Lag0005372 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005372
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionprotein ROOT PRIMORDIUM DEFECTIVE 1
Locationchr6: 15414842 .. 15416140 (-)
RNA-Seq ExpressionLag0005372
SyntenyLag0005372
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCAATCCACCTCCATTCCCAAAAAGCTCCAAAGGGTCCGTGACCATGGTTACGATAATTACATGGAAGTTGAGAAAAAAACCCGAAAAGTCCTCAAGTTTCAGGACCTTATTCTCACCCAAATCAATCAAACCATCCCAGTTTCTCGCCTCGATGTCTTATCTCGTCGCCTTGGCTTCAAGCAGCACGAAGTTGGGGCCTTCGTCCTTAAATTCCCTCATGTATTTGAAATCTACGAGCACCCTGTTCAATGGATCCTCTATTGCAGGTTAACCCGAAAAGCCCACCTCCAAATCGAGCAGCAAAAGCAGGCTGTGATTACCCAGATTCCAGATGCTGTGACTCGGCTGAGGAAGCTCTTGATGATGTCCAACAATGGCCGCCTTCGCCTTGAGCACATTCGGATTGCCTGGTCCGAATTCGGGTTACCCGATGATTTCGAGTACTCGATAATTCTCAAGTACCCTCAATTCTTTAGACTGTTTGATGCAAAAGAAACTAGGAATAAGTACATTGAAATTGTAGAAAGGGATCCAAACCTTTACTGTTTGTGCAATAGAGAGAGCTAGGGAGAGAGTTTATAGAGAGAAAGGAAGTGATGCTGAGGATATTAGATTCTCTTTCATAGTGAATTTTCCTCCTGGCTTCAAGATAGGGAAGTATTACAGAATTGCAGTGTGGAAATGGCAGCGACTTCCATATTGGTCGCCTTACGAGGATGTTTCTGAATACGATATGAGGTCCATTGAAGCTCAAAAGAGGATGGAGAAGAGGGCAGTGGCAACAATTCATGAGATGTTGTCCTTGACTATGGAGAAAAAGATCACCTTGGAACGGATTACGCATTTTCGATTAGCGACGAATTTGCCAAAGAAGTTGAAGGAGTTCCTTCTTCAGCACCAGGGAATTTCTACATTTCAACCAGAGGAAACCATGGGAAGCTTCACACTGTTTTCCTCAGGGAGGCTTATAGGAGGAGTGAGTTAATTGAGCCAAATGATGTATATTTGGCTAGAAGGAAGTTGGCTGAGTTGGTTTTGTTTAGTCCAAGGAAGGCAAAAATAGACCGGGAACTTGTTGGGTATAGGAGAGAAAGAGTGGGCTATGATATGGAAAGCTTTAGGACAGATTATGTGGAGGATAAATTTGAACATTTTGGTGCTGGGGACAAAGGCATTGTGAGAGATGTTTTGGACTCAGACATGGGTTCTGATGCTGAATCTGATTACTCTGATGACGATAATGATAATGATGATAGAACTTTCAAGGCAGACGATGTGAATATAACCAAATAG

mRNA sequence

ATGACCCAATCCACCTCCATTCCCAAAAAGCTCCAAAGGGTCCGTGACCATGGTTACGATAATTACATGGAAGTTGAGAAAAAAACCCGAAAAGTCCTCAAGTTTCAGGACCTTATTCTCACCCAAATCAATCAAACCATCCCAGTTTCTCGCCTCGATGTCTTATCTCGTCGCCTTGGCTTCAAGCAGCACGAAGTTGGGGCCTTCGTCCTTAAATTCCCTCATGTATTTGAAATCTACGAGCACCCTGTTCAATGGATCCTCTATTGCAGGTTAACCCGAAAAGCCCACCTCCAAATCGAGCAGCAAAAGCAGGCTGTGATTACCCAGATTCCAGATGCTGTGACTCGGCTGAGGAAGCTCTTGATGATGTCCAACAATGGCCGCCTTCGCCTTGAGCACATTCGGATTGCCTGGTCCGAATTCGGGTTACCCGATGATTTCGAGTACTCGATAATTCTCAAGTACCCTCAATTCTTTAGACTGTTTGATGCAAAAGAAACTAGGAATAAGTACATTGAAATTGTAGAAAGGGATCCAAACCTTTACTTGAATTTTCCTCCTGGCTTCAAGATAGGGAAGTATTACAGAATTGCAGTGTGGAAATGGCAGCGACTTCCATATTGGTCGCCTTACGAGGATGTTTCTGAATACGATATGAGGTCCATTGAAGCTCAAAAGAGGATGGAGAAGAGGGCAGTGGCAACAATTCATGAGATGTTGTCCTTGACTATGGAGAAAAAGATCACCTTGGAACGGATTACGCATTTTCGATTAGCGACGAATTTGCCAAAGAAGTTGAAGGAGTTCCTTCTTCAGCACCAGGGAATTTCTACATTTCAACCAGAGGAAACCATGGGAAGCTTCACACTGTTTTCCTCAGGGAGGCTTATAGGAGGAGCAAAAATAGACCGGGAACTTGTTGGGTATAGGAGAGAAAGAGTGGGCTATGATATGGAAAGCTTTAGGACAGATTATGTGGAGGATAAATTTGAACATTTTGGTGCTGGGGACAAAGGCATTGTGAGAGATGTTTTGGACTCAGACATGGGTTCTGATGCTGAATCTGATTACTCTGATGACGATAATGATAATGATGATAGAACTTTCAAGGCAGACGATGTGAATATAACCAAATAG

Coding sequence (CDS)

ATGACCCAATCCACCTCCATTCCCAAAAAGCTCCAAAGGGTCCGTGACCATGGTTACGATAATTACATGGAAGTTGAGAAAAAAACCCGAAAAGTCCTCAAGTTTCAGGACCTTATTCTCACCCAAATCAATCAAACCATCCCAGTTTCTCGCCTCGATGTCTTATCTCGTCGCCTTGGCTTCAAGCAGCACGAAGTTGGGGCCTTCGTCCTTAAATTCCCTCATGTATTTGAAATCTACGAGCACCCTGTTCAATGGATCCTCTATTGCAGGTTAACCCGAAAAGCCCACCTCCAAATCGAGCAGCAAAAGCAGGCTGTGATTACCCAGATTCCAGATGCTGTGACTCGGCTGAGGAAGCTCTTGATGATGTCCAACAATGGCCGCCTTCGCCTTGAGCACATTCGGATTGCCTGGTCCGAATTCGGGTTACCCGATGATTTCGAGTACTCGATAATTCTCAAGTACCCTCAATTCTTTAGACTGTTTGATGCAAAAGAAACTAGGAATAAGTACATTGAAATTGTAGAAAGGGATCCAAACCTTTACTTGAATTTTCCTCCTGGCTTCAAGATAGGGAAGTATTACAGAATTGCAGTGTGGAAATGGCAGCGACTTCCATATTGGTCGCCTTACGAGGATGTTTCTGAATACGATATGAGGTCCATTGAAGCTCAAAAGAGGATGGAGAAGAGGGCAGTGGCAACAATTCATGAGATGTTGTCCTTGACTATGGAGAAAAAGATCACCTTGGAACGGATTACGCATTTTCGATTAGCGACGAATTTGCCAAAGAAGTTGAAGGAGTTCCTTCTTCAGCACCAGGGAATTTCTACATTTCAACCAGAGGAAACCATGGGAAGCTTCACACTGTTTTCCTCAGGGAGGCTTATAGGAGGAGCAAAAATAGACCGGGAACTTGTTGGGTATAGGAGAGAAAGAGTGGGCTATGATATGGAAAGCTTTAGGACAGATTATGTGGAGGATAAATTTGAACATTTTGGTGCTGGGGACAAAGGCATTGTGAGAGATGTTTTGGACTCAGACATGGGTTCTGATGCTGAATCTGATTACTCTGATGACGATAATGATAATGATGATAGAACTTTCAAGGCAGACGATGTGAATATAACCAAATAG

Protein sequence

MTQSTSIPKKLQRVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLDVLSRRLGFKQHEVGAFVLKFPHVFEIYEHPVQWILYCRLTRKAHLQIEQQKQAVITQIPDAVTRLRKLLMMSNNGRLRLEHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAKETRNKYIEIVERDPNLYLNFPPGFKIGKYYRIAVWKWQRLPYWSPYEDVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKEFLLQHQGISTFQPEETMGSFTLFSSGRLIGGAKIDRELVGYRRERVGYDMESFRTDYVEDKFEHFGAGDKGIVRDVLDSDMGSDAESDYSDDDNDNDDRTFKADDVNITK
Homology
BLAST of Lag0005372 vs. NCBI nr
Match: XP_038876292.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida] >XP_038876293.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida])

HSP 1 Score: 601.7 bits (1550), Expect = 4.5e-168
Identity = 322/432 (74.54%), Postives = 344/432 (79.63%), Query Frame = 0

Query: 1   MTQSTSIPKKLQRVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLDVLSRRLG 60
           MTQSTSIPKKLQRVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLD+L+RRLG
Sbjct: 34  MTQSTSIPKKLQRVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLDILARRLG 93

Query: 61  FKQHEVGAFVLKFPHVFEIYEHPVQWILYCRLTRKAHLQIEQQKQAVITQIPDAVTRLRK 120
           FKQHE GAFVLKFPHVFEIYEHPVQ ILYCRLTRKAHLQIEQQKQAVI QIPDAVTRLRK
Sbjct: 94  FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKQAVIAQIPDAVTRLRK 153

Query: 121 LLMMSNNGRLRLEHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAKETRNKYIEIVERDP 180
           LLMMSNNGRLRLEHIRIA SEFGLPDDFEYS++LKYPQFFRLFDAKETRNKYIEIVERDP
Sbjct: 154 LLMMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKYPQFFRLFDAKETRNKYIEIVERDP 213

Query: 181 NL---------------------------YLNFPPGFKIGKYYRIAVWKWQRLPYWSPYE 240
           NL                            +NFPPGFKIGKY+RIA+WKWQRLPYWSPYE
Sbjct: 214 NLAVCAIERARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYFRIAMWKWQRLPYWSPYE 273

Query: 241 DVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKEFLLQ 300
           DVS+YDMRSIEA KRMEKRAVATIHEMLSLT+EKKITLERI HFRLA NLP KLK+FLLQ
Sbjct: 274 DVSKYDMRSIEALKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMNLPNKLKDFLLQ 333

Query: 301 HQGISTFQPEETMGSF-TLF-----SSGRLI--------------------GGAKIDREL 360
           HQGI         G   T+F       G LI                      AK+D+EL
Sbjct: 334 HQGIFYISTRGNHGKLHTVFLREGYRRGELIEPNDVYLARRKLAELVLLSPRKAKLDKEL 393

Query: 361 VGYRRERVGYDMESFRTDYVEDKFEHFGAGDKGIVRDVLDSDMGSDAESDYSDDDNDNDD 380
           VGYRRERVGYDMESFRTDYVEDKF+ F  G+KG VRDVLDSD+ SD E ++SDDDN + D
Sbjct: 394 VGYRRERVGYDMESFRTDYVEDKFDDFAVGNKGNVRDVLDSDLDSDVEPNFSDDDNHSVD 453

BLAST of Lag0005372 vs. NCBI nr
Match: XP_022929109.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita moschata])

HSP 1 Score: 585.9 bits (1509), Expect = 2.5e-163
Identity = 316/432 (73.15%), Postives = 342/432 (79.17%), Query Frame = 0

Query: 1   MTQSTSIPKKLQRVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLDVLSRRLG 60
           M+QSTSIP+KL+RVRDHGYDNYM+VEKKTRKVLKFQDLILTQINQTIPVSRLDV +RRLG
Sbjct: 35  MSQSTSIPRKLERVRDHGYDNYMDVEKKTRKVLKFQDLILTQINQTIPVSRLDVSARRLG 94

Query: 61  FKQHEVGAFVLKFPHVFEIYEHPVQWILYCRLTRKAHLQIEQQKQAVITQIPDAVTRLRK 120
           FKQHE GAFVLKFPHVFEIYEHPVQ ILYCRLTRKAHLQIEQ+KQAVI QIPDAVTRLRK
Sbjct: 95  FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQEKQAVIAQIPDAVTRLRK 154

Query: 121 LLMMSNNGRLRLEHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAKETRNKYIEIVERDP 180
           LLMMSNNGRLRLEHIRIA SEFGLPDDFEYS++LKYPQFFRLFDAKETRNKYIEIVERDP
Sbjct: 155 LLMMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKYPQFFRLFDAKETRNKYIEIVERDP 214

Query: 181 NL---------------------------YLNFPPGFKIGKYYRIAVWKWQRLPYWSPYE 240
           NL                            +NFPPGFKIGKYYRIAVWKWQRLPYWSPYE
Sbjct: 215 NLTVCAIEKARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAVWKWQRLPYWSPYE 274

Query: 241 DVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKEFLLQ 300
           DVSEYDMRSIEAQKRMEKRAVATIHEML LT+EKKI+LERI HFRLA +LPKKLK+FLLQ
Sbjct: 275 DVSEYDMRSIEAQKRMEKRAVATIHEMLCLTVEKKISLERIAHFRLAMDLPKKLKDFLLQ 334

Query: 301 HQGISTFQPEETMGSF-TLF-----SSGRLI--------------------GGAKIDREL 360
           HQGI         G   T+F       G LI                      AK++REL
Sbjct: 335 HQGIFYISTRGNHGKLHTIFLREAYRRGELIEPNDVYLARRTLAELVLLSPRKAKLNREL 394

Query: 361 VGYRRERVGYDMESFRTDYVEDKFEHFGAGDKGIVRDVLDSDMGSDAESDYSDDDNDNDD 380
           VGYRRERVGYDMESFR D ++D    +GAGD+G VRDVLDSD+GSD+ESD+SDD N + D
Sbjct: 395 VGYRRERVGYDMESFRPDKLDD----YGAGDRGNVRDVLDSDVGSDSESDFSDDSNRSVD 454

BLAST of Lag0005372 vs. NCBI nr
Match: KAG6579690.1 (Protein ROOT PRIMORDIUM DEFECTIVE 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 583.2 bits (1502), Expect = 1.6e-162
Identity = 316/432 (73.15%), Postives = 340/432 (78.70%), Query Frame = 0

Query: 1   MTQSTSIPKKLQRVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLDVLSRRLG 60
           M+QSTSIP+KL+RVRDHGYDNYM+VEKKTRKVLKFQDLILTQINQTIPVSRLDV +RRLG
Sbjct: 1   MSQSTSIPRKLERVRDHGYDNYMDVEKKTRKVLKFQDLILTQINQTIPVSRLDVSARRLG 60

Query: 61  FKQHEVGAFVLKFPHVFEIYEHPVQWILYCRLTRKAHLQIEQQKQAVITQIPDAVTRLRK 120
           FKQHE GAFVLKFPHVFEIYEHPVQ ILYCRLTRKAHLQIEQ+KQAVI QIPDAVTRLRK
Sbjct: 61  FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQEKQAVIAQIPDAVTRLRK 120

Query: 121 LLMMSNNGRLRLEHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAKETRNKYIEIVERDP 180
           LLMMSNNGRLRLEHIRIA SEFGLPDDFEYS++LKYPQFFRLFDAKETRNKYIEIVERDP
Sbjct: 121 LLMMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKYPQFFRLFDAKETRNKYIEIVERDP 180

Query: 181 NL---------------------------YLNFPPGFKIGKYYRIAVWKWQRLPYWSPYE 240
           NL                            +NFPPGFKIGKYYRIAVWKWQRLPYWSPYE
Sbjct: 181 NLTVCAIEKARERVYREKGSEAEDIRFSFIVNFPPGFKIGKYYRIAVWKWQRLPYWSPYE 240

Query: 241 DVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKEFLLQ 300
           DVSEYDMRSIEAQKRMEKRAVATIHEML LT+EKKI+LERI HFRLA +LPKKLK+FLLQ
Sbjct: 241 DVSEYDMRSIEAQKRMEKRAVATIHEMLCLTVEKKISLERIAHFRLAMDLPKKLKDFLLQ 300

Query: 301 HQGISTFQPEETMGSF-TLF-----SSGRLI--------------------GGAKIDREL 360
           HQGI         G   T+F       G LI                      AK++REL
Sbjct: 301 HQGIFYISTRGNHGKLHTIFLREAYRRGELIEPNDVYLARRTLAELVLLSPRKAKLNREL 360

Query: 361 VGYRRERVGYDMESFRTDYVEDKFEHFGAGDKGIVRDVLDSDMGSDAESDYSDDDNDNDD 380
           VGYRRERVGYDMESFR D ++D    +GAGD+G VRDVLDSDMGSD+ESD SDD N +  
Sbjct: 361 VGYRRERVGYDMESFRPDKLDD----YGAGDRGNVRDVLDSDMGSDSESDLSDDSNRSVG 420

BLAST of Lag0005372 vs. NCBI nr
Match: KAG7017132.1 (Protein ROOT PRIMORDIUM DEFECTIVE 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 581.6 bits (1498), Expect = 4.8e-162
Identity = 315/432 (72.92%), Postives = 340/432 (78.70%), Query Frame = 0

Query: 1   MTQSTSIPKKLQRVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLDVLSRRLG 60
           M+QSTSIP+KL+RVRDHGYDNYM+VEKKTRKVLKFQDLILTQINQTIPVSRLDV +RRLG
Sbjct: 1   MSQSTSIPRKLERVRDHGYDNYMDVEKKTRKVLKFQDLILTQINQTIPVSRLDVSARRLG 60

Query: 61  FKQHEVGAFVLKFPHVFEIYEHPVQWILYCRLTRKAHLQIEQQKQAVITQIPDAVTRLRK 120
           FKQHE GAFVLKFPHVFEIYEHPVQ ILYCRLTRKAHLQIEQ+KQAVI QIPDAVTRLRK
Sbjct: 61  FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQEKQAVIAQIPDAVTRLRK 120

Query: 121 LLMMSNNGRLRLEHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAKETRNKYIEIVERDP 180
           LLMMSNNGRLRLEHIRIA SEFGLPDDFEYS++LKYPQFFRLFDAKETRNKYIEIVERDP
Sbjct: 121 LLMMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKYPQFFRLFDAKETRNKYIEIVERDP 180

Query: 181 NL---------------------------YLNFPPGFKIGKYYRIAVWKWQRLPYWSPYE 240
           NL                            +NFPPGFKIGKYYRIAVWKWQRLPYWSPYE
Sbjct: 181 NLTVCAIEKARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAVWKWQRLPYWSPYE 240

Query: 241 DVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKEFLLQ 300
           DVSEYDMRSIEAQKRMEKRAVATIHEML LT+EKKI+LERI HFRLA +LPKKLK+FLLQ
Sbjct: 241 DVSEYDMRSIEAQKRMEKRAVATIHEMLCLTVEKKISLERIAHFRLAMDLPKKLKDFLLQ 300

Query: 301 HQGISTFQPEETMGSF-TLF-----SSGRLI--------------------GGAKIDREL 360
           HQGI         G   T+F       G LI                      AK++REL
Sbjct: 301 HQGIFYISTRGNHGKLHTIFLREAYRRGELIEPNDVYLARRTLAELVLLSPRKAKLNREL 360

Query: 361 VGYRRERVGYDMESFRTDYVEDKFEHFGAGDKGIVRDVLDSDMGSDAESDYSDDDNDNDD 380
           VGYRRERVGYDMESFR D ++D    +GAGD+G VRDVLDSD+GSD+ESD SDD N +  
Sbjct: 361 VGYRRERVGYDMESFRPDKLDD----YGAGDRGNVRDVLDSDVGSDSESDLSDDSNRSVG 420

BLAST of Lag0005372 vs. NCBI nr
Match: XP_016898810.1 (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_016898811.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_016898812.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_016898813.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo])

HSP 1 Score: 578.2 bits (1489), Expect = 5.3e-161
Identity = 309/432 (71.53%), Postives = 338/432 (78.24%), Query Frame = 0

Query: 1   MTQSTSIPKKLQRVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLDVLSRRLG 60
           M+QSTSIPK LQRVRDHGYDNYMEVEKK RKVLKFQDLIL+Q NQTIPVSRLD+L+RRLG
Sbjct: 35  MSQSTSIPKNLQRVRDHGYDNYMEVEKKIRKVLKFQDLILSQFNQTIPVSRLDILARRLG 94

Query: 61  FKQHEVGAFVLKFPHVFEIYEHPVQWILYCRLTRKAHLQIEQQKQAVITQIPDAVTRLRK 120
           FKQHE GAFVLKFPHVFEIYEHPVQ ILYCRLTRKAHLQIEQQK+AVI QIPDAVTRLRK
Sbjct: 95  FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRK 154

Query: 121 LLMMSNNGRLRLEHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAKETRNKYIEIVERDP 180
           LLMMSN GRLRLEHIRIA SEFGLPDDFEYS++LK+PQFFRLFDAKETRNKYIEIVERDP
Sbjct: 155 LLMMSNKGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDP 214

Query: 181 NL---------------------------YLNFPPGFKIGKYYRIAVWKWQRLPYWSPYE 240
           +L                            +NFPPGFKIGKY+RIA+WKWQRLPYWSPYE
Sbjct: 215 SLTVCAIERARERVYREQGSDAEDIRFSFIVNFPPGFKIGKYFRIAMWKWQRLPYWSPYE 274

Query: 241 DVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKEFLLQ 300
           D+SEYDMRSIEAQKRMEKRAVATIHEMLSLT+EKK+TLERI HFRLA NLPKKLK+FLLQ
Sbjct: 275 DISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKLTLERIAHFRLAMNLPKKLKDFLLQ 334

Query: 301 HQGISTFQPEETMGSF-TLF-----SSGRLI--------------------GGAKIDREL 360
           HQGI         G   T+F       G L+                      AK+DREL
Sbjct: 335 HQGIFYISTRGNHGKLHTVFLREGYRRGELVEPNDVYLARRHLAELVLLSPRKAKLDREL 394

Query: 361 VGYRRERVGYDMESFRTDYVEDKFEHFGAGDKGIVRDVLDSDMGSDAESDYSDDDNDNDD 380
           VGYRRERVGYDME+ RTDYVEDK + FG  +KG VRDVLDSD+GSD ESD+SDDDN    
Sbjct: 395 VGYRRERVGYDMENCRTDYVEDKSDDFGVENKGNVRDVLDSDIGSDVESDFSDDDN---- 454

BLAST of Lag0005372 vs. ExPASy Swiss-Prot
Match: Q689D6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 1.5e-118
Identity = 217/305 (71.15%), Postives = 246/305 (80.66%), Query Frame = 0

Query: 2   TQSTSIPKKLQRVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLDVLSRR--L 61
           +QST+IPKK  RVRDHGYDNYMEVEKK RKV+KF  LIL+Q N TI +S LD L+RR  L
Sbjct: 35  SQSTTIPKKQDRVRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARRLGL 94

Query: 62  GFKQHEVGAFVLKFPHVFEIYEHPVQWILYCRLTRKAHLQIEQQKQAVITQIPDAVTRLR 121
           GFKQHE GAF+LKFPHVFEIYEHPVQ ILYCRLTRKA  QI  + +AV+ QIPDAVTRLR
Sbjct: 95  GFKQHEPGAFLLKFPHVFEIYEHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDAVTRLR 154

Query: 122 KLLMMSNNGRLRLEHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAKETRNKYIEIVERD 181
           KL+MMSN GR+RLEH+RIA +EFGLP+DFEYS+ILK+PQFFRL D +ETR+KYIEIVE+D
Sbjct: 155 KLVMMSNTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKD 214

Query: 182 PNL---------------------------YLNFPPGFKIGKYYRIAVWKWQRLPYWSPY 241
           PNL                            +NFPPGFKIGKY+RIAVWKWQRLPYWSPY
Sbjct: 215 PNLSICAIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPY 274

Query: 242 EDVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKEFLL 278
           ED+S YD+RS+EAQ R+EKR+VA IHE+LSLT+EKKITLERI HFR   NLPKKLKEFLL
Sbjct: 275 EDISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLL 334

BLAST of Lag0005372 vs. ExPASy Swiss-Prot
Match: Q65XL5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.2e-25
Identity = 89/302 (29.47%), Postives = 155/302 (51.32%), Query Frame = 0

Query: 11  LQRVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLDVLSRRLGF-KQHEVGAF 70
           ++R ++  +DN ++ +KK + VLK ++++++  ++ + +  L    R LG  ++  + A 
Sbjct: 61  VKRRKEIPFDNVIQRDKKLKLVLKLRNILVSNPDRVMSLRDLGRFRRDLGLTRKRRLIAL 120

Query: 71  VLKFPHVFEIYEHPVQWILYCRLTRKA------HLQIEQQKQAVITQIPDAVTRLRKLLM 130
           + +FP VFE+ E  V + L  RLT  A       L ++ + + +      AVT+LRKLLM
Sbjct: 121 LKRFPGVFEVVEEGV-YSLRFRLTPAAERLYLDELHLKNESEGL------AVTKLRKLLM 180

Query: 131 MSNNGRLRLEHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAKETRNKYIEIVERDPNLY 190
           MS + R+ +E I    ++ GLP +F  +I L+YPQ+FR+   +  R   +E+   DP L 
Sbjct: 181 MSQDKRILIEKIAHLKNDLGLPPEFRDTICLRYPQYFRV--VQMDRGPGLELTHWDPELA 240

Query: 191 LN-------------------------------FPPGFKIGKYYRIAVWKWQRLPYWSPY 250
           ++                                P G K+ +     V +++ +PY SPY
Sbjct: 241 VSAAEVAEEENRAREEQERNLIIDRPLKFNRVKLPQGLKLSRGEARRVAQFKEMPYISPY 300

Query: 251 EDVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKEFLL 275
            D S   +RS  A+K  EK A   +HE+LSLT+EK+  ++ +THFR      + L+  L+
Sbjct: 301 SDFSH--LRSGSAEK--EKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQSLRGMLI 349

BLAST of Lag0005372 vs. ExPASy Swiss-Prot
Match: B6TTV8 (Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.1e-23
Identity = 82/302 (27.15%), Postives = 150/302 (49.67%), Query Frame = 0

Query: 11  LQRVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLDVLSRRLGF-KQHEVGAF 70
           ++R ++  +D  ++ +KK + VLK +++++ Q ++ + +  L    R LG  ++  + A 
Sbjct: 55  VKRRKEAPFDTVIQRDKKLKLVLKLRNILVAQPDRVMSLRELGRFRRDLGLTRKRRLIAL 114

Query: 71  VLKFPHVFEIYEHPVQWILYCRLTRKA------HLQIEQQKQAVITQIPDAVTRLRKLLM 130
           + +FP VF++ E  V + L  RLT  A       L++  + + +      AV +LRKLLM
Sbjct: 115 LRRFPGVFDVVEEGV-YSLRFRLTPAAERLYLDELRLRNESEGL------AVAKLRKLLM 174

Query: 131 MSNNGRLRLEHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAKETRNKYIEIVERDPNLY 190
           MS   R+ +E +     + GLP +F  ++ L+YPQ+FR+   +  R   +E+   DP L 
Sbjct: 175 MSQEKRILIEKVAHLKHDLGLPPEFRDTVCLRYPQYFRV--VRMDRGPALELTHWDPELA 234

Query: 191 LN-------------------------------FPPGFKIGKYYRIAVWKWQRLPYWSPY 250
           ++                                P G K+ +     + +++ +PY SPY
Sbjct: 235 VSAAELAEEESRAREAEERNLIIDRPLKFNRVRLPKGLKLTRGEARRIARFKEMPYISPY 294

Query: 251 EDVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKEFLL 275
            D S   +RS   +K  EK A   +HE+LSLT+EK+  ++ +THFR      + L+  ++
Sbjct: 295 ADFSH--LRSGSDEK--EKHACGVVHEILSLTVEKRTLVDHLTHFREEFRFSQSLRGMII 343

BLAST of Lag0005372 vs. ExPASy Swiss-Prot
Match: A0MFS5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.5e-20
Identity = 110/429 (25.64%), Postives = 196/429 (45.69%), Query Frame = 0

Query: 11  LQRVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLDVLSRRLGF-KQHEVGAF 70
           ++R ++  +D+ ++ +KK + VL  + ++++Q ++ + +  L    R LG  K+    A 
Sbjct: 76  VKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMSLRGLGKYRRDLGLKKRRRFIAL 135

Query: 71  VLKFPHVFEIYEHPVQWILYCRLTRKAHLQIEQQKQAVITQIPDA-VTRLRKLLMMSNNG 130
           + K+P VFEI E     + +   +    L +++ +  +  ++ D  V +LRKL+MMS + 
Sbjct: 136 LRKYPGVFEIVEEGAYSLRFKMTSEAERLYLDEMR--IRNELEDVLVVKLRKLVMMSIDK 195

Query: 131 RLRLEHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAKETRNKYIEIVERDP-------- 190
           R+ LE I    ++ GLP +F  +I  +YPQ+FR+      R   +E+   DP        
Sbjct: 196 RILLEKISHLKTDLGLPLEFRDTICQRYPQYFRV--VPTPRGPALELTHWDPELAVSAAE 255

Query: 191 --------------NLYLNFPP---------GFKIGKYYRIAVWKWQRLPYWSPYEDVSE 250
                         NL ++ PP         G  + K     + +++ + Y SPY+D S 
Sbjct: 256 LSEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRKISQFRDMQYISPYKDFSH 315

Query: 251 YDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKEFLLQHQGI 310
               ++E     EK A   IHE+LSLT EK+  ++ +THFR      ++L+  L++H  +
Sbjct: 316 LRSGTLE----KEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDL 375

Query: 311 ----------STFQPEETMGSFTLFSSGRLIGGAKIDRELV---------GYRRERVGYD 370
                     S F  E    S  +      +   K+ R LV         G R++  G +
Sbjct: 376 FYVSLKGERDSVFLREAYRNSELIDKDPLTLVKEKM-RALVSVPRFPRRGGPRKDEEGRE 435

Query: 371 MESFRTDY-VEDKFEHFGAGDKGIVRDVLD-SDMGSDAESDYSDDDN--------DNDDR 378
           +E   +D   E++ E   A +   V   L+  D G+D + D++DD+         D+DD 
Sbjct: 436 VEIDGSDADGEEEEEESDAEEWSDVDGYLEGEDGGNDDDGDWTDDEGEEDVPPNFDDDDE 495

BLAST of Lag0005372 vs. ExPASy Swiss-Prot
Match: Q9ZUZ6 (Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.7e-14
Identity = 73/288 (25.35%), Postives = 130/288 (45.14%), Query Frame = 0

Query: 15  RDHGYDNYMEV--EKKTRKVLKFQDLILTQINQTIPVSRLDVLSRRLGFKQHEVGAFVLK 74
           RD  +DN   +    + + V+  ++ I+ + N+ IP+S +   +R+      ++  F+ K
Sbjct: 33  RDPYFDNIEHILRSSQLKSVVSLKNCIVQEPNRCIPISAISKKTRQFDVST-KIAHFLRK 92

Query: 75  FPHVFEIYEHPVQWILYCRLTRKAHLQIEQQKQAVITQIPDAVTRLRKLLMMSNNGRLRL 134
           FP +FE +  P   + + RLT +A     Q++    T   D   RL+KL++MS +  L L
Sbjct: 93  FPSIFEEFVGPEYNLPWFRLTPEATELDRQERVVYQTSADDLRDRLKKLILMSKDNVLPL 152

Query: 135 EHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAKE----------TRNKYIEIVERDPNL 194
             ++      GLPDD+     +     FR  D ++            +K + +++++   
Sbjct: 153 SIVQGMKWYLGLPDDYLQFPDMNLDSSFRFVDMEDGVKGLAVDYNGGDKVLSVLQKNAMK 212

Query: 195 ---------YLNFPPGFKIGKYYRIAVWKW----QRLPYWSPYEDVSEYDMRSIEAQKRM 254
                     + FP     G   R+ +  W    Q+LPY SPY+D S  D  S  A    
Sbjct: 213 KRRGEVSLEEIEFPLFPSKGCRLRVKIEDWLMEFQKLPYVSPYDDYSCLDPSSDIA---- 272

Query: 255 EKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKEFLLQHQGI 278
           EKR V  +HE+L L +E     +++   +    LP+K+ +   +H  I
Sbjct: 273 EKRVVGFLHELLCLFVEHSAERKKLLCLKKHFGLPQKVHKAFERHPQI 315

BLAST of Lag0005372 vs. ExPASy TrEMBL
Match: A0A6J1EMT6 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita moschata OX=3662 GN=LOC111435790 PE=4 SV=1)

HSP 1 Score: 585.9 bits (1509), Expect = 1.2e-163
Identity = 316/432 (73.15%), Postives = 342/432 (79.17%), Query Frame = 0

Query: 1   MTQSTSIPKKLQRVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLDVLSRRLG 60
           M+QSTSIP+KL+RVRDHGYDNYM+VEKKTRKVLKFQDLILTQINQTIPVSRLDV +RRLG
Sbjct: 35  MSQSTSIPRKLERVRDHGYDNYMDVEKKTRKVLKFQDLILTQINQTIPVSRLDVSARRLG 94

Query: 61  FKQHEVGAFVLKFPHVFEIYEHPVQWILYCRLTRKAHLQIEQQKQAVITQIPDAVTRLRK 120
           FKQHE GAFVLKFPHVFEIYEHPVQ ILYCRLTRKAHLQIEQ+KQAVI QIPDAVTRLRK
Sbjct: 95  FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQEKQAVIAQIPDAVTRLRK 154

Query: 121 LLMMSNNGRLRLEHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAKETRNKYIEIVERDP 180
           LLMMSNNGRLRLEHIRIA SEFGLPDDFEYS++LKYPQFFRLFDAKETRNKYIEIVERDP
Sbjct: 155 LLMMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKYPQFFRLFDAKETRNKYIEIVERDP 214

Query: 181 NL---------------------------YLNFPPGFKIGKYYRIAVWKWQRLPYWSPYE 240
           NL                            +NFPPGFKIGKYYRIAVWKWQRLPYWSPYE
Sbjct: 215 NLTVCAIEKARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAVWKWQRLPYWSPYE 274

Query: 241 DVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKEFLLQ 300
           DVSEYDMRSIEAQKRMEKRAVATIHEML LT+EKKI+LERI HFRLA +LPKKLK+FLLQ
Sbjct: 275 DVSEYDMRSIEAQKRMEKRAVATIHEMLCLTVEKKISLERIAHFRLAMDLPKKLKDFLLQ 334

Query: 301 HQGISTFQPEETMGSF-TLF-----SSGRLI--------------------GGAKIDREL 360
           HQGI         G   T+F       G LI                      AK++REL
Sbjct: 335 HQGIFYISTRGNHGKLHTIFLREAYRRGELIEPNDVYLARRTLAELVLLSPRKAKLNREL 394

Query: 361 VGYRRERVGYDMESFRTDYVEDKFEHFGAGDKGIVRDVLDSDMGSDAESDYSDDDNDNDD 380
           VGYRRERVGYDMESFR D ++D    +GAGD+G VRDVLDSD+GSD+ESD+SDD N + D
Sbjct: 395 VGYRRERVGYDMESFRPDKLDD----YGAGDRGNVRDVLDSDVGSDSESDFSDDSNRSVD 454

BLAST of Lag0005372 vs. ExPASy TrEMBL
Match: A0A1S4DS47 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103504628 PE=4 SV=1)

HSP 1 Score: 578.2 bits (1489), Expect = 2.6e-161
Identity = 309/432 (71.53%), Postives = 338/432 (78.24%), Query Frame = 0

Query: 1   MTQSTSIPKKLQRVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLDVLSRRLG 60
           M+QSTSIPK LQRVRDHGYDNYMEVEKK RKVLKFQDLIL+Q NQTIPVSRLD+L+RRLG
Sbjct: 35  MSQSTSIPKNLQRVRDHGYDNYMEVEKKIRKVLKFQDLILSQFNQTIPVSRLDILARRLG 94

Query: 61  FKQHEVGAFVLKFPHVFEIYEHPVQWILYCRLTRKAHLQIEQQKQAVITQIPDAVTRLRK 120
           FKQHE GAFVLKFPHVFEIYEHPVQ ILYCRLTRKAHLQIEQQK+AVI QIPDAVTRLRK
Sbjct: 95  FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRK 154

Query: 121 LLMMSNNGRLRLEHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAKETRNKYIEIVERDP 180
           LLMMSN GRLRLEHIRIA SEFGLPDDFEYS++LK+PQFFRLFDAKETRNKYIEIVERDP
Sbjct: 155 LLMMSNKGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDP 214

Query: 181 NL---------------------------YLNFPPGFKIGKYYRIAVWKWQRLPYWSPYE 240
           +L                            +NFPPGFKIGKY+RIA+WKWQRLPYWSPYE
Sbjct: 215 SLTVCAIERARERVYREQGSDAEDIRFSFIVNFPPGFKIGKYFRIAMWKWQRLPYWSPYE 274

Query: 241 DVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKEFLLQ 300
           D+SEYDMRSIEAQKRMEKRAVATIHEMLSLT+EKK+TLERI HFRLA NLPKKLK+FLLQ
Sbjct: 275 DISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKLTLERIAHFRLAMNLPKKLKDFLLQ 334

Query: 301 HQGISTFQPEETMGSF-TLF-----SSGRLI--------------------GGAKIDREL 360
           HQGI         G   T+F       G L+                      AK+DREL
Sbjct: 335 HQGIFYISTRGNHGKLHTVFLREGYRRGELVEPNDVYLARRHLAELVLLSPRKAKLDREL 394

Query: 361 VGYRRERVGYDMESFRTDYVEDKFEHFGAGDKGIVRDVLDSDMGSDAESDYSDDDNDNDD 380
           VGYRRERVGYDME+ RTDYVEDK + FG  +KG VRDVLDSD+GSD ESD+SDDDN    
Sbjct: 395 VGYRRERVGYDMENCRTDYVEDKSDDFGVENKGNVRDVLDSDIGSDVESDFSDDDN---- 454

BLAST of Lag0005372 vs. ExPASy TrEMBL
Match: A0A5D3BLZ6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00370 PE=4 SV=1)

HSP 1 Score: 578.2 bits (1489), Expect = 2.6e-161
Identity = 309/432 (71.53%), Postives = 338/432 (78.24%), Query Frame = 0

Query: 1   MTQSTSIPKKLQRVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLDVLSRRLG 60
           M+QSTSIPK LQRVRDHGYDNYMEVEKK RKVLKFQDLIL+Q NQTIPVSRLD+L+RRLG
Sbjct: 1   MSQSTSIPKNLQRVRDHGYDNYMEVEKKIRKVLKFQDLILSQFNQTIPVSRLDILARRLG 60

Query: 61  FKQHEVGAFVLKFPHVFEIYEHPVQWILYCRLTRKAHLQIEQQKQAVITQIPDAVTRLRK 120
           FKQHE GAFVLKFPHVFEIYEHPVQ ILYCRLTRKAHLQIEQQK+AVI QIPDAVTRLRK
Sbjct: 61  FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRK 120

Query: 121 LLMMSNNGRLRLEHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAKETRNKYIEIVERDP 180
           LLMMSN GRLRLEHIRIA SEFGLPDDFEYS++LK+PQFFRLFDAKETRNKYIEIVERDP
Sbjct: 121 LLMMSNKGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDP 180

Query: 181 NL---------------------------YLNFPPGFKIGKYYRIAVWKWQRLPYWSPYE 240
           +L                            +NFPPGFKIGKY+RIA+WKWQRLPYWSPYE
Sbjct: 181 SLTVCAIERARERVYREQGSDAEDIRFSFIVNFPPGFKIGKYFRIAMWKWQRLPYWSPYE 240

Query: 241 DVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKEFLLQ 300
           D+SEYDMRSIEAQKRMEKRAVATIHEMLSLT+EKK+TLERI HFRLA NLPKKLK+FLLQ
Sbjct: 241 DISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKLTLERIAHFRLAMNLPKKLKDFLLQ 300

Query: 301 HQGISTFQPEETMGSF-TLF-----SSGRLI--------------------GGAKIDREL 360
           HQGI         G   T+F       G L+                      AK+DREL
Sbjct: 301 HQGIFYISTRGNHGKLHTVFLREGYRRGELVEPNDVYLARRHLAELVLLSPRKAKLDREL 360

Query: 361 VGYRRERVGYDMESFRTDYVEDKFEHFGAGDKGIVRDVLDSDMGSDAESDYSDDDNDNDD 380
           VGYRRERVGYDME+ RTDYVEDK + FG  +KG VRDVLDSD+GSD ESD+SDDDN    
Sbjct: 361 VGYRRERVGYDMENCRTDYVEDKSDDFGVENKGNVRDVLDSDIGSDVESDFSDDDN---- 420

BLAST of Lag0005372 vs. ExPASy TrEMBL
Match: A0A6J1I4Q3 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita maxima OX=3661 GN=LOC111469138 PE=4 SV=1)

HSP 1 Score: 577.4 bits (1487), Expect = 4.4e-161
Identity = 312/432 (72.22%), Postives = 338/432 (78.24%), Query Frame = 0

Query: 1   MTQSTSIPKKLQRVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLDVLSRRLG 60
           M+QSTSIPKK++RVRDHGYDNYMEVEKK RKVLKFQDLILTQINQTIPVSRLDV +RRLG
Sbjct: 35  MSQSTSIPKKVERVRDHGYDNYMEVEKKIRKVLKFQDLILTQINQTIPVSRLDVSARRLG 94

Query: 61  FKQHEVGAFVLKFPHVFEIYEHPVQWILYCRLTRKAHLQIEQQKQAVITQIPDAVTRLRK 120
           FKQHE GAFVLKFPHVFEIYEHPVQ ILYCRLTRKAHLQI+QQKQAVI QIPDAVTRLRK
Sbjct: 95  FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIQQQKQAVIAQIPDAVTRLRK 154

Query: 121 LLMMSNNGRLRLEHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAKETRNKYIEIVERDP 180
           LLMMSNNGRLRLEHIRIA SEFGLPDDFEYS++LKYPQFFRLFDAKETRNKYIE+VERDP
Sbjct: 155 LLMMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKYPQFFRLFDAKETRNKYIELVERDP 214

Query: 181 NL---------------------------YLNFPPGFKIGKYYRIAVWKWQRLPYWSPYE 240
           NL                            +NFPPGFKIGKYYRIAVWKWQRLPYWSPYE
Sbjct: 215 NLTVCAIEKARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAVWKWQRLPYWSPYE 274

Query: 241 DVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKEFLLQ 300
           DVSEYDMRSIEAQKRMEKRAVATIHEML LT+EKKI+LERI HFR A +LPKKLK+FLLQ
Sbjct: 275 DVSEYDMRSIEAQKRMEKRAVATIHEMLCLTVEKKISLERIAHFRTAMDLPKKLKDFLLQ 334

Query: 301 HQGISTFQPEETMGSF-TLF-----SSGRLI--------------------GGAKIDREL 360
           HQGI         G   T+F       G LI                      A+++REL
Sbjct: 335 HQGIFYISTRGNHGKLHTIFLREAYRRGELIEPNDVYLARRKLAELVLLSPRKAQLNREL 394

Query: 361 VGYRRERVGYDMESFRTDYVEDKFEHFGAGDKGIVRDVLDSDMGSDAESDYSDDDNDNDD 380
           VGYRRERVGYDMES R D ++D    +G GD+G VRDVLDSDMGSD+ESD+SDD N + D
Sbjct: 395 VGYRRERVGYDMESSRPDKLDD----YGVGDRGNVRDVLDSDMGSDSESDFSDDSNRSVD 454

BLAST of Lag0005372 vs. ExPASy TrEMBL
Match: A0A5A7UNY2 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G001020 PE=4 SV=1)

HSP 1 Score: 574.7 bits (1480), Expect = 2.8e-160
Identity = 305/416 (73.32%), Postives = 329/416 (79.09%), Query Frame = 0

Query: 1   MTQSTSIPKKLQRVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLDVLSRRLG 60
           M+QSTSIPK LQRVRDHGYDNYMEVEKK RKVLKFQDLIL+Q NQTIPVSRLD+L+RRLG
Sbjct: 1   MSQSTSIPKNLQRVRDHGYDNYMEVEKKIRKVLKFQDLILSQFNQTIPVSRLDILARRLG 60

Query: 61  FKQHEVGAFVLKFPHVFEIYEHPVQWILYCRLTRKAHLQIEQQKQAVITQIPDAVTRLRK 120
           FKQHE GAFVLKFPHVFEIYEHPVQ ILYCRLTRKAHLQIEQQK+AVI QIPDAVTRLRK
Sbjct: 61  FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRK 120

Query: 121 LLMMSNNGRLRLEHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAKETRNKYIEIVERDP 180
           LLMMSN GRLRLEHIRIA SEFGLPDDFEYS++LK+PQFFRLFDAKETRNKYIEIVERDP
Sbjct: 121 LLMMSNKGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDP 180

Query: 181 NL---------------------------YLNFPPGFKIGKYYRIAVWKWQRLPYWSPYE 240
           +L                            +NFPPGFKIGKY+RIA+WKWQRLPYWSPYE
Sbjct: 181 SLTVCAIERARERVYREQGSDAEDIRFSFIVNFPPGFKIGKYFRIAMWKWQRLPYWSPYE 240

Query: 241 DVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKEFLLQ 300
           D+SEYDMRSIEAQKRMEKRAVATIHEMLSLT+EKK+TLERI HFRLA NLPKKLK+FLLQ
Sbjct: 241 DISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKLTLERIAHFRLAMNLPKKLKDFLLQ 300

Query: 301 HQGISTFQPEETMGSF-TLF-----SSGRLI--------------------GGAKIDREL 360
           HQGI         G   T+F       G L+                      AK+DREL
Sbjct: 301 HQGIFYISTRGNHGKLHTVFLREGYRRGDLVEPNDVYLARRHLAELVLLSPRKAKLDREL 360

Query: 361 VGYRRERVGYDMESFRTDYVEDKFEHFGAGDKGIVRDVLDSDMGSDAESDYSDDDN 364
           VGYRRERVGYDME+ RTDYVEDK + FG  +KG VRDVLDSD+GSD ESD+SDDDN
Sbjct: 361 VGYRRERVGYDMENCRTDYVEDKSDDFGVENKGNVRDVLDSDIGSDVESDFSDDDN 416

BLAST of Lag0005372 vs. TAIR 10
Match: AT4G33495.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 427.6 bits (1098), Expect = 1.1e-119
Identity = 217/305 (71.15%), Postives = 246/305 (80.66%), Query Frame = 0

Query: 2   TQSTSIPKKLQRVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLDVLSRR--L 61
           +QST+IPKK  RVRDHGYDNYMEVEKK RKV+KF  LIL+Q N TI +S LD L+RR  L
Sbjct: 35  SQSTTIPKKQDRVRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARRLGL 94

Query: 62  GFKQHEVGAFVLKFPHVFEIYEHPVQWILYCRLTRKAHLQIEQQKQAVITQIPDAVTRLR 121
           GFKQHE GAF+LKFPHVFEIYEHPVQ ILYCRLTRKA  QI  + +AV+ QIPDAVTRLR
Sbjct: 95  GFKQHEPGAFLLKFPHVFEIYEHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDAVTRLR 154

Query: 122 KLLMMSNNGRLRLEHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAKETRNKYIEIVERD 181
           KL+MMSN GR+RLEH+RIA +EFGLP+DFEYS+ILK+PQFFRL D +ETR+KYIEIVE+D
Sbjct: 155 KLVMMSNTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKD 214

Query: 182 PNL---------------------------YLNFPPGFKIGKYYRIAVWKWQRLPYWSPY 241
           PNL                            +NFPPGFKIGKY+RIAVWKWQRLPYWSPY
Sbjct: 215 PNLSICAIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPY 274

Query: 242 EDVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKEFLL 278
           ED+S YD+RS+EAQ R+EKR+VA IHE+LSLT+EKKITLERI HFR   NLPKKLKEFLL
Sbjct: 275 EDISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLL 334

BLAST of Lag0005372 vs. TAIR 10
Match: AT5G45790.2 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 160.2 bits (404), Expect = 3.2e-39
Identity = 109/315 (34.60%), Postives = 163/315 (51.75%), Query Frame = 0

Query: 13  RVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLDVLSR--RLGFKQHEVGAFV 72
           R RDH  D  +   +K   +L+   L+ ++  +  P   L ++SR   L      VGAF+
Sbjct: 68  RTRDHQLDKIIPQIRKLNIILEISKLMSSK--KRGPFVSLQLMSRWKNLVGLNVNVGAFI 127

Query: 73  LKFPHVFEIYEHPVQWILYCRLTRKAHLQIEQQKQAVITQIPDAVTRLRKLLMMSNNGRL 132
            K+PH FEI+ HP    L C++T K  + I++++  V     DAV R++KLL++S +G L
Sbjct: 128 GKYPHAFEIFTHPFSKNLCCKITEKFKVLIDEEENVVRECEVDAVKRVKKLLLLSKHGVL 187

Query: 133 RLEHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAK-----------------------E 192
           R+  +R+   E GLP+DF  SI+ KY   FRL D +                       E
Sbjct: 188 RVHALRLIRKELGLPEDFRDSILAKYSSEFRLVDLETLELVDRDDESLCVAKVEEWREVE 247

Query: 193 TRNKYIEIVERDPNLYLNFPPGFKIGKYYRIAVWKWQRLPYWSPYEDVSEYDMRSI-EAQ 252
            R K++   E +    ++ P GFKI K +R  +  WQR+PY  P      YD + I    
Sbjct: 248 YREKWLSKFETNYAFPIHLPTGFKIEKGFREELKNWQRVPYVKP------YDRKEISRGL 307

Query: 253 KRMEKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKEFLLQHQGI---STFQPE 299
           +R EKR VA IHE+LSLT+EK + +ER+ HFR    +   ++E +L+H GI   ST    
Sbjct: 308 ERFEKRVVAVIHELLSLTVEKMVEVERLAHFRKDLGIEVNVREVILKHPGIFYVSTKGSS 367

BLAST of Lag0005372 vs. TAIR 10
Match: AT5G45790.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 154.1 bits (388), Expect = 2.3e-37
Identity = 96/260 (36.92%), Postives = 140/260 (53.85%), Query Frame = 0

Query: 66  VGAFVLKFPHVFEIYEHPVQWILYCRLTRKAHLQIEQQKQAVITQIPDAVTRLRKLLMMS 125
           VGAF+ K+PH FEI+ HP    L C++T K  + I++++  V     DAV R++KLL++S
Sbjct: 36  VGAFIGKYPHAFEIFTHPFSKNLCCKITEKFKVLIDEEENVVRECEVDAVKRVKKLLLLS 95

Query: 126 NNGRLRLEHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAK------------------- 185
            +G LR+  +R+   E GLP+DF  SI+ KY   FRL D +                   
Sbjct: 96  KHGVLRVHALRLIRKELGLPEDFRDSILAKYSSEFRLVDLETLELVDRDDESLCVAKVEE 155

Query: 186 ----ETRNKYIEIVERDPNLYLNFPPGFKIGKYYRIAVWKWQRLPYWSPYEDVSEYDMRS 245
               E R K++   E +    ++ P GFKI K +R  +  WQR+PY  P      YD + 
Sbjct: 156 WREVEYREKWLSKFETNYAFPIHLPTGFKIEKGFREELKNWQRVPYVKP------YDRKE 215

Query: 246 I-EAQKRMEKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKEFLLQHQGI---S 299
           I    +R EKR VA IHE+LSLT+EK + +ER+ HFR    +   ++E +L+H GI   S
Sbjct: 216 ISRGLERFEKRVVAVIHELLSLTVEKMVEVERLAHFRKDLGIEVNVREVILKHPGIFYVS 275

BLAST of Lag0005372 vs. TAIR 10
Match: AT1G06440.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 150.6 bits (379), Expect = 2.5e-36
Identity = 105/332 (31.63%), Postives = 157/332 (47.29%), Query Frame = 0

Query: 4   STSIPKKLQRVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLDVLSRRLGFKQ 63
           +TS      R RD  ++  M+  K   KV+  QDL L       P   ++ LS RL  K 
Sbjct: 25  TTSAQYVASRSRDPVFEKLMDKYKNLLKVIAIQDLTLANPTADPPSLSIEFLS-RLSQKL 84

Query: 64  H---EVGAFVLKFPHVFEIYEHPVQWILYCRLTRKAHLQIEQQKQAVITQIPDAVTRLRK 123
           H      +F+ K+PH+F +   PV+   +CRLT  A     Q+  A+   +   V RL +
Sbjct: 85  HLNRGAASFLRKYPHIFHVLYDPVKAEPFCRLTDVAMEISRQEALAITATLSLVVDRLVR 144

Query: 124 LLMMSNNGRLRLEHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAKETRNKYIEIVERDP 183
           LL MS +  + L  +   W E GLPDDFE S+I K P  F+L D  E+    +E+V+ + 
Sbjct: 145 LLSMSISKSIPLRAVFKVWRELGLPDDFEDSVISKNPHLFKLSDGHESNTHILELVQEEE 204

Query: 184 -------------------------------NLYLNFPPGFKIGKYYRIAVWKWQRLPYW 243
                                          +   ++PPG ++ K ++  V +WQRLPY 
Sbjct: 205 KRLEFEAAVEKWRVVECSKEDCSVDRTEIQFSFKHSYPPGMRLSKTFKAKVKEWQRLPYV 264

Query: 244 SPYEDVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKE 299
            PYED+     +S      +EKRAVA  HE L+LT+EK + +E+I+HFR    +   +++
Sbjct: 265 GPYEDMVG-KKKSRSGVMGIEKRAVAIAHEFLNLTVEKMVEVEKISHFRKCFGIDLNIRD 324

BLAST of Lag0005372 vs. TAIR 10
Match: AT5G21970.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-24
Identity = 104/407 (25.55%), Postives = 181/407 (44.47%), Query Frame = 0

Query: 1   MTQSTSIPKKLQRVRDHGYDNYMEVEKKTRKVLKFQDLILTQINQTIPVSRLDVLSRRLG 60
           MT S  +  + +  R    +   E  K   KV+   +++  + +  + V   +   R++ 
Sbjct: 43  MTSSKRVQDRSREKRVQELEIATEKWKIASKVIFLMEVLKGERDMIMTVRSFEQYRRQIN 102

Query: 61  F-KQHEVGAFVLKFPHVFEIYEHPVQWILYCRLTRKAHLQIEQQKQAVITQIPDAVTRLR 120
             K H++  F+ K P +FE+Y+   + +L+C LT      +++  + +      A   + 
Sbjct: 103 LPKPHKISDFIRKSPKLFELYKDQ-RGVLWCGLTEGGEDLLDEHDKLLEENGDKAAEHVT 162

Query: 121 KLLMMSNNGRLRLEHIRIAWSEFGLPDDFEYSIILKYPQFFRLFDAKETRNKYIEIV--- 180
           + LMMS + +L L+ I     +FGLP DF  + +  +PQ F++    +   +Y+E+V   
Sbjct: 163 RCLMMSVDKKLPLDKIVHFRRDFGLPLDFRINWVYNFPQHFKVVKLGD-GEEYLELVSWN 222

Query: 181 -------------------ERDPNLY-----LNFPPGFKIGKYYRIAVWKWQRLPYWSPY 240
                              E  P +      + FPP +K    YR  +  +Q+  Y SPY
Sbjct: 223 PAWAITELEKKTLGITEDCEHKPGMLSLAFPMKFPPSYKKMYRYRGKIEHFQKRSYLSPY 282

Query: 241 EDVSEYDMRSIEA-QKRMEKRAVATIHEMLSLTMEKKITLERITHFRLATNLPKKLKEFL 300
            D      R +EA  K  +KRA+A +HE+LS T+EK++  + +THFR    +P+KL    
Sbjct: 283 ADA-----RGLEAGSKEFDKRAIAVMHELLSFTLEKRLVTDHLTHFRREFVMPQKLMRIF 342

Query: 301 LQHQGISTFQPEETMGSFTLFSSGRLIGGAKIDR-----------ELVGYRRERVGYDME 360
           L+H GI  F   E    F++F +    G   I++           +  GYR  +      
Sbjct: 343 LKHCGI--FYVSERGKRFSVFLTEGYEGPELIEKCPLILWKEKLLKFTGYRGRKRDIQTY 402

Query: 361 SFRTDYVEDKFEHFGAGDKGIVRDVLDSDMGSDAESDYSDDDNDNDD 368
           S   D  E +    G+GD+       D  +G + + DY D   D+D+
Sbjct: 403 SDTLDMEERELLESGSGDE-------DLSVGFEKDGDYDDVVTDDDE 433

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038876292.14.5e-16874.54protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida] >XP_038876293.1 protein ... [more]
XP_022929109.12.5e-16373.15protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita moschata][more]
KAG6579690.11.6e-16273.15Protein ROOT PRIMORDIUM DEFECTIVE 1, partial [Cucurbita argyrosperma subsp. soro... [more]
KAG7017132.14.8e-16272.92Protein ROOT PRIMORDIUM DEFECTIVE 1, partial [Cucurbita argyrosperma subsp. argy... [more]
XP_016898810.15.3e-16171.53PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_016898811.1 PR... [more]
Match NameE-valueIdentityDescription
Q689D61.5e-11871.15Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1... [more]
Q65XL51.2e-2529.47Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japon... [more]
B6TTV84.1e-2327.15Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=... [more]
A0MFS55.5e-2025.64Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3... [more]
Q9ZUZ67.7e-1425.35Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=W... [more]
Match NameE-valueIdentityDescription
A0A6J1EMT61.2e-16373.15protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita moschata OX=3662 GN=LOC11143579... [more]
A0A1S4DS472.6e-16171.53protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103504628 PE=4... [more]
A0A5D3BLZ62.6e-16171.53Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A6J1I4Q34.4e-16172.22protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita maxima OX=3661 GN=LOC111469138 ... [more]
A0A5A7UNY22.8e-16073.32Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
Match NameE-valueIdentityDescription
AT4G33495.11.1e-11971.15Ubiquitin carboxyl-terminal hydrolase family protein [more]
AT5G45790.23.2e-3934.60Ubiquitin carboxyl-terminal hydrolase family protein [more]
AT5G45790.12.3e-3736.92Ubiquitin carboxyl-terminal hydrolase family protein [more]
AT1G06440.12.5e-3631.63Ubiquitin carboxyl-terminal hydrolase family protein [more]
AT5G21970.11.0e-2425.55Ubiquitin carboxyl-terminal hydrolase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021099Plant organelle RNA recognition domainPFAMPF11955PORRcoord: 14..183
e-value: 3.1E-48
score: 164.4
coord: 184..277
e-value: 3.4E-31
score: 108.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 364..379
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 351..379
IPR040295Protein root primordium defective 1-likePANTHERPTHR31476:SF9PROTEIN ROOT PRIMORDIUM DEFECTIVE 1coord: 1..180
IPR040295Protein root primordium defective 1-likePANTHERPTHR31476:SF9PROTEIN ROOT PRIMORDIUM DEFECTIVE 1coord: 183..277
IPR045040PORR familyPANTHERPTHR31476PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTICcoord: 183..277
IPR045040PORR familyPANTHERPTHR31476PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTICcoord: 1..180

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005372.1Lag0005372.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding