEISSEQKKKEEKRKDEDERAEAQKASFERSQHPPNSIDFSCGFSNNFAGRKEDEKKNGRHEEKLNEEEVVPCNHHDRGSHVSPSKRRGECPTFDYRELPFPQRFKNVKLDEQF
Homology
BLAST of Lag0005527 vs. NCBI nr
Match: XP_023874613.1 (uncharacterized protein LOC111987139 [Quercus suber])

HSP 1 Score: 72.4 bits (176), Expect = 3.9e-09
Identity = 54/156 (34.62%), Postives = 77/156 (49.36%), Query Frame = 0

Query: 1   MEVQIGQIASAVNALQKGKFQSDTEPNPREQCKMVTLRSGRKLEISSEQKKKEEKRKDED 60
           +EVQIGQ+A+ +NA Q+G F S+TE NP+EQCK +TLRSGR++E S  ++          
Sbjct: 377 LEVQIGQLATTINAQQRGTFPSNTEVNPKEQCKAITLRSGREIERSPSKET--------- 436

Query: 61  ERAEAQKASFERSQHPPNSIDFSCGFSNNFAGRKEDEKKNGRHEEKLNEEEVVPCNHHDR 120
                     E +   PN                     NG+ + K+ EEE+V      R
Sbjct: 437 ----------ETTPTAPN---------------------NGQSKNKVEEEEIV--EDTLR 490

Query: 121 GSHVSPSKRRGECPTFDYRELPFPQRFKNVKLDEQF 157
            + + PS    + P      LP+PQRF+  KLD+QF
Sbjct: 497 ETDMPPSISFPDNPPILSTPLPYPQRFQKQKLDKQF 490

BLAST of Lag0005527 vs. NCBI nr
Match: KAG7947748.1 (hypothetical protein I3843_14G109500 [Carya illinoinensis])

HSP 1 Score: 71.6 bits (174), Expect = 6.6e-09
Identity = 50/156 (32.05%), Postives = 79/156 (50.64%), Query Frame = 0

Query: 1   MEVQIGQIASAVNALQKGKFQSDTEPNPREQCKMVTLRSGRKLEISSEQKKKEEKRKDED 60
           +EVQIGQ+A+ +NA Q+G F S+TE NP+EQCK +TLRSG+++E                
Sbjct: 379 LEVQIGQLATTINAQQRGAFPSNTEVNPKEQCKAITLRSGKEIE---------------- 438

Query: 61  ERAEAQKASFERSQHPPNSIDFSCGFSNNFAGRKEDEKKNGRHEEKLNEEEVVPCNHHDR 120
                 +A  + S+  P + +                  NG+ ++++ EEE+V  N    
Sbjct: 439 ------RAPLKESKSTPTAAN------------------NGQSKDQVEEEEIV--NDTLE 492

Query: 121 GSHVSPSKRRGECPTFDYRELPFPQRFKNVKLDEQF 157
            + + P+    + P      LP+PQRF+  KLD+QF
Sbjct: 499 ETDLPPTISFPDNPPILAPPLPYPQRFQKQKLDKQF 492

BLAST of Lag0005527 vs. NCBI nr
Match: KAG6734747.1 (hypothetical protein I3842_01G285500 [Carya illinoinensis])

HSP 1 Score: 71.6 bits (174), Expect = 6.6e-09
Identity = 50/156 (32.05%), Postives = 79/156 (50.64%), Query Frame = 0

Query: 1   MEVQIGQIASAVNALQKGKFQSDTEPNPREQCKMVTLRSGRKLEISSEQKKKEEKRKDED 60
           +EVQIGQ+A+ +NA Q+G F S+TE NP+EQCK +TLRSG+++E                
Sbjct: 379 LEVQIGQLATTINAQQRGAFPSNTEVNPKEQCKAITLRSGKEIE---------------- 438

Query: 61  ERAEAQKASFERSQHPPNSIDFSCGFSNNFAGRKEDEKKNGRHEEKLNEEEVVPCNHHDR 120
                 +A  + S+  P + +                  NG+ ++++ EEE+V  N    
Sbjct: 439 ------RAPLKESKSTPTAAN------------------NGQSKDQVEEEEIV--NDTLE 492

Query: 121 GSHVSPSKRRGECPTFDYRELPFPQRFKNVKLDEQF 157
            + + P+    + P      LP+PQRF+  KLD+QF
Sbjct: 499 ETDLPPTISFPDNPPILAPPLPYPQRFQKQKLDKQF 492

BLAST of Lag0005527 vs. NCBI nr
Match: KAG7990634.1 (hypothetical protein I3843_02G035100 [Carya illinoinensis])

HSP 1 Score: 69.3 bits (168), Expect = 3.3e-08
Identity = 48/156 (30.77%), Postives = 78/156 (50.00%), Query Frame = 0

Query: 1   MEVQIGQIASAVNALQKGKFQSDTEPNPREQCKMVTLRSGRKLEISSEQKKKEEKRKDED 60
           +EVQIGQ+A+ +NA Q+G F S+TE NP+EQCK +TLRSG+++E                
Sbjct: 409 IEVQIGQLATTINAQQRGAFPSNTEVNPKEQCKAITLRSGKEIE---------------- 468

Query: 61  ERAEAQKASFERSQHPPNSIDFSCGFSNNFAGRKEDEKKNGRHEEKLNEEEVVPCNHHDR 120
                 ++  + S+  P +++                   G+ + K+ E+E+V  N    
Sbjct: 469 ------RSPLKESKSTPTAVNI------------------GQSKNKVEEDEIV--NDTLE 522

Query: 121 GSHVSPSKRRGECPTFDYRELPFPQRFKNVKLDEQF 157
            +  +P+    + P      LP+PQRF+  KLD+QF
Sbjct: 529 ETDFAPTISFPDNPPILAPPLPYPQRFQKQKLDKQF 522

BLAST of Lag0005527 vs. NCBI nr
Match: XP_022159119.1 (uncharacterized protein LOC111025551 [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-07
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 0

Query: 1   MEVQIGQIASAVNALQKGKFQSDTEPNPREQCKMVTLRSGRKLE------------ISSE 60
           MEVQIGQ+AS +N +QKGKF SDTE NPRE CK VTLRSG++L+             + E
Sbjct: 15  MEVQIGQMASTLNIMQKGKFPSDTEVNPREHCKAVTLRSGKELQEPEKKKMEEPVITTEE 74

Query: 61  QKKKEEKRKDEDERAEAQKASFERSQHPPNSIDF 83
           ++ KEE  K+     +A K +   +   PNS+ +
Sbjct: 75  RENKEEVVKEATPTLQADKPTSSIASSLPNSLPY 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023874613.13.9e-0934.62uncharacterized protein LOC111987139 [Quercus suber][more]
KAG7947748.16.6e-0932.05hypothetical protein I3843_14G109500 [Carya illinoinensis][more]
KAG6734747.16.6e-0932.05hypothetical protein I3842_01G285500 [Carya illinoinensis][more]
KAG7990634.13.3e-0830.77hypothetical protein I3843_02G035100 [Carya illinoinensis][more]
XP_022159119.12.8e-0744.68uncharacterized protein LOC111025551 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 43..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..29

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005527.1Lag0005527.1mRNA