Lag0005379 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005379
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDUF4283 domain-containing protein
Locationchr6: 15699936 .. 15700337 (-)
RNA-Seq ExpressionLag0005379
SyntenyLag0005379
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCGTTGAAAAATGCACTAAATAAGCTTACTTCATCTGAGGTGGTCAAGTCCATCTCCACCTTAGCTGAAGGATATTCAAAGAAGGAAAATCAAGATGTCGAAGAAGTTCAACATGTGGGAAATAGAGCATTCACTCAAGGAGTACCGAACTTCTACCATCTCAGTTTGCGTAATTATGAGAACTTTTCTTACTCCAACACCAAAAACGTATTGCAATCACCGCCAGGATTTGCCTCATCTAGTGTCACAGAAAAGAAAAGCAACCTAGAGGAGATGGTGGCCATGTTTATCAAGGAGCATAAGGTTTTAAATGTGAATCTCCAGACAACAGTTAATAACCACGACACAGCTCTTAAGAATATGGAAGTTCAGATAGGTCAGATCACTTCAGGGTGA

mRNA sequence

ATGGCATCGTTGAAAAATGCACTAAATAAGCTTACTTCATCTGAGGTGGTCAAGTCCATCTCCACCTTAGCTGAAGGATATTCAAAGAAGGAAAATCAAGATGTCGAAGAAGTTCAACATGTGGGAAATAGAGCATTCACTCAAGGAGTACCGAACTTCTACCATCTCAGTTTGCGTAATTATGAGAACTTTTCTTACTCCAACACCAAAAACGTATTGCAATCACCGCCAGGATTTGCCTCATCTAGTGTCACAGAAAAGAAAAGCAACCTAGAGGAGATGGTGGCCATGTTTATCAAGGAGCATAAGGTTTTAAATGTGAATCTCCAGACAACAGTTAATAACCACGACACAGCTCTTAAGAATATGGAAGTTCAGATAGGTCAGATCACTTCAGGGTGA

Coding sequence (CDS)

ATGGCATCGTTGAAAAATGCACTAAATAAGCTTACTTCATCTGAGGTGGTCAAGTCCATCTCCACCTTAGCTGAAGGATATTCAAAGAAGGAAAATCAAGATGTCGAAGAAGTTCAACATGTGGGAAATAGAGCATTCACTCAAGGAGTACCGAACTTCTACCATCTCAGTTTGCGTAATTATGAGAACTTTTCTTACTCCAACACCAAAAACGTATTGCAATCACCGCCAGGATTTGCCTCATCTAGTGTCACAGAAAAGAAAAGCAACCTAGAGGAGATGGTGGCCATGTTTATCAAGGAGCATAAGGTTTTAAATGTGAATCTCCAGACAACAGTTAATAACCACGACACAGCTCTTAAGAATATGGAAGTTCAGATAGGTCAGATCACTTCAGGGTGA

Protein sequence

MASLKNALNKLTSSEVVKSISTLAEGYSKKENQDVEEVQHVGNRAFTQGVPNFYHLSLRNYENFSYSNTKNVLQSPPGFASSSVTEKKSNLEEMVAMFIKEHKVLNVNLQTTVNNHDTALKNMEVQIGQITSG
Homology
BLAST of Lag0005379 vs. NCBI nr
Match: XP_030970157.1 (uncharacterized protein LOC115990464 [Quercus lobata])

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-14
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 0

Query: 1   MASLKNALNKLTSSEVVKSISTLAEGYSKKENQDV--EEVQHVGNRAFT---QGVPNFYH 60
           +ASL + ++ LT+  + +S   +A         +V  E+VQ++ NR +      +PN+YH
Sbjct: 244 VASLSHQVSTLTTQRIPQSAEYVAVSSMTVPMNEVSQEQVQYINNRNYNYRGNPMPNYYH 303

Query: 61  LSLRNYENFSYSNTKNVLQSPPGFASSSVTEKKSNLEEMVAMFIKEHKVLNV-------N 120
             LRN+ENFSY NTKNVLQ PPGF  S  +EKK +LE+ +  F++E K           N
Sbjct: 304 PGLRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMVSFVEETKARFKKSDSRLDN 363

Query: 121 LQTTVNNHDTALKNMEVQIGQITS 133
           ++T  NN    +KN+EVQIGQ+ +
Sbjct: 364 IETHCNNMAATMKNLEVQIGQLAT 386

BLAST of Lag0005379 vs. NCBI nr
Match: XP_023929660.1 (uncharacterized protein LOC112040975 [Quercus suber])

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-13
Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = 0

Query: 1   MASLKNALNKLTSSEVVKSISTLAEGYSKKENQDV--EEVQHVGNRAFT---QGVPNFYH 60
           +ASL + ++ LT+  + +S+  +A         +   E VQ++ NR +      +PN+YH
Sbjct: 244 VASLSHQVSALTTQRIPQSVEYVAASSMTVPMNEASQEHVQYINNRNYNYHGNPMPNYYH 303

Query: 61  LSLRNYENFSYSNTKNVLQSPPGFASSSVTEKKSNLEEMVAMFIKEHKV-------LNVN 120
             LRN+ENFSY NTKNVLQ PPGF  S  +EKK +LE+ +  F++E K           N
Sbjct: 304 PGLRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMVSFVEETKARFRKSDSQLDN 363

Query: 121 LQTTVNNHDTALKNMEVQIGQITS 133
           ++T  +N    +KN+EVQIGQ+ +
Sbjct: 364 IETHCSNMGAIMKNLEVQIGQLAT 386

BLAST of Lag0005379 vs. NCBI nr
Match: WP_217833148.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-13
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 0

Query: 48  QGVPNFYHLSLRNYENFSYSNTKNVLQSPPGFAS--SSVTEKKSNLEEMVAMFIKEHKVL 107
           Q +P  YH +LRN+ENFSY+N +NVLQ PPG ++   S TEKKSNLE+++  FIKE +  
Sbjct: 8   QQLPTHYHPNLRNHENFSYANNRNVLQGPPGLSNVGPSHTEKKSNLEDLMIEFIKESRGR 67

Query: 108 NVNLQTTVNNHDTALKNMEVQIGQITS 133
              L++TV +H  A+ N+EVQI QI +
Sbjct: 68  TTALESTVQSHGKAIHNIEVQISQIAT 94

BLAST of Lag0005379 vs. NCBI nr
Match: XP_023874613.1 (uncharacterized protein LOC111987139 [Quercus suber])

HSP 1 Score: 85.5 bits (210), Expect = 3.8e-13
Identity = 54/144 (37.50%), Postives = 83/144 (57.64%), Query Frame = 0

Query: 1   MASLKNALNKLTSSEVVKSISTLAEGYSKKENQDV--EEVQHVGNRAFT---QGVPNFYH 60
           +ASL + ++ LT+  + +    +A         +   E+VQ++ NR +      +PN+YH
Sbjct: 244 VASLSHQVSALTTQRIPQGAEYVAASSMTVPMNEASQEQVQYINNRNYNYRGNPMPNYYH 303

Query: 61  LSLRNYENFSYSNTKNVLQSPPGFASSSVTEKKSNLEEMVAMFIKEHKVLNV-------N 120
             LRN+ENFSY NTKNVLQ PPGF  S  +EKK +LE+ +  F++E K           N
Sbjct: 304 PGLRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMVSFVEETKATFKKSDSQLDN 363

Query: 121 LQTTVNNHDTALKNMEVQIGQITS 133
           ++T  +N    +KN+EVQIGQ+ +
Sbjct: 364 IETHCSNMGATMKNLEVQIGQLAT 386

BLAST of Lag0005379 vs. NCBI nr
Match: XP_023903214.1 (uncharacterized protein LOC112015077 [Quercus suber])

HSP 1 Score: 85.1 bits (209), Expect = 4.9e-13
Identity = 54/144 (37.50%), Postives = 84/144 (58.33%), Query Frame = 0

Query: 1   MASLKNALNKLTSSEVVKSISTLAEGYSKKENQDV--EEVQHVGNRAFT---QGVPNFYH 60
           +ASL + ++ L++  + +S   +A         +   E+VQ++ NR +      +PN+YH
Sbjct: 244 VASLSHQVSALSTQRIPQSAEYVAASSMTVPMNEASQEQVQYINNRNYNYRGNPMPNYYH 303

Query: 61  LSLRNYENFSYSNTKNVLQSPPGFASSSVTEKKSNLEEMVAMFIKEHKVLNV-------N 120
             LRN+ENFSY NTKNVLQ PPGF  S  +EKK +LE+ +  F++E K           N
Sbjct: 304 PGLRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMVSFVEETKARFKKSDSRLDN 363

Query: 121 LQTTVNNHDTALKNMEVQIGQITS 133
           ++T  +N    +KN+EVQIGQ+ +
Sbjct: 364 IETHCSNMGATMKNLEVQIGQLAT 386

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030970157.12.6e-1439.58uncharacterized protein LOC115990464 [Quercus lobata][more]
XP_023929660.11.7e-1338.19uncharacterized protein LOC112040975 [Quercus suber][more]
WP_217833148.12.9e-1351.72hypothetical protein, partial [Synechococcus sp. PCC 7002][more]
XP_023874613.13.8e-1337.50uncharacterized protein LOC111987139 [Quercus suber][more]
XP_023903214.14.9e-1337.50uncharacterized protein LOC112015077 [Quercus suber][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005379.1Lag0005379.1mRNA