Lag0005025 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005025
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionEpidermal patterning factor-like protein
Locationchr6: 9680481 .. 9680968 (-)
RNA-Seq ExpressionLag0005025
SyntenyLag0005025
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAGCCTTCAAATTTGGCACAGAAACAAACACCTTTCAATTTCCTTGCTGTTCTTCTTCCTCCTCTCTGTTTCCATCTTCATTCATGTCACATCCATAGCTGAAGGTAATTAAGCTCTGTCTCTAATTTCCCACCTCAAATTTTGCTCCTTTTGTAAAGATTTCTCCTTGATGCAGGGAGAGGTATTCTGATGGAGGAGGGAGAAAGGAGGTCGCCGGAGCTGGCGGAGGAGGTGGGGATGGTGAGGAGTCAAATAGGGTCACGGCCGCCGAGCTGCCGGAGAAGGTGCAGGGAATGTGGAGGGCGTTGTGAGGCAGTTCAAGTACCAGTGGCGCTGCATGATTCATCACATCAGAATCAAAGGAAAAGAAGAAGAAGCAGCCATTTCTCTGCTGCTGTGGCTCTGTCTAGTGAAGATGAGACCTCAAATTACAAGCCAATAAGCTGGAAATGTAAATGTGGGAACTTTATCTTCAACCCATGA

mRNA sequence

ATGGGCAGCCTTCAAATTTGGCACAGAAACAAACACCTTTCAATTTCCTTGCTGTTCTTCTTCCTCCTCTCTGTTTCCATCTTCATTCATGTCACATCCATAGCTGAAGGGAGAGGTATTCTGATGGAGGAGGGAGAAAGGAGGTCGCCGGAGCTGGCGGAGGAGGTGGGGATGGTGAGGAGTCAAATAGGGTCACGGCCGCCGAGCTGCCGGAGAAGGTGCAGGGAATGTGGAGGGCGTTGTGAGGCAGTTCAAGTACCAGTGGCGCTGCATGATTCATCACATCAGAATCAAAGGAAAAGAAGAAGAAGCAGCCATTTCTCTGCTGCTGTGGCTCTGTCTAGTGAAGATGAGACCTCAAATTACAAGCCAATAAGCTGGAAATGTAAATGTGGGAACTTTATCTTCAACCCATGA

Coding sequence (CDS)

ATGGGCAGCCTTCAAATTTGGCACAGAAACAAACACCTTTCAATTTCCTTGCTGTTCTTCTTCCTCCTCTCTGTTTCCATCTTCATTCATGTCACATCCATAGCTGAAGGGAGAGGTATTCTGATGGAGGAGGGAGAAAGGAGGTCGCCGGAGCTGGCGGAGGAGGTGGGGATGGTGAGGAGTCAAATAGGGTCACGGCCGCCGAGCTGCCGGAGAAGGTGCAGGGAATGTGGAGGGCGTTGTGAGGCAGTTCAAGTACCAGTGGCGCTGCATGATTCATCACATCAGAATCAAAGGAAAAGAAGAAGAAGCAGCCATTTCTCTGCTGCTGTGGCTCTGTCTAGTGAAGATGAGACCTCAAATTACAAGCCAATAAGCTGGAAATGTAAATGTGGGAACTTTATCTTCAACCCATGA

Protein sequence

MGSLQIWHRNKHLSISLLFFFLLSVSIFIHVTSIAEGRGILMEEGERRSPELAEEVGMVRSQIGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQRKRRRSSHFSAAVALSSEDETSNYKPISWKCKCGNFIFNP
Homology
[Close]
BLAST of Lag0005025 vs. NCBI nr
Match: XP_038886514.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Benincasa hispida])

HSP 1 Score: 201.1 bits (510), Expect = 6.4e-48
Identity = 112/150 (74.67%), Postives = 118/150 (78.67%), Query Frame = 0 

Query: 1   MGSLQIWHRNKHLSISLLFFFLLSVSIFIHVTSIAEGRGI--LMEEGERRSPELA---EE 60
           MGS Q WHR KH+SISLLF   LSVSI IHVTSI EGRGI   +  G   SPE A   E+
Sbjct: 1   MGSFQNWHRIKHVSISLLF---LSVSILIHVTSIVEGRGIQGSLTTGRSESPETAAAEEK 60

Query: 61  VG-MVRSQIGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQRKRR--RSSHFSA--- 120
            G M+R+QIGSRPPSCRRRCRECGG CEAVQVPVALHD SHQNQRK+R  RSSHFS    
Sbjct: 61  AGMMMRNQIGSRPPSCRRRCRECGGHCEAVQVPVALHDLSHQNQRKKRTSRSSHFSVNSK 120

Query: 121 -AVALSSEDETSNYKPISWKCKCGNFIFNP 139
             VALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 HDVALSSEDETSNYKPISWKCKCGNFIFNP 147

[Close]
BLAST of Lag0005025 vs. NCBI nr
Match: XP_023002540.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita maxima])

HSP 1 Score: 199.1 bits (505), Expect = 2.4e-47
Identity = 109/154 (70.78%), Postives = 118/154 (76.62%), Query Frame = 0 

Query: 1   MGSLQIWHRNKHLSISLLFFFLLSVSIFIHVTSIAEGRGI---LMEEGE-RRSPELAEEV 60
           MGSLQIWHRNKHLSI  LFF  LSV +FIH+TSIAEGRG    LME+ +    P  AE V
Sbjct: 1   MGSLQIWHRNKHLSIPFLFF--LSVFLFIHLTSIAEGRGFQTPLMEDRKVEEQPSTAELV 60

Query: 61  GMVRSQIGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQRKRRR---SSHFSA---- 120
            M RSQIGS+PPSCRRRCRECGG CEAVQVPVA+HDSSH+ QR+R R    SHFS+    
Sbjct: 61  RMRRSQIGSQPPSCRRRCRECGGPCEAVQVPVAVHDSSHEKQRRRTRRRIRSHFSSEASS 120

Query: 121 -----AVALSSEDETSNYKPISWKCKCGNFIFNP 139
                 VALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 SSKHNKVALSSEDETSNYKPISWKCKCGNFIFNP 152

[Close]
BLAST of Lag0005025 vs. NCBI nr
Match: XP_022131875.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Momordica charantia] >XP_022131876.1 EPIDERMAL PATTERNING FACTOR-like protein 2 [Momordica charantia])

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-46
Identity = 113/157 (71.97%), Postives = 121/157 (77.07%), Query Frame = 0 

Query: 1   MGSLQIWHRNK-HLSISLLFFFLLSVSIFIHVTSIAEGRGI---LME----EGERRSPEL 60
           MGSLQ WHRNK H+SISLL   LLSVSIF+ V S+AEGRGI   LME    E     PEL
Sbjct: 1   MGSLQNWHRNKQHISISLL---LLSVSIFVDVISMAEGRGIPTPLMEGRKVEAAGSWPEL 60

Query: 61  AEEVGMVRSQIGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQRKRRRSSHFSAA-- 120
            E+VGM+RSQIGSRPPSCRRRCRECGG CEA+QVPVALHD S QNQRK +RSSHF AA  
Sbjct: 61  PEKVGMIRSQIGSRPPSCRRRCRECGGHCEAIQVPVALHD-SQQNQRK-KRSSHFPAAAA 120

Query: 121 ---------VALSSEDETSNYKPISWKCKCGNFIFNP 139
                    +ALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 TSAGASNKDMALSSEDETSNYKPISWKCKCGNFIFNP 152

[Close]
BLAST of Lag0005025 vs. NCBI nr
Match: XP_023538508.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.7 bits (496), Expect = 2.7e-46
Identity = 108/160 (67.50%), Postives = 118/160 (73.75%), Query Frame = 0 

Query: 1   MGSLQIWHRNKHLSISLLFFFLLSVSIFIHVTSIAEGRGI---LMEEGE-RRSPELAEEV 60
           MGSLQIWHRNKHLSI  LFF  LSV +FIH+TS+AEGRG    LME+ +    P  AE V
Sbjct: 1   MGSLQIWHRNKHLSIPFLFF--LSVFLFIHLTSMAEGRGFQTPLMEDRKVEEQPSTAELV 60

Query: 61  GMVRSQIGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQRKRRR----SSHFSA--- 120
            M RSQIGS+PPSCRRRCRECGG CEAVQVPVA+HDS+HQ QR+R R     SHFS+   
Sbjct: 61  RMRRSQIGSQPPSCRRRCRECGGPCEAVQVPVAVHDSTHQKQRRRTRRRRIRSHFSSEAS 120

Query: 121 -----------AVALSSEDETSNYKPISWKCKCGNFIFNP 139
                       VALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 SSSSSSSSKHNKVALSSEDETSNYKPISWKCKCGNFIFNP 158

[Close]
BLAST of Lag0005025 vs. NCBI nr
Match: XP_022951797.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita moschata])

HSP 1 Score: 193.0 bits (489), Expect = 1.7e-45
Identity = 108/158 (68.35%), Postives = 118/158 (74.68%), Query Frame = 0 

Query: 1   MGSLQIWHRNKHLSISLLFFFLLSVSIFIHVTSIAEGRGI---LMEEGE-RRSPELAEEV 60
           MGSLQIWHRNKHLSI  LFF  LSV +FIH+TSIAEGRG    LME+ +    P  AE V
Sbjct: 1   MGSLQIWHRNKHLSIPFLFF--LSVFLFIHLTSIAEGRGFQTPLMEDRKVEEQPSTAELV 60

Query: 61  GM-VRSQIGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQRKRRR---SSHFSA--- 120
            M  RSQIGS+PPSCRRRCRECGG CEA+QVPVA+HDS+HQ QR+R R    SHFS+   
Sbjct: 61  RMRRRSQIGSQPPSCRRRCRECGGPCEAIQVPVAVHDSTHQKQRRRTRRRIRSHFSSEAS 120

Query: 121 ---------AVALSSEDETSNYKPISWKCKCGNFIFNP 139
                     VALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 SSSSSSKHNKVALSSEDETSNYKPISWKCKCGNFIFNP 156

[Close]
BLAST of Lag0005025 vs. ExPASy Swiss-Prot
Match: Q9T068 (EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EPFL2 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-14
Identity = 40/82 (48.78%), Postives = 50/82 (60.98%), Query Frame = 0 

Query: 58  MVRSQIGSRPPSCRR-RCRECGGRCEAVQVPVALHDSSHQNQRKRRRSSHFSAAVALSSE 117
           M+R  IGSRPP C R RCR C G CEA+QVP       H        SS  +  +  +  
Sbjct: 48  MMRGLIGSRPPRCERVRCRSC-GHCEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRG 107

Query: 118 DETSNYKPISWKCKCGNFIFNP 139
           D+++NYKP+SWKCKCGN I+NP
Sbjct: 108 DDSTNYKPMSWKCKCGNSIYNP 128

[Close]
BLAST of Lag0005025 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-07
Identity = 31/97 (31.96%), Postives = 47/97 (48.45%), Query Frame = 0 

Query: 50  PELAEEVGMV--RSQIGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQRKRRRSSHF 109
           P ++ +V ++  ++++GS PPSC  RC  C   C A+QVP          + +  R + F
Sbjct: 33  PPISPQVALIEDKARLGSTPPSCHNRCNNC-HPCMAIQVPTL------PTRSRFTRVNPF 92

Query: 110 SAAVALSSE------DETSNYKPISWKCKCGNFIFNP 139
           S              D+ SNYKP+ WKC C    +NP
Sbjct: 93  SGGFVRPPSSLTTVLDQYSNYKPMGWKCHCNGHFYNP 122

[Close]
BLAST of Lag0005025 vs. ExPASy Swiss-Prot
Match: C4B8C4 (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EPFL3 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.6e-04
Identity = 37/117 (31.62%), Postives = 53/117 (45.30%), Query Frame = 0 

Query: 19  FFFLLSVSIFIHVTSIAEGRGILMEEGERR----SPELAEEVGMVRSQIGSRPPSCRRRC 78
           FFF+  + I+I    I + +    EE  RR      E  EE+   R +IGS+PPSC ++C
Sbjct: 11  FFFVFPIIIYIGPAEIIKPQA--AEENSRRRILNPNENKEEIVKRRRRIGSKPPSCEKKC 70

Query: 79  RECGGRCEAVQVPVALHDSSHQNQRKRRRSSHFSAAVALSSEDETSNYKPISWKCKC 132
             C   CEA+Q P  +    H        S H+            +NY+P  W+C C
Sbjct: 71  YGC-EPCEAIQFP-TISSIPH-------LSPHY------------ANYQPEGWRCHC 104

The following BLAST results are available for this feature:
BLAST of Lag0005025 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038886514.16.4e-4874.67EPIDERMAL PATTERNING FACTOR-like protein 2 [Benincasa hispida][more]
XP_023002540.12.4e-4770.78EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita maxima][more]
XP_022131875.11.6e-4671.97EPIDERMAL PATTERNING FACTOR-like protein 2 [Momordica charantia] >XP_022131876.1... [more]
XP_023538508.12.7e-4667.50EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita pepo subsp. pepo][more]
XP_022951797.11.7e-4568.35EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita moschata][more]
BLAST of Lag0005025 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9T0682.2e-1448.78EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q9LFT53.3e-0731.96EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
C4B8C41.6e-0431.62EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF17181EPFcoord: 62..138
e-value: 2.5E-17
score: 62.6
NoneNo IPR availablePANTHERPTHR33109:SF54EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 2coord: 6..138
IPR039455EPIDERMAL PATTERNING FACTOR-like proteinPANTHERPTHR33109EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4coord: 6..138

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005025.1Lag0005025.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010052 guard cell differentiation
biological_process GO:0010374 stomatal complex development
cellular_component GO:0110165 cellular anatomical entity