Lag0005012 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005012
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionOrf109b
Locationchr6: 9549635 .. 9550909 (+)
RNA-Seq ExpressionLag0005012
SyntenyLag0005012
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGACTTGGGTATGTATACTTTTGATTCTCTCTGGAGACATGGCTATCGTATGTCCCCAGCGTTACAACTCGAGTTTTGCTTCGCATCAAACAACTGGTATTATGCATTCATCTTCCAAGCGTCATTCTCAATGGTTTTTTACATTTACACTGGGGCTACCCATCATATGGCGAGCAATCCGGCAGCATTTGTCTCATCCTCGCAGTACCAAGGCAAAAGTGTCGTCTTCACTGGTGACCACACCCCACTCTCTATTTCAAACATTGGTACGGAGATATTAGAATCTAACCACTTGAACTATAACAGACCTTTTGGTAATGGTCGTTAGTACGGTTGAACTATACTCATGTTGGACAGTAAAATTGGCGTATAGAAATATAGTTGAAAAAAGAGTAATGGTAAAATGAGAGAAGTTTTTGATAAAGAAATCTTCACATGAGAATTGAAACTTAAGAAACTCTTTTAAATTTACTAAACTTCTACTCTTCTGGATCTGTCCATGTGATTCTTTTTCTTTTTTTTTTCAACAGAAAAAAAAAATAATAAGAAAAGGCATATGCTGACACTGAAACTATTACAATCCCAAGACCATAGCCAGTTTTATTTCAGAATTGGAAAGGTTCATATTCATTCACTTCTACAAAAATCCTTTAGATTCTGTACACCAATTAATCTAACTGTTCTGTCAGAATATATATATTTTTTAACAAAACTAGTTCTCAATTCTCATTAATTTAATTCATACAGACTATCCCTTATTAAACATTATAAAACAATTGTACATATGCTATATATTTTGATTCAATTTCATTTATCGTTACTTTAAATATAAATCGATCAGTTCGATTTCGTTTCAGATTCTAAAACTTGATTTGATCATAAATATAAACAAAAAAACTAAGTGCAACATCACAAGTTCGCCTAATTAAGCAAAGAAGCAGCAAAAGATTTCACAGAAGAATCAAGGATTAACTCTATATATTGAAAATCAGTATCTTAATTACAAAAATTAACCACATTTCAGATACAGATTACAAACTCGGTTACAGGATTACCTCAAATGTATATGTATTCTGCTACAACAGTTGAATGCACAAGGAACAAGCCAACACAGAGGTATGAGAGACCAGGTTTCACCAGTGTCAATACACAAATCATCAAAAGAAAAGTTCCCATAGAGGGATTAATGATGTTTACCTACGGATTCGGGATTGCGATGCGACGGGACCGAGGTGAGGAGTTTTCCCCTTATTTTGAACTGTGGAAGTAA

mRNA sequence

ATGATTGACTTGGGTATGTATACTTTTGATTCTCTCTGGAGACATGGCTATCGTATGTCCCCAGCGTTACAACTCGAGTTTTGCTTCGCATCAAACAACTGGTATTATGCATTCATCTTCCAAGCGTCATTCTCAATGGTTTTTTACATTTACACTGGGGCTACCCATCATATGGCGAGCAATCCGGCAGCATTTGTCTCATCCTCGCAGTACCAAGGCAAAAGTGTCGTCTTCACTGGTGACCACACCCCACTCTCTATTTCAAACATTGGTACGGAGATATTAGAATCTAACCACTTGAACTATAACAGACCTTTTGGATTACCTCAAATGTATATGTATTCTGCTACAACAGTTGAATGCACAAGGAACAAGCCAACACAGAGGTATGAGAGACCAGGTTTCACCAGTGTCAATACACAAATCATCAAAAGAAAAGTTCCCATAGAGGGATTAATGATGTTTACCTACGGATTCGGGATTGCGATGCGACGGGACCGAGGTGAGGAGTTTTCCCCTTATTTTGAACTGTGGAAGTAA

Coding sequence (CDS)

ATGATTGACTTGGGTATGTATACTTTTGATTCTCTCTGGAGACATGGCTATCGTATGTCCCCAGCGTTACAACTCGAGTTTTGCTTCGCATCAAACAACTGGTATTATGCATTCATCTTCCAAGCGTCATTCTCAATGGTTTTTTACATTTACACTGGGGCTACCCATCATATGGCGAGCAATCCGGCAGCATTTGTCTCATCCTCGCAGTACCAAGGCAAAAGTGTCGTCTTCACTGGTGACCACACCCCACTCTCTATTTCAAACATTGGTACGGAGATATTAGAATCTAACCACTTGAACTATAACAGACCTTTTGGATTACCTCAAATGTATATGTATTCTGCTACAACAGTTGAATGCACAAGGAACAAGCCAACACAGAGGTATGAGAGACCAGGTTTCACCAGTGTCAATACACAAATCATCAAAAGAAAAGTTCCCATAGAGGGATTAATGATGTTTACCTACGGATTCGGGATTGCGATGCGACGGGACCGAGGTGAGGAGTTTTCCCCTTATTTTGAACTGTGGAAGTAA

Protein sequence

MIDLGMYTFDSLWRHGYRMSPALQLEFCFASNNWYYAFIFQASFSMVFYIYTGATHHMASNPAAFVSSSQYQGKSVVFTGDHTPLSISNIGTEILESNHLNYNRPFGLPQMYMYSATTVECTRNKPTQRYERPGFTSVNTQIIKRKVPIEGLMMFTYGFGIAMRRDRGEEFSPYFELWK
Homology
[Close]
BLAST of Lag0005012 vs. NCBI nr
Match: YP_009045803.1 (orf125 [Batis maritima] >AIC83406.1 orf125 [Batis maritima])

HSP 1 Score: 98.6 bits (244), Expect = 5.8e-17
Identity = 61/93 (65.59%), Postives = 67/93 (72.04%), Query Frame = 0 

Query: 19  MSPALQLEFCFASNN---WYYAFIFQASFSMVF-YIYTG-ATHHMASNPAAFVSSSQYQG 78
           MS  LQLEFC ASNN    YYAFIFQASFSM F +++ G   ++M  NPAAFVSSS YQ 
Sbjct: 1   MSTELQLEFCSASNNSSRGYYAFIFQASFSMAFLHLHWGYPNYYMTRNPAAFVSSSPYQD 60

Query: 79  KSVVFTGDHTPLSISNIGTEILESN-----HLN 102
           KSVVFTGDHTPLSIS+IGT  L S      HLN
Sbjct: 61  KSVVFTGDHTPLSISDIGTISLSSRSGNVLHLN 93

[Close]
BLAST of Lag0005012 vs. NCBI nr
Match: YP_009320212.1 (orf109b [Sinapis arvensis] >AJR33091.1 orf109b [Sinapis arvensis])

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-07
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 0 

Query: 1  MIDLGMYTFDSLWRHGYRMSPALQLEFCFASNNWYYAFIFQASFSMV---FYIYTGATHH 59
          MIDLGMYTFDSLWR+G RMS AL+LEFC AS   ++  I     S++   FYIY GAT H
Sbjct: 1  MIDLGMYTFDSLWRYGSRMSTALELEFCSASQTTHHVGIIVHLPSVILNFFYIYMGATPH 60

[Close]
BLAST of Lag0005012 vs. NCBI nr
Match: AGY62789.1 (orf109 [Eruca vesicaria subsp. sativa])

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-07
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 0 

Query: 1  MIDLGMYTFDSLWRHGYRMSPALQLEFCFASNNWYYAFIFQASFSMV---FYIYTGATHH 59
          MIDLGMYTFDSLWR+G RMS AL+LEFC AS   ++  I     S++   FYIY GAT H
Sbjct: 1  MIDLGMYTFDSLWRYGSRMSTALELEFCSASQTTHHVGIIVHLPSVILNFFYIYMGATPH 60

[Close]
BLAST of Lag0005012 vs. NCBI nr
Match: XP_030925283.1 (uncharacterized protein LOC115952312 [Quercus lobata])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-06
Identity = 36/49 (73.47%), Postives = 37/49 (75.51%), Query Frame = 0 

Query: 58  MASNPAAFVSSSQYQGKSVVFTGDHTPLSISNIGTEILESN-----HLN 102
           M SN AAFVSSS YQGKSVVFTGDHTPLSIS+IGT  L S      HLN
Sbjct: 1   MTSNLAAFVSSSPYQGKSVVFTGDHTPLSISDIGTISLSSRSGNVPHLN 49

[Close]
BLAST of Lag0005012 vs. NCBI nr
Match: KAG2269805.1 (hypothetical protein Bca52824_064360 [Brassica carinata])

HSP 1 Score: 58.2 bits (139), Expect = 8.7e-05
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 1  MIDLGMYTFDSLWRHGYRMSPALQLEFCFASNNWYY 37
          MIDLGMYTFDSLWR+G RMS AL+LEFC AS   ++
Sbjct: 58 MIDLGMYTFDSLWRYGSRMSTALELEFCSASQTTHH 93

The following BLAST results are available for this feature:
BLAST of Lag0005012 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009045803.15.8e-1765.59orf125 [Batis maritima] >AIC83406.1 orf125 [Batis maritima][more]
YP_009320212.11.9e-0759.02orf109b [Sinapis arvensis] >AJR33091.1 orf109b [Sinapis arvensis][more]
AGY62789.11.9e-0759.02orf109 [Eruca vesicaria subsp. sativa][more]
XP_030925283.11.2e-0673.47uncharacterized protein LOC115952312 [Quercus lobata][more]
KAG2269805.18.7e-0572.22hypothetical protein Bca52824_064360 [Brassica carinata][more]
BLAST of Lag0005012 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005012.1Lag0005012.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane