Lag0005495 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005495
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr6: 19602798 .. 19603508 (+)
RNA-Seq ExpressionLag0005495
SyntenyLag0005495
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAAAAGCTTGCGTCAACCTTCGAAGTCCCTCCTCTTTCTCGGTCACCATATCTGACTCGGCCAATCAAGGTTTACTCAGGATTTAAGATTTATCAAACTGTTTCTTCTTCCACTGTATTCTTCATTCTTGCTATAACCTTTATGATTGTAGCATTGTGCTATTATTTTTTATCCTCCCTATTTTTCAGACATAAGTACTATAAATAACAGTTTGTTGTTTTTATCTTCCATAATAATTTCATCAAGCTATTGTAGATGTTTTATTTATCGTGGAAACGCTACCCCTTTGTTGGTTGTACTACATATTGACAGGGTTTCGAGGTGGGGGGGAACAAGATTCCTCTATCTCACCTTCAGTTTGCTGATGACACGATTTTCTTTTGCTCTGGTAAGGAGGAGTCTTTTTCAGTCCTGAACCATATGCTTGCCTTTTTTGAGTCCATGTCGGGCCTTAAAATCAACAGGGATAAGTGTCAGCTTCTGGGTATCAATAGCGATGAGAGCAAAGTCAATAGATGGGCTTCGTTGGTTGGTTGCGAGGTAGGATCTTTCCCCTCTTCCTATTTAGGGCTCCCGTTGGGTCACAATCCGAGGAGTTCTTCTTTTTGGGAGCCAGTGGTGGGCAAGGTTAGGAAGAGACTTGCAAGTTGGAAAGAAGCTTCTTTTCCAAGGGTGGAAGGCTTACCCTTATCAAATCCGTCCTGA

mRNA sequence

ATGAAGAAAAAGCTTGCGTCAACCTTCGAAGTCCCTCCTCTTTCTCGGTCACCATATCTGACTCGGCCAATCAAGGGTTTCGAGGTGGGGGGGAACAAGATTCCTCTATCTCACCTTCAGTTTGCTGATGACACGATTTTCTTTTGCTCTGGTAAGGAGGAGTCTTTTTCAGTCCTGAACCATATGCTTGCCTTTTTTGAGTCCATGTCGGGCCTTAAAATCAACAGGGATAAGTGTCAGCTTCTGGGTATCAATAGCGATGAGAGCAAAGTCAATAGATGGGCTTCGTTGGTTGGTTGCGAGGTAGGATCTTTCCCCTCTTCCTATTTAGGGCTCCCGTTGGGTCACAATCCGAGGAGTTCTTCTTTTTGGGAGCCAGTGGTGGGCAAGGTTAGGAAGAGACTTGCAAGTTGGAAAGAAGCTTCTTTTCCAAGGGTGGAAGGCTTACCCTTATCAAATCCGTCCTGA

Coding sequence (CDS)

ATGAAGAAAAAGCTTGCGTCAACCTTCGAAGTCCCTCCTCTTTCTCGGTCACCATATCTGACTCGGCCAATCAAGGGTTTCGAGGTGGGGGGGAACAAGATTCCTCTATCTCACCTTCAGTTTGCTGATGACACGATTTTCTTTTGCTCTGGTAAGGAGGAGTCTTTTTCAGTCCTGAACCATATGCTTGCCTTTTTTGAGTCCATGTCGGGCCTTAAAATCAACAGGGATAAGTGTCAGCTTCTGGGTATCAATAGCGATGAGAGCAAAGTCAATAGATGGGCTTCGTTGGTTGGTTGCGAGGTAGGATCTTTCCCCTCTTCCTATTTAGGGCTCCCGTTGGGTCACAATCCGAGGAGTTCTTCTTTTTGGGAGCCAGTGGTGGGCAAGGTTAGGAAGAGACTTGCAAGTTGGAAAGAAGCTTCTTTTCCAAGGGTGGAAGGCTTACCCTTATCAAATCCGTCCTGA

Protein sequence

MKKKLASTFEVPPLSRSPYLTRPIKGFEVGGNKIPLSHLQFADDTIFFCSGKEESFSVLNHMLAFFESMSGLKINRDKCQLLGINSDESKVNRWASLVGCEVGSFPSSYLGLPLGHNPRSSSFWEPVVGKVRKRLASWKEASFPRVEGLPLSNPS
Homology
BLAST of Lag0005495 vs. NCBI nr
Match: KAA0066908.1 (mitochondrial phosphate carrier protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 143.3 bits (360), Expect = 1.8e-30
Identity = 69/127 (54.33%), Postives = 89/127 (70.08%), Query Frame = 0

Query: 27  FEVGGNKIPLSHLQFADDTIFFCSGKEESFSVLNHMLAFFESMSGLKINRDKCQ--LLGI 86
           F++G N++ LSHLQFADDT+ FC GKEESF +L H++AFFE  SGLKINR KC   + GI
Sbjct: 129 FKIGRNEVVLSHLQFADDTMLFCFGKEESFLILIHVVAFFEDYSGLKINRSKCTVFVFGI 188

Query: 87  NSDESKVNRWASLVGCEVGSFPSSYLGLPLGHNPRSSSFWEPVVGKVRKRLASWKEASFP 146
           NSD++K+ +W  +  CEVGSFPS YL L L  N ++ SFW+ V  K+ KR A WK+  F 
Sbjct: 189 NSDQAKLQKWVKVFDCEVGSFPSFYLRLLLRGNSKAVSFWDLVSEKICKRRAVWKKGFFS 248

Query: 147 RVEGLPL 152
           +   L L
Sbjct: 249 KAGRLTL 255

BLAST of Lag0005495 vs. NCBI nr
Match: XP_009335445.1 (PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri])

HSP 1 Score: 133.3 bits (334), Expect = 1.8e-27
Identity = 63/118 (53.39%), Postives = 83/118 (70.34%), Query Frame = 0

Query: 24  IKGFEVGGNKIPLSHLQFADDTIFFCSGKEESFSVLNHMLAFFESMSGLKINRDKCQLLG 83
           IKG  +G  ++ +SHLQFADDTIFF +  E+ ++ L  +L  F ++SGLKIN+ KC + G
Sbjct: 489 IKGLGIGQERVEISHLQFADDTIFFLAEDEDVWNNLLEVLNLFCTISGLKINKAKCSMAG 548

Query: 84  INSDESKVNRWASLVGCEVGSFPSSYLGLPLGHNPRSSSFWEPVVGKVRKRLASWKEA 142
           INSD  K+   A   GCEVGS+P  YLGLPLG  P++  FW+PVV K+ KRL SWK+A
Sbjct: 549 INSDCEKLKGMADSWGCEVGSWPIKYLGLPLGGRPKALMFWDPVVEKMEKRLQSWKKA 606

BLAST of Lag0005495 vs. NCBI nr
Match: PRQ36601.1 (putative RNA-directed DNA polymerase [Rosa chinensis])

HSP 1 Score: 131.7 bits (330), Expect = 5.4e-27
Identity = 60/124 (48.39%), Postives = 83/124 (66.94%), Query Frame = 0

Query: 22  RPIKGFEVGGNKIPLSHLQFADDTIFFCSGKEESFSVLNHMLAFFESMSGLKINRDKCQL 81
           R I+G  VG  ++ ++HLQFADDTIFF    + +++ LN +L  F   SGLKIN+ KC +
Sbjct: 422 RLIEGLVVGREEVEITHLQFADDTIFFLKDDDHNWNNLNMVLESFCLFSGLKINKSKCSV 481

Query: 82  LGINSDESKVNRWASLVGCEVGSFPSSYLGLPLGHNPRSSSFWEPVVGKVRKRLASWKEA 141
           +GIN++  ++ R A   GCE+G +P  YLGLPLG NP+ +SFW PVV K+ K L  WK+A
Sbjct: 482 VGINTEAGRLERMADDQGCEIGVWPMKYLGLPLGGNPKQASFWNPVVEKIEKSLEGWKKA 541

Query: 142 SFPR 146
              R
Sbjct: 542 FLSR 545

BLAST of Lag0005495 vs. NCBI nr
Match: CAN72221.1 (hypothetical protein VITISV_028928 [Vitis vinifera])

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-26
Identity = 57/118 (48.31%), Postives = 81/118 (68.64%), Query Frame = 0

Query: 24  IKGFEVGGNKIPLSHLQFADDTIFFCSGKEESFSVLNHMLAFFESMSGLKINRDKCQLLG 83
           ++GF+VG NK  +SHLQFADDTIFF + +EE    L  +L  F  +SGLK+N DK  + G
Sbjct: 59  LEGFKVGRNKTRVSHLQFADDTIFFSNTREEDLQTLKSLLLAFRHISGLKVNLDKSNIYG 118

Query: 84  INSDESKVNRWASLVGCEVGSFPSSYLGLPLGHNPRSSSFWEPVVGKVRKRLASWKEA 142
           IN D++ ++R A  + C+   +P  YLGLPLG NPR+  FW+PV+ ++ +RL  WK+A
Sbjct: 119 INLDQAHLSRLAETLECKASGWPILYLGLPLGGNPRAGGFWDPVIERISRRLDGWKKA 176

BLAST of Lag0005495 vs. NCBI nr
Match: XP_020420593.1 (uncharacterized protein LOC18774736 [Prunus persica])

HSP 1 Score: 130.2 bits (326), Expect = 1.6e-26
Identity = 61/116 (52.59%), Postives = 78/116 (67.24%), Query Frame = 0

Query: 26  GFEVGGNKIPLSHLQFADDTIFFCSGKEESFSVLNHMLAFFESMSGLKINRDKCQLLGIN 85
           G   G   + +SHLQFADDTIFF   K+E ++ L  +L  F  +SG++IN+ KC L+GIN
Sbjct: 512 GLSPGLGMVEVSHLQFADDTIFFIEDKDEYWNNLLQILELFCFVSGMEINKSKCSLVGIN 571

Query: 86  SDESKVNRWASLVGCEVGSFPSSYLGLPLGHNPRSSSFWEPVVGKVRKRLASWKEA 142
            D+  +N  A   GCEVG++P SYLGLPLG NPR+  FW+PVV KV  RL  WK A
Sbjct: 572 LDDGLLNELAGAWGCEVGAWPMSYLGLPLGGNPRAIKFWDPVVEKVENRLQKWKRA 627

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0066908.11.8e-3054.33mitochondrial phosphate carrier protein 3 [Cucumis melo var. makuwa][more]
XP_009335445.11.8e-2753.39PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri][more]
PRQ36601.15.4e-2748.39putative RNA-directed DNA polymerase [Rosa chinensis][more]
CAN72221.11.2e-2648.31hypothetical protein VITISV_028928 [Vitis vinifera][more]
XP_020420593.11.6e-2652.59uncharacterized protein LOC18774736 [Prunus persica][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 36..112
e-value: 2.4E-8
score: 33.8
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 34..145
NoneNo IPR availablePANTHERPTHR33116:SF47REVERSE TRANSCRIPTASE DOMAIN, ZINC FINGER, CCHC-TYPE-RELATEDcoord: 34..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005495.1Lag0005495.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016740 transferase activity