Lag0005333 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005333
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDNA-directed RNA polymerases II and IV subunit 5A-like
Locationchr6: 14544421 .. 14545430 (+)
RNA-Seq ExpressionLag0005333
SyntenyLag0005333
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTTCCCCACAACCCCTCCTTATTTTTCTCCCTCCAACCACAAACCTCTGATGAACCAGCTTCGTGTGGTGGTGATAGTCACCTTCTCCATGGTGGCGGGAAGCGTGTTGAAGCGGCGTTTCGAATAGTTCAACGATCAATTCTATCAACACTCATGAAGACCCACAACAACACTATTCATCTAGTGTCTTTTTTCAACAACAATCCTCTTTTTAAAGAGCACAGTAAGTTTATGCATGCCACAACAGAGGAAGGCGTAAACAGAAACATTTGGGTTGAGAGAAGCTCAGAAACGAGAAACTCTTTCTTTCGAGGAATCAATTCAACAAGAATCTCCTTCTTAATCAGGTTTTTCCTATACCTTTTCTTAGAAGTTTGTAATACTCTTGTTTTTGGTCTGTGATTTCGTTGATATTTCTTTGATGGGTGTAGTTTTGTTCTTGTTGTTGCCTTGATTATGATTTAGGGTGGAATTTTCCCCTTCTAAATTAAATCAATACCCTCTGGAATGATTTATATAATCATTCCAAATATGAAATAACGAATGTATACTTCTTCTGTAAATTGATTTGTCTCAAACTCAATGTATGTGTCGAGTGTCTGTGATTTGGTGATTCCCTTTTATTTGGCTTTGAAATTTTCATATGTTGTAGGATCAATCGAATTGATGGAAATGTGGATGAATTTTACATTTCTTTTTCTTTTTTTTTCCTTTTTCCAATTTTTCCTTCTATTTTCCCCCTCATTTCGGTTTGAAATTGAGTTTTATACTGTTCTGTGTACTTCTTGCTGATATTAATGATTGAGTATTGAACTGCTTGAAAATGTGTGTAAGCTAAAAAAATGGTGTTGTCAGATCAGAAAATCACCAGACTCTTTAGAATTCGAAAAACTGTGATGCAGATGTTGAAAGACCAAGGCTGCTTTGTTGGAGACTTCAAGATCGACAAGGAAAGGAAGGGACCAAAATGGATGAACAAAGAAAAAAGGCAACAAGTGAGGTGA

mRNA sequence

ATGAGTTTTCCCCACAACCCCTCCTTATTTTTCTCCCTCCAACCACAAACCTCTGATGAACCAGCTTCGTGTGGTGGTGATAGTCACCTTCTCCATGGTGGCGGGAAGCGTGTTGAAGCGGCGTTTCGAATAGTTCAACGATCAATTCTATCAACACTCATGAAGACCCACAACAACACTATTCATCTAGTGTCTTTTTTCAACAACAATCCTCTTTTTAAAGAGCACAATCAGAAAATCACCAGACTCTTTAGAATTCGAAAAACTGTGATGCAGATGTTGAAAGACCAAGGCTGCTTTGTTGGAGACTTCAAGATCGACAAGGAAAGGAAGGGACCAAAATGGATGAACAAAGAAAAAAGGCAACAAGTGAGGTGA

Coding sequence (CDS)

ATGAGTTTTCCCCACAACCCCTCCTTATTTTTCTCCCTCCAACCACAAACCTCTGATGAACCAGCTTCGTGTGGTGGTGATAGTCACCTTCTCCATGGTGGCGGGAAGCGTGTTGAAGCGGCGTTTCGAATAGTTCAACGATCAATTCTATCAACACTCATGAAGACCCACAACAACACTATTCATCTAGTGTCTTTTTTCAACAACAATCCTCTTTTTAAAGAGCACAATCAGAAAATCACCAGACTCTTTAGAATTCGAAAAACTGTGATGCAGATGTTGAAAGACCAAGGCTGCTTTGTTGGAGACTTCAAGATCGACAAGGAAAGGAAGGGACCAAAATGGATGAACAAAGAAAAAAGGCAACAAGTGAGGTGA

Protein sequence

MSFPHNPSLFFSLQPQTSDEPASCGGDSHLLHGGGKRVEAAFRIVQRSILSTLMKTHNNTIHLVSFFNNNPLFKEHNQKITRLFRIRKTVMQMLKDQGCFVGDFKIDKERKGPKWMNKEKRQQVR
Homology
[Close]
BLAST of Lag0005333 vs. NCBI nr
Match: XP_022991826.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023547519.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.7 bits (130), Expect = 6.7e-04
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 78  QKITRLFRIRKTVMQMLKDQGCFVGDFKIDKERK 112
           ++ITRLFRIRKTV+QMLKD+G FVGDF+ID  R+
Sbjct: 6   EEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSRE 39

[Close]
BLAST of Lag0005333 vs. NCBI nr
Match: KAG7014568.1 (DNA-directed RNA polymerases II and IV subunit 5A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 54.7 bits (130), Expect = 6.7e-04
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 78  QKITRLFRIRKTVMQMLKDQGCFVGDFKIDKERK 112
           ++ITRLFRIRKTV+QMLKD+G FVGDF+ID  R+
Sbjct: 120 EEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSRE 153

The following BLAST results are available for this feature:
BLAST of Lag0005333 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022991826.16.7e-0473.53DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_02... [more]
KAG7014568.16.7e-0473.53DNA-directed RNA polymerases II and IV subunit 5A, partial [Cucurbita argyrosper... [more]
BLAST of Lag0005333 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005571RNA polymerase, Rpb5, N-terminalPFAMPF03871RNA_pol_Rpb5_Ncoord: 78..108
e-value: 3.8E-6
score: 27.4
IPR036710RNA polymerase Rpb5, N-terminal domain superfamilyGENE3D3.40.1340.10coord: 72..124
e-value: 1.3E-6
score: 30.5
IPR036710RNA polymerase Rpb5, N-terminal domain superfamilySUPERFAMILY53036Eukaryotic RPB5 N-terminal domaincoord: 78..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005333.1Lag0005333.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity