Lag0005281 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005281
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr6: 13335516 .. 13335911 (-)
RNA-Seq ExpressionLag0005281
SyntenyLag0005281
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTACCCAGACGAAATGGAAGATTGCTCTTTCATTAGAATTCTGGAGAACACAATTGTTGAGATAGCAATACTAGATTTGGCTGACAAACACTTGGAAGATCATGAAGAGGTTAGTGTAGAGGATTTAGAAGTTTGTTCTTTAGAAAGAAAAAATGAAACAGAAGTGTTTAGGTGTGAGGATGTTTTTGAATCTTTAGATTTAGATCAAAGGAAAGCTCTTCCTATTAAGCCATCCATGATTGAGGCACCCACTTTAGATTTGAAGCCCTTGCCGGATCATCTAAAGTATGTGTGTCGCAACGAGATCGCGACGCGGAGCGGTCGACATCCTCTTTTAAGGGTCTCTTGGAAAAGAGTTTTGGAGTCGCCACCAATCATATTAAGGGTGTGA

mRNA sequence

ATGAAGTACCCAGACGAAATGGAAGATTGCTCTTTCATTAGAATTCTGGAGAACACAATTGTTGAGATAGCAATACTAGATTTGGCTGACAAACACTTGGAAGATCATGAAGAGGTTAGTGTAGAGGATTTAGAAGTTTGTTCTTTAGAAAGAAAAAATGAAACAGAAGTGTTTAGGTGTGAGGATGTTTTTGAATCTTTAGATTTAGATCAAAGGAAAGCTCTTCCTATTAAGCCATCCATGATTGAGGCACCCACTTTAGATTTGAAGCCCTTGCCGGATCATCTAAAGTATGTGTGTCGCAACGAGATCGCGACGCGGAGCGGTCGACATCCTCTTTTAAGGGTCTCTTGGAAAAGAGTTTTGGAGTCGCCACCAATCATATTAAGGGTGTGA

Coding sequence (CDS)

ATGAAGTACCCAGACGAAATGGAAGATTGCTCTTTCATTAGAATTCTGGAGAACACAATTGTTGAGATAGCAATACTAGATTTGGCTGACAAACACTTGGAAGATCATGAAGAGGTTAGTGTAGAGGATTTAGAAGTTTGTTCTTTAGAAAGAAAAAATGAAACAGAAGTGTTTAGGTGTGAGGATGTTTTTGAATCTTTAGATTTAGATCAAAGGAAAGCTCTTCCTATTAAGCCATCCATGATTGAGGCACCCACTTTAGATTTGAAGCCCTTGCCGGATCATCTAAAGTATGTGTGTCGCAACGAGATCGCGACGCGGAGCGGTCGACATCCTCTTTTAAGGGTCTCTTGGAAAAGAGTTTTGGAGTCGCCACCAATCATATTAAGGGTGTGA

Protein sequence

MKYPDEMEDCSFIRILENTIVEIAILDLADKHLEDHEEVSVEDLEVCSLERKNETEVFRCEDVFESLDLDQRKALPIKPSMIEAPTLDLKPLPDHLKYVCRNEIATRSGRHPLLRVSWKRVLESPPIILRV
Homology
BLAST of Lag0005281 vs. NCBI nr
Match: XP_030504461.1 (uncharacterized protein LOC115719521 [Cannabis sativa])

HSP 1 Score: 65.1 bits (157), Expect = 5.2e-07
Identity = 48/141 (34.04%), Postives = 75/141 (53.19%), Query Frame = 0

Query: 1   MKYPDEMEDCSFIRILENTIVEIAILDLADKHLEDHEEV-SVEDLEVCSLERKNETEVFR 60
           M++PDE+E+CS + ++++ + E        K  +D   + S+EDLE  +L    ET+V  
Sbjct: 142 MRFPDEIEECSRLSVIDSIVAE----SFHKKVWKDERVISSLEDLE--ALSEDEETQVSW 201

Query: 61  CEDV---------FESLDLDQRKALPIKPSMIEAPTLDLKPLPDHLKYVCRNEIATRSGR 120
            E +         FESL+L +    P+KPS+ E P L+LKPLP HLKY    E  T    
Sbjct: 202 VEPMQPFPKFKRAFESLELKESNFKPLKPSIQEPPKLELKPLPSHLKYAYLGENETL--- 261

Query: 121 HPLLRVSWKRVLESPPIILRV 132
            P++  +W    E+  ++L V
Sbjct: 262 -PVIISAWLEA-ETEGLLLEV 271

BLAST of Lag0005281 vs. NCBI nr
Match: XP_030485610.1 (uncharacterized protein LOC115702304 [Cannabis sativa])

HSP 1 Score: 58.9 bits (141), Expect = 3.7e-05
Identity = 41/113 (36.28%), Postives = 61/113 (53.98%), Query Frame = 0

Query: 1   MKYPDEMEDCSFIRILENTIVEIAILDLADKHLEDHEEV-SVEDLEVCSLERKNETEVFR 60
           M++ DE+E+CS + ++++ + E        K  +D   + S+EDLE  +L    ET+V  
Sbjct: 174 MRFQDEIEECSRLSVIDSIVAE----SFHKKVWKDERVISSLEDLE--ALSEDEETQVAW 233

Query: 61  CEDV---------FESLDLDQRKALPIKPSMIEAPTLDLKPLPDHLKYVCRNE 104
            E +         FESL+L +    P KPS+ E P L+LKPLP HLKY    E
Sbjct: 234 VEPMQPSPKFKRSFESLELKESNFKPPKPSIQEPPKLELKPLPSHLKYAYLGE 280

BLAST of Lag0005281 vs. NCBI nr
Match: KAG8501049.1 (hypothetical protein CXB51_003148 [Gossypium anomalum])

HSP 1 Score: 58.9 bits (141), Expect = 3.7e-05
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 0

Query: 1   MKYPDEMEDCSFIRILENTIVE---IAILDLADKHLEDHEEVSVEDLEVCSLERKNETEV 60
           M++PD ++DCS +  LE+ IVE    ++ DL ++ L        E+ E  +L   N+ + 
Sbjct: 510 MQFPDAIDDCSVVSDLEDLIVEKELNSVEDLLERILTLDPPSDEEEDENLALLEANQ-KG 569

Query: 61  FRCEDVFESLDLDQRKALPIKPSMIEAPTLDLKPLPDHLKYVCRNEIAT 107
           F  +  FESLDL++R     K S+ E P L+LK LP HLKYV     +T
Sbjct: 570 FNPQSRFESLDLEERDYTQPKASIEEPPKLELKVLPSHLKYVYLGNAST 617

BLAST of Lag0005281 vs. NCBI nr
Match: XP_016464122.1 (PREDICTED: uncharacterized protein LOC107787110 [Nicotiana tabacum])

HSP 1 Score: 57.8 bits (138), Expect = 8.3e-05
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 0

Query: 1   MKYPDEMEDCSFIR----ILENTIVEIAILDLADKHLEDHEEVSVEDLE--VCSLERKNE 60
           M+ P E  +CS +     I++   + + + D  +  L + EE+  E L   V +LE +  
Sbjct: 243 MRRPSEYANCSLVEAVDVIMQEDDMTLIVKDQLEACLTNLEEMYGEGLTEWVMALEGRG- 302

Query: 61  TEVFRCEDVFESLDLDQRKALPIKPSMIEAPTLDLKPLPDHLKYV 100
              +  E  FESL+L++R   P KPS+ E P L+LKPLPDHL+YV
Sbjct: 303 --FWSREPQFESLELEKRATPPAKPSIEEPPKLELKPLPDHLRYV 344

BLAST of Lag0005281 vs. NCBI nr
Match: XP_024017688.1 (uncharacterized protein K02A2.6-like [Morus notabilis])

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-04
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = 0

Query: 1   MKYPDEMEDCSFIRILENTIVEIAILDLADKHLEDHEEVSVEDLEVCSLERKNETEVFRC 60
           M++P EME+CS I ++++ + E     L   + E + E  VE +E+        +   + 
Sbjct: 16  MRFPSEMEECSAISVIDSLVAE----TLEHDNFESNVEGGVEQVELVGAHVTMPSYTRK- 75

Query: 61  EDVFESLDLDQRKALPIKPSMIEAPTLDLKPLPDHLKYVCRNEIAT 107
              FESLDL +R+  P +P   E P L LKPLP HL+Y    + +T
Sbjct: 76  ---FESLDLIEREHQPTQPLSKEPPILKLKPLPAHLRYAYLGDSST 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030504461.15.2e-0734.04uncharacterized protein LOC115719521 [Cannabis sativa][more]
XP_030485610.13.7e-0536.28uncharacterized protein LOC115702304 [Cannabis sativa][more]
KAG8501049.13.7e-0537.61hypothetical protein CXB51_003148 [Gossypium anomalum][more]
XP_016464122.18.3e-0537.14PREDICTED: uncharacterized protein LOC107787110 [Nicotiana tabacum][more]
XP_024017688.11.1e-0433.96uncharacterized protein K02A2.6-like [Morus notabilis][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005281.1Lag0005281.1mRNA