Lag0005249 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005249
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTryptophan aminotransferase-related protein 1
Locationchr6: 12671507 .. 12671825 (-)
RNA-Seq ExpressionLag0005249
SyntenyLag0005249
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGCCAGTTCTGCTTTTTCCTTGGGCATTCCTCACAACCATATCCTGGTACGGGTCCGACATTTAAATTCCACTTTGTTAATTTGTCCGAGTTGAAGTTGTTGATGTTTTGATTTGAACAGCTTTTGTTTGGTTGAAGTGCAAAGAGGAGATAGAGGGTTGGTGGAGCTTTCTGAGAGGGTATAAGATAGAGGGGCGAAATGGGAGGAGTTTTGGAGCTGATGCCAAGTATTTGAGAATCAGCATGTTAAGTAGCGATGATGTTTTTGAGGATTTCTTGGACAGGCTCTCCGCCATCCAAATGTTTGAACAGTGA

mRNA sequence

ATGAGAGCCAGTTCTGCTTTTTCCTTGGGCATTCCTCACAACCATATCCTGTGCAAAGAGGAGATAGAGGGTTGGTGGAGCTTTCTGAGAGGGTATAAGATAGAGGGGCGAAATGGGAGGAGTTTTGGAGCTGATGCCAAGTATTTGAGAATCAGCATGTTAAGTAGCGATGATGTTTTTGAGGATTTCTTGGACAGGCTCTCCGCCATCCAAATGTTTGAACAGTGA

Coding sequence (CDS)

ATGAGAGCCAGTTCTGCTTTTTCCTTGGGCATTCCTCACAACCATATCCTGTGCAAAGAGGAGATAGAGGGTTGGTGGAGCTTTCTGAGAGGGTATAAGATAGAGGGGCGAAATGGGAGGAGTTTTGGAGCTGATGCCAAGTATTTGAGAATCAGCATGTTAAGTAGCGATGATGTTTTTGAGGATTTCTTGGACAGGCTCTCCGCCATCCAAATGTTTGAACAGTGA

Protein sequence

MRASSAFSLGIPHNHILCKEEIEGWWSFLRGYKIEGRNGRSFGADAKYLRISMLSSDDVFEDFLDRLSAIQMFEQ
Homology
BLAST of Lag0005249 vs. NCBI nr
Match: XP_038885813.1 (L-tryptophan--pyruvate aminotransferase 1-like [Benincasa hispida])

HSP 1 Score: 97.1 bits (240), Expect = 7.1e-17
Identity = 48/58 (82.76%), Postives = 51/58 (87.93%), Query Frame = 0

Query: 18  CKEEIEGWWSFLRGYKIEGRNGRSFGADAKYLRISMLSSDDVFEDFLDRLSAIQMFEQ 76
           CKEEIE   SFLRGY IEGR+G+ FGADAKYLRISMLSSDDVF DFLDRLSAIQ F+Q
Sbjct: 333 CKEEIEDCGSFLRGYNIEGRHGKRFGADAKYLRISMLSSDDVFYDFLDRLSAIQTFQQ 390

BLAST of Lag0005249 vs. NCBI nr
Match: XP_023002852.1 (L-tryptophan--pyruvate aminotransferase 1-like [Cucurbita maxima])

HSP 1 Score: 87.8 bits (216), Expect = 4.3e-14
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 0

Query: 18  CKEEIEGWWSFLRGYKIEGRNGRSFGADAKYLRISMLSSDDVFEDFLDRLSAIQMFEQ 76
           C EE E   S LR Y I GRNG+ FGADAKYLRISMLSSDDVFEDFLDRL+AI++FE+
Sbjct: 334 CNEETEDCGSLLRRYNILGRNGKRFGADAKYLRISMLSSDDVFEDFLDRLNAIRLFEE 391

BLAST of Lag0005249 vs. NCBI nr
Match: XP_022131455.1 (L-tryptophan--pyruvate aminotransferase 1-like isoform X2 [Momordica charantia])

HSP 1 Score: 87.0 bits (214), Expect = 7.3e-14
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 18  CKEEIEGWWSFLRGYKIEGRNGRSFGADAKYLRISMLSSDDVFEDFLDRLSAIQM 73
           CKEEIE   SFLR +KIEGR+GR FGADAKYLRISMLSSDDVF+ FL+RLSAI++
Sbjct: 352 CKEEIEDCGSFLREHKIEGRSGRRFGADAKYLRISMLSSDDVFQQFLERLSAIKI 406

BLAST of Lag0005249 vs. NCBI nr
Match: XP_022131454.1 (L-tryptophan--pyruvate aminotransferase 1-like isoform X1 [Momordica charantia])

HSP 1 Score: 87.0 bits (214), Expect = 7.3e-14
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 18  CKEEIEGWWSFLRGYKIEGRNGRSFGADAKYLRISMLSSDDVFEDFLDRLSAIQM 73
           CKEEIE   SFLR +KIEGR+GR FGADAKYLRISMLSSDDVF+ FL+RLSAI++
Sbjct: 367 CKEEIEDCGSFLREHKIEGRSGRRFGADAKYLRISMLSSDDVFQQFLERLSAIKI 421

BLAST of Lag0005249 vs. NCBI nr
Match: XP_023538054.1 (L-tryptophan--pyruvate aminotransferase 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.0 bits (214), Expect = 7.3e-14
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 0

Query: 18  CKEEIEGWWSFLRGYKIEGRNGRSFGADAKYLRISMLSSDDVFEDFLDRLSAIQMFEQ 76
           C EE E   S LR Y I GRNG+ FGADAKYLR+SMLSSDDVFEDFLDRL+AI++FE+
Sbjct: 334 CNEETEDCGSLLRRYNILGRNGKRFGADAKYLRLSMLSSDDVFEDFLDRLNAIRLFEE 391

BLAST of Lag0005249 vs. ExPASy Swiss-Prot
Match: Q5VQG8 (Tryptophan aminotransferase-related protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TAR2 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.3e-09
Identity = 27/53 (50.94%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 19  KEEIEGWWSFLRGYKIEGRNGRSFGADAKYLRISMLSSDDVFEDFLDRLSAIQ 72
           +E++E    FLRG+KI  R+G  FGADA+Y+R+SML  DD F+ F++RLS+++
Sbjct: 455 REDVEDCAGFLRGHKILTRSGAQFGADARYVRVSMLDRDDAFDIFINRLSSLK 507

BLAST of Lag0005249 vs. ExPASy Swiss-Prot
Match: Q0DKE8 (Tryptophan aminotransferase-related protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=TAR1 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.9e-05
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 19  KEEIEGWWSFLRGYKIEGRNGRSFGADAKYLRISMLSSDDVFEDFLDRLSAI 71
           KE ++    +LR  KI  R G  FGAD + +RISML +D+ F  F+DRL+A+
Sbjct: 389 KEGVDDLEGYLRERKIISRGGGKFGADGRVVRISMLDTDEAFAIFVDRLAAM 440

BLAST of Lag0005249 vs. ExPASy Swiss-Prot
Match: Q9S7N2 (L-tryptophan--pyruvate aminotransferase 1 OS=Arabidopsis thaliana OX=3702 GN=TAA1 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.2e-04
Identity = 21/48 (43.75%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 27  SFLRGYKIEGRNGRSFGADAKYLRISMLSSDDVFEDFLDRLSAIQMFE 75
           S LR +K+  R G   G+D K++R+SMLS +DVF  FL+RL+ +++ +
Sbjct: 340 SELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLANMKLIK 387

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038885813.17.1e-1782.76L-tryptophan--pyruvate aminotransferase 1-like [Benincasa hispida][more]
XP_023002852.14.3e-1474.14L-tryptophan--pyruvate aminotransferase 1-like [Cucurbita maxima][more]
XP_022131455.17.3e-1478.18L-tryptophan--pyruvate aminotransferase 1-like isoform X2 [Momordica charantia][more]
XP_022131454.17.3e-1478.18L-tryptophan--pyruvate aminotransferase 1-like isoform X1 [Momordica charantia][more]
XP_023538054.17.3e-1472.41L-tryptophan--pyruvate aminotransferase 1-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Q5VQG84.3e-0950.94Tryptophan aminotransferase-related protein 2 OS=Oryza sativa subsp. japonica OX... [more]
Q0DKE82.9e-0546.15Tryptophan aminotransferase-related protein 1 OS=Oryza sativa subsp. japonica OX... [more]
Q9S7N23.2e-0443.75L-tryptophan--pyruvate aminotransferase 1 OS=Arabidopsis thaliana OX=3702 GN=TAA... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006948Alliinase, C-terminalPFAMPF04864Alliinase_Ccoord: 18..70
e-value: 2.4E-9
score: 36.5
IPR015422Pyridoxal phosphate-dependent transferase, small domainGENE3D3.90.1150.10Aspartate Aminotransferase, domain 1coord: 5..75
e-value: 4.8E-13
score: 50.7
IPR015424Pyridoxal phosphate-dependent transferaseSUPERFAMILY53383PLP-dependent transferasescoord: 20..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005249.1Lag0005249.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009851 auxin biosynthetic process
biological_process GO:0006520 cellular amino acid metabolic process
molecular_function GO:0016846 carbon-sulfur lyase activity
molecular_function GO:0008483 transaminase activity
molecular_function GO:0003824 catalytic activity