Lag0005480 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005480
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNase H domain-containing protein
Locationchr6: 19306133 .. 19306648 (-)
RNA-Seq ExpressionLag0005480
SyntenyLag0005480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATCGGAAATGATCGCAGGAGGGGAGGATTTTATTTTACATGTTGATGCAACTTGGGACGAGAAGGTAAAGCGAAGTGGAGTGGAGGTAGTGATTCGTACAAAGCCAGGGACATTGGTGGTCGTCTTACAAAAGGGGATTCCCTTTTACTCAACTTCACTATGTGTCGAAGCGGTAGCAGTCCTTGAGGGTTTTAAATTGGCAACTCAGAGGAACATCCATAGAGTTACGATTTGCTCGGATTCCCTATCGTTGATTTCCACTCTTCTTCTGACAGAATGGTGTCAAGCGGAATGCTTTCCAATTGTGTCAGATATCCAACAATTGGGGACTTTATTTCAACAGATCAGTTATTGCCATGTGAATCGTGAATACAACCGTTTGTCTCATGAATTAGCTAGATTAGACATGGTTTCAACTACTCGATTTTGGAGTAGGAACTTTCCAATTTGGATAGAAGATATAGCTCGTTGTGAGTTGTGTTGTTTTGTTACCCCACTGGAGCTTTTTTGA

mRNA sequence

ATGGTATCGGAAATGATCGCAGGAGGGGAGGATTTTATTTTACATGTTGATGCAACTTGGGACGAGAAGGTAAAGCGAAGTGGAGTGGAGGTAGTGATTCGTACAAAGCCAGGGACATTGGTGGTCGTCTTACAAAAGGGGATTCCCTTTTACTCAACTTCACTATGTGTCGAAGCGGTAGCAGTCCTTGAGGGTTTTAAATTGGCAACTCAGAGGAACATCCATAGAGTTACGATTTGCTCGGATTCCCTATCGTTGATTTCCACTCTTCTTCTGACAGAATGGTGTCAAGCGGAATGCTTTCCAATTGTGTCAGATATCCAACAATTGGGGACTTTATTTCAACAGATCAGTTATTGCCATGTGAATCGTGAATACAACCGTTTGTCTCATGAATTAGCTAGATTAGACATGGTTTCAACTACTCGATTTTGGAGTAGGAACTTTCCAATTTGGATAGAAGATATAGCTCGTTGTGAGTTGTGTTGTTTTGTTACCCCACTGGAGCTTTTTTGA

Coding sequence (CDS)

ATGGTATCGGAAATGATCGCAGGAGGGGAGGATTTTATTTTACATGTTGATGCAACTTGGGACGAGAAGGTAAAGCGAAGTGGAGTGGAGGTAGTGATTCGTACAAAGCCAGGGACATTGGTGGTCGTCTTACAAAAGGGGATTCCCTTTTACTCAACTTCACTATGTGTCGAAGCGGTAGCAGTCCTTGAGGGTTTTAAATTGGCAACTCAGAGGAACATCCATAGAGTTACGATTTGCTCGGATTCCCTATCGTTGATTTCCACTCTTCTTCTGACAGAATGGTGTCAAGCGGAATGCTTTCCAATTGTGTCAGATATCCAACAATTGGGGACTTTATTTCAACAGATCAGTTATTGCCATGTGAATCGTGAATACAACCGTTTGTCTCATGAATTAGCTAGATTAGACATGGTTTCAACTACTCGATTTTGGAGTAGGAACTTTCCAATTTGGATAGAAGATATAGCTCGTTGTGAGTTGTGTTGTTTTGTTACCCCACTGGAGCTTTTTTGA

Protein sequence

MVSEMIAGGEDFILHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQLGTLFQQISYCHVNREYNRLSHELARLDMVSTTRFWSRNFPIWIEDIARCELCCFVTPLELF
Homology
BLAST of Lag0005480 vs. NCBI nr
Match: XP_023904539.1 (uncharacterized protein LOC112016250 [Quercus suber])

HSP 1 Score: 76.3 bits (186), Expect = 2.9e-10
Identity = 46/157 (29.30%), Postives = 83/157 (52.87%), Query Frame = 0

Query: 10  EDFILHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLA 69
           + + ++ D    +   ++G+ VVIR   G ++V L + IP  ST++ VEA+A     ++A
Sbjct: 216 QQYKINFDGALFKDENQAGLGVVIRDSKGQVMVSLAQRIPLPSTAIEVEALAARRALEMA 275

Query: 70  TQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQLGTLFQQISYCHVNREYNRL 129
            +  +++  +  DSL L+  L       A+   IV+DI  L + F  IS+ HV R  N +
Sbjct: 276 LETGLNKGVLEGDSLILMKALKSNSHSLAQFGHIVNDIHYLASQFPMISFSHVRRHCNSV 335

Query: 130 SHELARLDM-VSTTRFWSRNFPIWIEDIARCELCCFV 166
           +H +AR  +  S+ + W  + P+ I D+ + +L   V
Sbjct: 336 AHSIARRALSFSSLQVWMEDIPLEIADVLQVDLIALV 372

BLAST of Lag0005480 vs. NCBI nr
Match: XP_023897448.1 (uncharacterized protein LOC112009346 [Quercus suber])

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-09
Identity = 47/157 (29.94%), Postives = 82/157 (52.23%), Query Frame = 0

Query: 10  EDFILHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLA 69
           + + ++ D    +   ++G+ VVIR   G ++V L + IP  ST++ VEA+A     +LA
Sbjct: 146 QQYKINFDGALFKDENQAGLGVVIRDSKGQVMVSLAQRIPLPSTAIEVEALAARRALELA 205

Query: 70  TQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQLGTLFQQISYCHVNREYNRL 129
            +  +++  +  DSL L++ L       A+   IV+DI  L   F  IS+ HV R  N +
Sbjct: 206 LETGLNKGVLEGDSLILMNALKSNSHSLAQFGHIVNDIHYLAFQFPMISFSHVRRHCNSV 265

Query: 130 SHELARLDM-VSTTRFWSRNFPIWIEDIARCELCCFV 166
           +H +AR  +  S+ + W  + P  I D+ + +L   V
Sbjct: 266 AHSIARRALSFSSLQVWMEDVPPEIADVLQTDLIALV 302

BLAST of Lag0005480 vs. NCBI nr
Match: XP_030963888.1 (uncharacterized protein LOC115985057 [Quercus lobata])

HSP 1 Score: 71.6 bits (174), Expect = 7.3e-09
Identity = 46/149 (30.87%), Postives = 77/149 (51.68%), Query Frame = 0

Query: 14  LHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRN 73
           ++ D+    K +R+G+ V I+ + G ++V   + IP   T + VEA+A  +  +LA    
Sbjct: 61  INFDSALFMKEQRAGIGVAIQNENGLIMVSSSQQIPLPGTVVEVEALAARKALELALDCG 120

Query: 74  IHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQLGTLFQQISYCHVNREYNRLSHEL 133
           + RV +  D   L+ TL  T    A+   I  DI+   ++FQ IS+ HV R  N ++H L
Sbjct: 121 LDRVILEGDCEILMKTLQTTSKSLAQFGKIAEDIRVYASMFQDISFSHVRRNCNSVAHSL 180

Query: 134 ARLDMVST-TRFWSRNFPIWIEDIARCEL 162
           AR  ++S     W  N P  +E + + +L
Sbjct: 181 ARRAILSPHFLVWMENVPPDVEPVFQADL 209

BLAST of Lag0005480 vs. NCBI nr
Match: XP_030927178.1 (uncharacterized protein LOC115953579 [Quercus lobata])

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-08
Identity = 43/132 (32.58%), Postives = 69/132 (52.27%), Query Frame = 0

Query: 25   KRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSL 84
            +R+G+ V IR K G ++V   + IP   T + VEA+   +  +LA    + RV +  D  
Sbjct: 1040 QRAGIGVAIRNKNGLIMVSSSQQIPLPGTVVEVEALVARKALELALNCGLDRVILEGDCK 1099

Query: 85   SLISTLLLTEWCQAECFPIVSDIQQLGTLFQQISYCHVNREYNRLSHELARLDMVSTTRF 144
             L+ TL       A+   I  DI+   ++FQ IS+ HV R  N ++H LAR  ++S    
Sbjct: 1100 ILMKTLQTASKSLAQFGKIAEDIRVYASMFQDISFSHVRRNCNSVAHSLARRAILSP--- 1159

Query: 145  WSRNFPIWIEDI 157
               +F +W+ED+
Sbjct: 1160 ---HFLVWMEDV 1165

BLAST of Lag0005480 vs. NCBI nr
Match: XP_027088768.1 (uncharacterized protein LOC113710130 [Coffea arabica])

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-08
Identity = 41/146 (28.08%), Postives = 75/146 (51.37%), Query Frame = 0

Query: 14  LHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRN 73
           L+ DA + + ++R+G+ VV R   G L+ V  +     S     EA A+  G ++A + N
Sbjct: 45  LNTDAAFSQNLERTGIGVVARNAEGELMKVWARAELKRSEPQVEEAAAIRMGMQMAWKAN 104

Query: 74  IHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQLGTLFQQISYCHVNREYNRLSHEL 133
              V + SD   ++  +   +  Q     I+ DI  +  LF+Q ++  V+R+ NR +H +
Sbjct: 105 WRAVELQSDCKEVVDMINKKQKQQNNIVVILEDIANMRCLFEQCTFSFVHRDGNRCAHSV 164

Query: 134 ARLDMVSTTRF-WSRNFPIWIEDIAR 159
           A+  +  TT   W   FP+W+++ A+
Sbjct: 165 AKFAVKLTTNVEWDECFPMWLQEEAQ 190

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023904539.12.9e-1029.30uncharacterized protein LOC112016250 [Quercus suber][more]
XP_023897448.11.5e-0929.94uncharacterized protein LOC112009346 [Quercus suber][more]
XP_030963888.17.3e-0930.87uncharacterized protein LOC115985057 [Quercus lobata][more]
XP_030927178.12.1e-0832.58uncharacterized protein LOC115953579 [Quercus lobata][more]
XP_027088768.14.7e-0828.08uncharacterized protein LOC113710130 [Coffea arabica][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 16..135
e-value: 2.8E-17
score: 62.7
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 11..143
e-value: 1.2E-14
score: 56.4
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 14..149
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 14..135
e-value: 1.7557E-9
score: 51.1608
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 13..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005480.1Lag0005480.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity