Lag0005104 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005104
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTranscription elongation factor B polypeptide 3 isoform X2
Locationchr6: 10738977 .. 10739981 (+)
RNA-Seq ExpressionLag0005104
SyntenyLag0005104
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCGTCCAAAGAAGGTGAACAACGACTTTCACCTTCGAAAGAATGCGACCGGGAGGAAAGTGGTGTTGGAGGAAAGGAAGGGAGCGAAAGTGAGGCGAATGGATCTAGATTTGGGAACGTTCGCGTGGGTTAGGGACTGCCTTATGGCCATTTCGAAGGCAAAAAACCCAATGGGATTTTGGAGAAGAAGAAGGCTAGATGCTGCAGTAATTTTCTTTCAGGTGCTGAGGAATTCAAAAGGAAGATATGGCCTGATATCCATGGAACCCTTTCGTGGGTAGAAAACCTCGATCTTTATTCCAGAAGGATCTAACTCGAAGGGATGGGGAGCTTTGGAAGCGTCGATGACGGGTCTTCTTCCTCCCGTGAAGCCGACGAACCAGAAAAGAAATCAAGAAAGAAGGATCACGAGCAACATAGGTAGCAAGATCAACACCTCAAAATCGTTTGCAGAGGCAGTGAAGGAGGGCCCGAGTCGGATACTTGAAGAGGATTTGAAATATTCAGAAGACGTCAGCTTTGCCTTCGATTGCACGGAAGCGGTGATTGTAGAGAGAACCTCCATTAACTCGAGTTGGGGAGATATCAAGGAAGCGTGCTTGAGGTTAGTTAACATTGGCCTATCTCTACAACCTTTCTGTGCTAACATGGCAGTGGGTCTATGTGGAAGCGATAAGGAAGCTAAAGATTTGATTCGGATGGGCTCTGCTGTGAAACCTGATTTTTTCTCAGTCCACGAGTGGGATTTTAAGGTGATAGCTGAAAGAAAATGCCAAAATTTCAACGGTGGATGGATTACGACCCTGGATGTCCCACCATTTTTTAGAACCAAACAGATGATTTCCAATCTTGCAGGCATGTGCGGGGGATTGGAGGAAGAAGAAAGATTTTCGGTGAGAATTGCTGAACCGATGAAATATGCTTCAAAGTCAAGAGGAATGATAGCGGTTTCATTCCCACGTCGTGCTACGTTAATCACGAGAAGACGTACTTTCCGGTGA

mRNA sequence

ATGAACCGTCCAAAGAAGGTGAACAACGACTTTCACCTTCGAAAGAATGCGACCGGGAGGAAAGTGGTGTTGGAGGAAAGGAAGGGAGCGAAAGTGAGGCGAATGGATCTAGATTTGGGAACGTTCGCGTGGGTTAGGGACTGCCTTATGGCCATTTCGAAGGCAAAAAACCCAATGGGATTTTGGAGAAGAAGAAGGCTAGATGCTGCAGTAATTTTCTTTCAGAAAACCTCGATCTTTATTCCAGAAGGATCTAACTCGAAGGGATGGGGAGCTTTGGAAGCGTCGATGACGGGTCTTCTTCCTCCCGTGAAGCCGACGAACCAGAAAAGAAATCAAGAAAGAAGGATCACGAGCAACATAGGTAGCAAGATCAACACCTCAAAATCGTTTGCAGAGGCAGTGAAGGAGGGCCCGAGTCGGATACTTGAAGAGGATTTGAAATATTCAGAAGACGTCAGCTTTGCCTTCGATTGCACGGAAGCGGTGATTGTAGAGAGAACCTCCATTAACTCGAGTTGGGGAGATATCAAGGAAGCGTGCTTGAGGTTAGTTAACATTGGCCTATCTCTACAACCTTTCTGTGCTAACATGGCAGTGGGTCTATGTGGAAGCGATAAGGAAGCTAAAGATTTGATTCGGATGGGCTCTGCTGTGAAACCTGATTTTTTCTCAGTCCACGAGTGGGATTTTAAGGTGATAGCTGAAAGAAAATGCCAAAATTTCAACGGTGGATGGATTACGACCCTGGATGTCCCACCATTTTTTAGAACCAAACAGATGATTTCCAATCTTGCAGGCATGTGCGGGGGATTGGAGGAAGAAGAAAGATTTTCGGTGAGAATTGCTGAACCGATGAAATATGCTTCAAAGTCAAGAGGAATGATAGCGGTTTCATTCCCACGTCGTGCTACGTTAATCACGAGAAGACGTACTTTCCGGTGA

Coding sequence (CDS)

ATGAACCGTCCAAAGAAGGTGAACAACGACTTTCACCTTCGAAAGAATGCGACCGGGAGGAAAGTGGTGTTGGAGGAAAGGAAGGGAGCGAAAGTGAGGCGAATGGATCTAGATTTGGGAACGTTCGCGTGGGTTAGGGACTGCCTTATGGCCATTTCGAAGGCAAAAAACCCAATGGGATTTTGGAGAAGAAGAAGGCTAGATGCTGCAGTAATTTTCTTTCAGAAAACCTCGATCTTTATTCCAGAAGGATCTAACTCGAAGGGATGGGGAGCTTTGGAAGCGTCGATGACGGGTCTTCTTCCTCCCGTGAAGCCGACGAACCAGAAAAGAAATCAAGAAAGAAGGATCACGAGCAACATAGGTAGCAAGATCAACACCTCAAAATCGTTTGCAGAGGCAGTGAAGGAGGGCCCGAGTCGGATACTTGAAGAGGATTTGAAATATTCAGAAGACGTCAGCTTTGCCTTCGATTGCACGGAAGCGGTGATTGTAGAGAGAACCTCCATTAACTCGAGTTGGGGAGATATCAAGGAAGCGTGCTTGAGGTTAGTTAACATTGGCCTATCTCTACAACCTTTCTGTGCTAACATGGCAGTGGGTCTATGTGGAAGCGATAAGGAAGCTAAAGATTTGATTCGGATGGGCTCTGCTGTGAAACCTGATTTTTTCTCAGTCCACGAGTGGGATTTTAAGGTGATAGCTGAAAGAAAATGCCAAAATTTCAACGGTGGATGGATTACGACCCTGGATGTCCCACCATTTTTTAGAACCAAACAGATGATTTCCAATCTTGCAGGCATGTGCGGGGGATTGGAGGAAGAAGAAAGATTTTCGGTGAGAATTGCTGAACCGATGAAATATGCTTCAAAGTCAAGAGGAATGATAGCGGTTTCATTCCCACGTCGTGCTACGTTAATCACGAGAAGACGTACTTTCCGGTGA

Protein sequence

MNRPKKVNNDFHLRKNATGRKVVLEERKGAKVRRMDLDLGTFAWVRDCLMAISKAKNPMGFWRRRRLDAAVIFFQKTSIFIPEGSNSKGWGALEASMTGLLPPVKPTNQKRNQERRITSNIGSKINTSKSFAEAVKEGPSRILEEDLKYSEDVSFAFDCTEAVIVERTSINSSWGDIKEACLRLVNIGLSLQPFCANMAVGLCGSDKEAKDLIRMGSAVKPDFFSVHEWDFKVIAERKCQNFNGGWITTLDVPPFFRTKQMISNLAGMCGGLEEEERFSVRIAEPMKYASKSRGMIAVSFPRRATLITRRRTFR
Homology
BLAST of Lag0005104 vs. NCBI nr
Match: TYK14183.1 (hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 5.4e-26
Identity = 83/236 (35.17%), Postives = 119/236 (50.42%), Query Frame = 0

Query: 1   MNRPKKVNNDFHLRKNATGRKVVLEERKGAKVRRMDLDLGTFAWVRDCLMAISKAKNPMG 60
           M + K    +F +      RK+ +EER G    +++LD GT AWVRDCL+  + A N M 
Sbjct: 1   MGKLKIDRKEFLVGFMVKARKIYIEERNGRIFGKLELDFGTSAWVRDCLVGAAGANNSMV 60

Query: 61  FWRRRRLDAAVIFFQ--------------------KTSIFIPEGSNSKGWGALEASMTGL 120
           FW +RRL+ A+IFFQ                    KT IFIPEGS   GW +L   ++ L
Sbjct: 61  FW-QRRLEFAIIFFQVLENEKGRFAILSLESFKERKTRIFIPEGSRGSGWRSLAGEISAL 120

Query: 121 LPPVKPTNQKRNQERRITSNIGSKINTSKSFAEAVKEGPSRILEEDLKYSEDVSFAFDCT 180
           LP     NQK           GS    +K+  EA K     +     +  +DV FAF+  
Sbjct: 121 LPWSGTINQK----------TGSMSQPAKN-REAFKGLGKMVRRRTDESGKDVEFAFEWK 180

Query: 181 EAVIVERTSINSSWGDIKEACLRLVNIGLSLQPFCANMAVGLCGSDKEAKDLIRMG 217
             VI+++   +S WG +K+   +   I  + + FCAN+AVG+ GSD EAK+ + +G
Sbjct: 181 STVIIKKLRASSDWGALKQLLEQPPVICCNFKNFCANLAVGIGGSDSEAKNSLGLG 224

BLAST of Lag0005104 vs. NCBI nr
Match: KAA0054521.1 (transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 2.0e-12
Identity = 57/170 (33.53%), Postives = 82/170 (48.24%), Query Frame = 0

Query: 6   KVNNDFHLRKNATGRKVVLEERKGAKVRRMDLDLGTFAWVRDCLMAISKAKNPMGFWRRR 65
           K N   H R +  GRK+ +EER G + R+++L+LGT AWVRDCL+A ++  NP+ FWRRR
Sbjct: 125 KENARIHGRSSECGRKICIEERNGERSRKLELELGTSAWVRDCLVAAAELSNPLVFWRRR 184

Query: 66  RLDAAVIFFQKTSIFIPEGSNSKGWGALEASMTGLLPPVKPTNQKRNQERRITSNIGSK- 125
            L+        T + IP+G N  G   L A                  E  +    GS+ 
Sbjct: 185 WLE--------TRVLIPDGKNGSGRRPLAA------------------EASLEGRAGSEG 244

Query: 126 -INTSKSFAEAVKEGPSRI----LEEDLKYSEDVSFAFDCTEAVIVERTS 170
            + + K     VK   S++      ED K+  D+    DC   VI++ TS
Sbjct: 245 SLKSGKELDAVVKADCSKVESEGSPEDKKWEFDL--RSDCEATVIIKMTS 266

BLAST of Lag0005104 vs. NCBI nr
Match: KAE8646271.1 (hypothetical protein Csa_023831, partial [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-04
Identity = 32/88 (36.36%), Postives = 46/88 (52.27%), Query Frame = 0

Query: 136 KEGPSRILEEDLK-----YSEDVSFAFDCTEAVIVERTSINSSWGDIKEACLRLVNIGLS 195
           K  P   LEE++K         + F F C   +I+++      WG +K+   +   I   
Sbjct: 66  KCSPLSRLEEEVKAVKADRDNVMDFVFVCHSTIIIKKLKALIDWGVLKQLFEKPSYISCG 125

Query: 196 LQPFCANMAVGLCGSDKEAKDLIRMGSA 219
              FCAN+AVG+C S  EAKDLIR+GS+
Sbjct: 126 FNIFCANLAVGICDSVSEAKDLIRLGSS 153

BLAST of Lag0005104 vs. NCBI nr
Match: KAE8648463.1 (hypothetical protein Csa_023678, partial [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-04
Identity = 32/86 (37.21%), Postives = 44/86 (51.16%), Query Frame = 0

Query: 186 NIGLSLQPFCANMAVGLCGSDKEAKDLIRMGSAVKPDFFSVHEWDFKVIAERKCQNFNGG 245
           N GL  +  C ++ +   G   ++  +I    A K  FF V  WDF+VI  ++ Q F GG
Sbjct: 37  NRGLLHKSGCGDLWLSFRGEGVDSTRVI----ASKSRFF-VSTWDFRVIEGQRKQEFRGG 96

Query: 246 WITTLDVPPFFRTKQMISNLAGMCGG 272
            +  LDVPPFF  K    +L   CGG
Sbjct: 97  SVAALDVPPFFENKGDNPSLVSWCGG 117

BLAST of Lag0005104 vs. ExPASy TrEMBL
Match: A0A5D3CQQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold8046G00070 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.6e-26
Identity = 83/236 (35.17%), Postives = 119/236 (50.42%), Query Frame = 0

Query: 1   MNRPKKVNNDFHLRKNATGRKVVLEERKGAKVRRMDLDLGTFAWVRDCLMAISKAKNPMG 60
           M + K    +F +      RK+ +EER G    +++LD GT AWVRDCL+  + A N M 
Sbjct: 1   MGKLKIDRKEFLVGFMVKARKIYIEERNGRIFGKLELDFGTSAWVRDCLVGAAGANNSMV 60

Query: 61  FWRRRRLDAAVIFFQ--------------------KTSIFIPEGSNSKGWGALEASMTGL 120
           FW +RRL+ A+IFFQ                    KT IFIPEGS   GW +L   ++ L
Sbjct: 61  FW-QRRLEFAIIFFQVLENEKGRFAILSLESFKERKTRIFIPEGSRGSGWRSLAGEISAL 120

Query: 121 LPPVKPTNQKRNQERRITSNIGSKINTSKSFAEAVKEGPSRILEEDLKYSEDVSFAFDCT 180
           LP     NQK           GS    +K+  EA K     +     +  +DV FAF+  
Sbjct: 121 LPWSGTINQK----------TGSMSQPAKN-REAFKGLGKMVRRRTDESGKDVEFAFEWK 180

Query: 181 EAVIVERTSINSSWGDIKEACLRLVNIGLSLQPFCANMAVGLCGSDKEAKDLIRMG 217
             VI+++   +S WG +K+   +   I  + + FCAN+AVG+ GSD EAK+ + +G
Sbjct: 181 STVIIKKLRASSDWGALKQLLEQPPVICCNFKNFCANLAVGIGGSDSEAKNSLGLG 224

BLAST of Lag0005104 vs. ExPASy TrEMBL
Match: A0A5A7ULV4 (Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003030 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.6e-13
Identity = 57/170 (33.53%), Postives = 82/170 (48.24%), Query Frame = 0

Query: 6   KVNNDFHLRKNATGRKVVLEERKGAKVRRMDLDLGTFAWVRDCLMAISKAKNPMGFWRRR 65
           K N   H R +  GRK+ +EER G + R+++L+LGT AWVRDCL+A ++  NP+ FWRRR
Sbjct: 125 KENARIHGRSSECGRKICIEERNGERSRKLELELGTSAWVRDCLVAAAELSNPLVFWRRR 184

Query: 66  RLDAAVIFFQKTSIFIPEGSNSKGWGALEASMTGLLPPVKPTNQKRNQERRITSNIGSK- 125
            L+        T + IP+G N  G   L A                  E  +    GS+ 
Sbjct: 185 WLE--------TRVLIPDGKNGSGRRPLAA------------------EASLEGRAGSEG 244

Query: 126 -INTSKSFAEAVKEGPSRI----LEEDLKYSEDVSFAFDCTEAVIVERTS 170
            + + K     VK   S++      ED K+  D+    DC   VI++ TS
Sbjct: 245 SLKSGKELDAVVKADCSKVESEGSPEDKKWEFDL--RSDCEATVIIKMTS 266

BLAST of Lag0005104 vs. ExPASy TrEMBL
Match: A0A0A0LY03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G673520 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.5e-10
Identity = 38/96 (39.58%), Postives = 50/96 (52.08%), Query Frame = 0

Query: 18 TGRKVVLEERKGAKVRRMDLDLGTFAWVRDCLMAISKAKNPMGFWRRRRLDAAVIFFQ-- 77
          + RK+ +EER G K  ++DLDLGT  WV D L A + A   MG W+R++LD  +IFFQ  
Sbjct: 4  SNRKIYIEERNGRKCGKLDLDLGTLTWVEDRLNAAADASFSMGSWQRKKLDFGIIFFQVL 63

Query: 78 ------------------KTSIFIPEGSNSKGWGAL 94
                            K  +FI EGS   GW +L
Sbjct: 64 ENIGRRFTIISLDSFKGRKARVFISEGSRESGWRSL 99

BLAST of Lag0005104 vs. ExPASy TrEMBL
Match: A0A0A0KGZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169320 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.1e-08
Identity = 31/65 (47.69%), Postives = 46/65 (70.77%), Query Frame = 0

Query: 12  HLRKNA-TGRKVVLEERKGAKVRRMDLDLGTFAWVRDCLMAISKAKNPMGFWRRRRLDAA 71
           +L++NA  GRK+ +EE  G +  +++L+LG  AWV DCL+A ++  NP+GFW RR L+  
Sbjct: 123 YLKENAQCGRKICIEEGNGERFGKLELELGASAWVIDCLVAAAELSNPLGFWWRRWLERT 182

Query: 72  VIFFQ 76
            IFFQ
Sbjct: 183 NIFFQ 187

BLAST of Lag0005104 vs. ExPASy TrEMBL
Match: A0A0A0KB99 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G136570 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.4e-05
Identity = 35/87 (40.23%), Postives = 42/87 (48.28%), Query Frame = 0

Query: 35  MDLDLGTFAWVRDCLMAISKAKNPMGFWRRRRLDAAVIFFQ------------------- 94
           M+LD GT A VRDCL   + A NP  FW RR L  A+IFFQ                   
Sbjct: 1   MELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKG 60

Query: 95  -KTSIFIPEGSNSKGWGALEASMTGLL 102
            KT IFI +GS  KG  +    ++ LL
Sbjct: 61  KKTRIFISKGSKGKGRKSFAEEISVLL 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK14183.15.4e-2635.17hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa][more]
KAA0054521.12.0e-1233.53transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. ma... [more]
KAE8646271.11.2e-0436.36hypothetical protein Csa_023831, partial [Cucumis sativus][more]
KAE8648463.12.0e-0437.21hypothetical protein Csa_023678, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CQQ02.6e-2635.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7ULV49.6e-1333.53Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. ... [more]
A0A0A0LY034.5e-1039.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G673520 PE=4 SV=1[more]
A0A0A0KGZ57.1e-0847.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169320 PE=4 SV=1[more]
A0A0A0KB997.4e-0540.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G136570 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005104.1Lag0005104.1mRNA