Lag0005170 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005170
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNase H domain-containing protein
Locationchr6: 11434888 .. 11435324 (+)
RNA-Seq ExpressionLag0005170
SyntenyLag0005170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTGAATTCAGACACCTCGTGGAGCATCTTGGAAGGAATTAGTGGGCTAGGGTGGACAGTTCGTGACTCCTGTAGGTCTTTGATCATTGCTAGAAGTAAGAAAATAAAAAAAAACTGGTCGATTCTATCTTTGGAAGCCATGGCTATGATAGAGGTTTAACAAATTACCTCAATCACGACAAATGTAGATCTCTCCCCCTCATCGTGGAGTCTAATTCGACAAGGCTGATCAAGCTACTTCAGGGGAAGGACGTCGATCTCTCTGAAGCAAGAAACATCTTGGACGACATCGAGAATCTGGCGAGAGAAGCGATTAACACCTCTTTTTCATGGTGGCCGAGGTCATGCAATCGAGCAGCAAACTTCTTAGCTCAAAATGCAAGAAATTACAGTTCGACAGAACCTCATTTGAGAGGAATTTCGTTGGATTAG

mRNA sequence

ATGAAGTTGAATTCAGACACCTCGTGGAGCATCTTGGAAGGAATTAGTGGGCTAGGGTGGACAGTTCGTGACTCCTGTAGATCTCTCCCCCTCATCGTGGAGTCTAATTCGACAAGGCTGATCAAGCTACTTCAGGGGAAGGACGTCGATCTCTCTGAAGCAAGAAACATCTTGGACGACATCGAGAATCTGGCGAGAGAAGCGATTAACACCTCTTTTTCATGGTGGCCGAGGTCATGCAATCGAGCAGCAAACTTCTTAGCTCAAAATGCAAGAAATTACAGTTCGACAGAACCTCATTTGAGAGGAATTTCGTTGGATTAG

Coding sequence (CDS)

ATGAAGTTGAATTCAGACACCTCGTGGAGCATCTTGGAAGGAATTAGTGGGCTAGGGTGGACAGTTCGTGACTCCTGTAGATCTCTCCCCCTCATCGTGGAGTCTAATTCGACAAGGCTGATCAAGCTACTTCAGGGGAAGGACGTCGATCTCTCTGAAGCAAGAAACATCTTGGACGACATCGAGAATCTGGCGAGAGAAGCGATTAACACCTCTTTTTCATGGTGGCCGAGGTCATGCAATCGAGCAGCAAACTTCTTAGCTCAAAATGCAAGAAATTACAGTTCGACAGAACCTCATTTGAGAGGAATTTCGTTGGATTAG

Protein sequence

MKLNSDTSWSILEGISGLGWTVRDSCRSLPLIVESNSTRLIKLLQGKDVDLSEARNILDDIENLAREAINTSFSWWPRSCNRAANFLAQNARNYSSTEPHLRGISLD
Homology
The following BLAST results are available for this feature:
BLAST of Lag0005170 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0005170 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 51..71
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 30..91
e-value: 1.7E-9
score: 37.5
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 2..97
e-value: 6.0E-5
score: 25.0
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 3..88
e-value: 3.7902E-11
score: 53.472

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005170.1Lag0005170.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity